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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PLEKHA6 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
60.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
52.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
49.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
49.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
48.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
47.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
46.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
45.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
43.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
41.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
40.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
39.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
38.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
38.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
37.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
34.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
34.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
33.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
33.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
33.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
33.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
33.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
31.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
31.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
29.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
28.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
28.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
27.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
27.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
26.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
26.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
26.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
26.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
26.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
25.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
25.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
25.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
25.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
24.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
23.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
23.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
23.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
23.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
23.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
22.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
22.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
22.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
22.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
21.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
21.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
21.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
20.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
20.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
20.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
20.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
20.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
20.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
20.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
19.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
19.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
19.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
19.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
19.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
19.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
19.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
18.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
18.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
18.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
18.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
17.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
17.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
17.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
17.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
17.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
17.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
17.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
16.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
16.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
16.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
15.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
15.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
15.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
15.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
15.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
15.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
15.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
15.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
15.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
15.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
15.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
15.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
14.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
14.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
14.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
14.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
14.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
14.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
14.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
14.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
14.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
14.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
14.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
14.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
13.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
13.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
13.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
13.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
13.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
13.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
13.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
13.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
12.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
12.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
12.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
12.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
12.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
12.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
12.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
12.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
12.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
12.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
11.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
11.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
11.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
11.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
11.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
11.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
11.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
11.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
10.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
10.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
9.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
9.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
7.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
7.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
6.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
6.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
5.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
5.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
5.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
5.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
4.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
3.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PLEKHA6 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.5
Number of samples
231
Samples
Sample
Description
TPM
DO50844
0 years, male, NA, stage:4, alive, 300 days
56.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
55.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
55.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
37.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
32.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
30.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
28.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
27.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
27.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
26.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
25.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
25.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
24.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
24.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
23.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
21.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
21.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
20.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
20.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
20.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
19.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
18.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
18.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
18.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
18.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
17.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
17.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
16.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
16.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
16.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
16.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
15.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
15.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
15.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
15.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
15.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
15.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
15.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
14.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
14.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
14.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
14.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
13.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
13.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
13.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
13.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
13.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
13.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
12.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
12.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
12.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
12.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
12.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
11.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
11.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
11.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
11.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
11.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
11.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
10.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
10.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
10.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
10.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
9.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
8.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
8.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
8.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
8.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
8.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
8.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
7.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
7.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
7.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
7.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
7.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
7.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
7.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
6.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
6.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
6.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
5.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
5.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
5.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
