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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GUK1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
233.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
819.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
736.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
585.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
578.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
533.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
513.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
503.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
496.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
454.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
453.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
439.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
436.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
432.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
430.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
428.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
427.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
423.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
422.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
419.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
417.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
412.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
402.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
401.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
390.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
385.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
377.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
376.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
369.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
365.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
365.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
364.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
363.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
361.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
357.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
356.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
353.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
353.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
352.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
350.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
349.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
349.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
348.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
348.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
335.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
334.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
333.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
332.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
332.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
331.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
329.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
328.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
328.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
328.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
327.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
327.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
326.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
326.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
326.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
325.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
323.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
322.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
322.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
321.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
321.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
320.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
319.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
318.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
317.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
314.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
313.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
313.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
313.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
312.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
312.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
311.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
310.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
309.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
309.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
308.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
306.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
306.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
303.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
302.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
301.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
298.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
297.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
297.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
296.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
296.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
295.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
295.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
293.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
292.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
291.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
290.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
289.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
289.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
289.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
287.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
287.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
286.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
286.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
285.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
284.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
282.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
281.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
281.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
281.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
280.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
277.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
276.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
275.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
274.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
274.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
273.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
272.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
271.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
269.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
269.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
269.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
267.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
267.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
266.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
264.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
264.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
263.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
261.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
260.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
260.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
256.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
253.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
250.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
250.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
249.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
248.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
247.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
246.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
245.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
245.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
244.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
243.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
242.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
241.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
241.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
240.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
240.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
239.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
239.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
239.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
237.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
235.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
234.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
234.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
234.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
233.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
233.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
232.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
231.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
231.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
230.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
229.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
228.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
227.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
226.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
226.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
225.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
225.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
224.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
224.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
224.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
223.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
222.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
222.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
222.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
221.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
221.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
220.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
219.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
218.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
218.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
218.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
217.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
217.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
217.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
216.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
215.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
214.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
211.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
210.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
209.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
209.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
209.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
208.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
208.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
208.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
207.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
207.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
207.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
206.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
206