5.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
5.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
5.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
5.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
4.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
4.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
4.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
4.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
4.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
3.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
3.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
3.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
3.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
3.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
3.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
3.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
3.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
2.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
2.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
2.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
2.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
2.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
2.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
2.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
2.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
1.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
1.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
1.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
1.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
737
Tumor
1.4
863
Tumor
1.4
523
Tumor
1.3
957
Tumor
1.3
445
Tumor
1.2
515
Tumor
1.2
357
Tumor
0.9
921
Tumor
0.9
513
Tumor
0.9
777
Tumor
0.8
393
Tumor
0.8
487
Tumor
0.8
313
Tumor
0.8
527
Tumor
0.7
481
Tumor
0.7
147
Tumor
0.7
955
Tumor
0.6
1027
Tumor
0.6
743
Tumor
0.6
477
Tumor
0.6
953
Tumor
0.6
533
Tumor
0.6
298
Normal
0.6
785
Tumor
0.5
635
Tumor
0.5
131
Tumor
0.5
912
Normal
0.5
695
Tumor
0.5
744
Normal
0.5
813
Tumor
0.5
647
Tumor
0.4
1014
Normal
0.4
1043
Tumor
0.4
483
Tumor
0.4
878
Normal
0.4
723
Tumor
0.4
271
Tumor
0.4
882
Normal
0.4
497
Tumor
0.4
443
Tumor
0.4
746
Normal
0.4
964
Normal
0.4
534
Normal
0.4
954
Normal
0.4
924
Normal
0.4
1041
Tumor
0.4
977
Tumor
0.3
484
Normal
0.3
554
Normal
0.3
938
Normal
0.3
1013
Tumor
0.3
482
Normal
0.3
1022
Normal
0.3
161
Tumor
0.3
423
Tumor
0.3
342
Normal
0.3
461
Tumor
0.3
873
Tumor
0.3
984
Normal
0.3
257
Tumor
0.3
392
Normal
0.3
488
Normal
0.3
818
Normal
0.3
222
Normal
0.3
455
Tumor
0.3
714
Normal
0.3
431
Tumor
0.3
361
Tumor
0.3
664
Normal
0.3
526
Normal
0.3
376
Normal
0.3
627
Tumor
0.3
518
Normal
0.3
698
Normal
0.3
745
Tumor
0.3
648
Normal
0.3
472
Normal
0.3
1026
Normal
0.3
858
Normal
0.3
162
Normal
0.3
465
Tumor
0.3
778
Normal
0.3
862
Normal
0.3
456
Normal
0.3
756
Normal
0.3
824
Normal
0.2
686
Normal
0.2
742
Normal
0.2
218
Normal
0.2
462
Normal
0.2
365
Tumor
0.2
663
Tumor
0.2
922
Normal
0.2
696
Normal
0.2
666
Normal
0.2
426
Normal
0.2
297
Tumor
0.2
464
Normal
0.2
738
Normal
0.2
196
Normal
0.2
1045
Tumor
0.2
572
Normal
0.2
952
Normal
0.2
528
Normal
0.2
728
Normal
0.2
1025
Tumor
0.2
616
Normal
0.2
125
Tumor
0.2
546
Normal
0.2
414
Normal
0.2
436
Normal
0.2
341
Tumor
0.2
314
Normal
0.2
926
Normal
0.2
191
Tumor
0.2
327
Tumor
0.2
148
Normal
0.2
412
Normal
0.2
568
Normal
0.2
944
Normal
0.2
1046
Normal
0.2
636
Normal
0.2
958
Normal
0.2
186
Normal
0.2
943
Tumor
0.2
128
Normal
0.2
968
Normal
0.2
132
Normal
0.2
1032
Normal
0.2
332
Normal
0.2
866
Normal
0.2
982
Normal
0.2
721
Tumor
0.2
286
Normal
0.2
716
Normal
0.2
514
Normal
0.2
615
Tumor
0.2
232
Normal
0.2
352
Normal
0.1
915
Tumor
0.1
142
Normal
0.1
141
Tumor
0.1
358
Normal
0.1
137
Tumor
0.1
618
Normal
0.1
786
Normal
0.1
516
Normal
0.1
884
Normal
0.1
1028
Normal
0.1
448
Normal
0.1
642
Normal
0.1
917
Tumor
0.1
452
Normal
0.1
354
Normal
0.1
538
Normal
0.1
672
Normal
0.1
344
Normal
0.1
553
Tumor
0.1
478
Normal
0.1
258
Normal
0.1
213
Tumor
0.1
396
Normal
0.1
195
Tumor
0.1
466
Normal
0.1
662
Normal
0.1
918
Normal
0.1
574
Normal
0.1
814
Normal
0.1
425
Tumor
0.1
864
Normal
0.1
564
Normal
0.1
364
Normal
0.1
277
Tumor
0.1
463
Tumor
0.1
394
Normal
0.1
471
Tumor
0.1
1016
Normal
0.1
558
Normal
0.1
114
Normal
0.1
563
Tumor
0.1
172
Normal
0.1
278
Normal
0.0
494
Normal
0.0
524
Normal
0.0
416
Normal
0.0
187
Tumor
0.0
517
Tumor
0.0
422
Normal
0.0
368
Normal
0.0
446
Normal
0.0
424
Normal
0.0
415
Tumor
0.0
865
Tumor
0.0
816
Normal
0.0
1044
Normal
0.0
966
Normal
0.0
474
Normal
0.0
428
Normal
0.0
111
Normal
0.0
384
Normal
0.0
925
Tumor
0.0
956
Normal
0.0
1031
Tumor
0.0
874
Normal
0.0
284
Normal
0.0
432
Normal
0.0
628
Normal
0.0
557
Tumor
0.0
228
Normal
0.0
124
Normal
0.0
473
Tumor
0.0
911
Tumor
0.0
185
Tumor
0.0
386
Normal
0.0
356
Normal
0.0
914
Normal
0.0
136
Normal
0.0
722
Normal
0.0
413
Tumor
0.0
868
Normal
0.0
883
Tumor
0.0
937
Tumor
0.0
1042
Normal
0.0
468
Normal
0.0
214
Normal
0.0
388
Normal
-0.1
537
Tumor
-0.1
498
Normal
-0.1
138
Normal
-0.1
421
Tumor
-0.1
328
Normal
-0.1
146
Normal
-0.1
963
Tumor
-0.1
375
Tumor
-0.1
268
Normal
-0.1
127
Tumor
-0.1
567
Tumor
-0.1
525
Tumor
-0.1
343
Tumor
-0.1
881
Tumor
-0.1
267
Tumor
-0.1
433
Tumor
-0.1
272
Normal
-0.1
916
Normal
-0.1
617
Tumor
-0.1
312
Normal
-0.1
192
Normal
-0.1
536
Normal
-0.1
411
Tumor
-0.1
727
Tumor
-0.1
366
Normal
-0.1
978
Normal
-0.2
444
Normal
-0.2
857
Tumor
-0.2
224
Normal
-0.2
981
Tumor
-0.2
545
Tumor
-0.2
145
Tumor
-0.2
867
Tumor
-0.2
951
Tumor
-0.2
311
Tumor
-0.2
262
Normal
-0.2
112
Tumor
-0.2
976
Normal
-0.2
231
Tumor
-0.2
135
Tumor
-0.2
126
Normal
-0.2
331
Tumor
-0.2
493
Tumor
-0.2
641
Tumor
-0.2
852
Normal
-0.2
212
Normal
-0.3
755
Tumor
-0.3
913
Tumor
-0.3
355
Tumor
-0.3
434
Normal
-0.3
188
Normal
-0.3
491
Tumor
-0.3
492
Normal
-0.3
217
Tumor
-0.3
983
Tumor
-0.3
353
Tumor
-0.3
362
Normal
-0.3
227
Tumor
-0.3
923
Tumor
-0.4
447
Tumor
-0.4
363
Tumor
-0.4
113
Tumor
-0.4
223
Tumor
-0.4
715
Tumor
-0.4
261
Tumor
-0.5
171
Tumor
-0.5
741
Tumor
-0.5
685
Tumor
-0.5
221
Tumor
-0.5
573
Tumor
-0.5
427
Tumor
-0.5
451
Tumor
-0.5
385
Tumor
-0.5
391
Tumor
-0.5
387
Tumor
-0.5
975
Tumor
-0.6
1021
Tumor
-0.6
467
Tumor
-0.6
697
Tumor
-0.6
665
Tumor
-0.6
285
Tumor
-0.6
823
Tumor
-0.6
1015
Tumor
-0.6
395
Tumor
-0.6
211
Tumor
-0.7
283
Tumor
-0.7
815
Tumor
-0.7
571
Tumor
-0.7
851
Tumor
-0.7
965
Tumor
-0.7
817
Tumor
-0.8
713
Tumor
-0.8
435
Tumor
-0.8
861
Tumor
-0.8
877
Tumor
-0.8
123
Tumor
-0.8
671
Tumor
-0.9
351
Tumor
-0.9
383
Tumor
-0.9
967
Tumor
-0.9
535
Tumor
-0.9
724
Normal
-1.0
367
Tumor
-1.1
661
Tumor
-1.2
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
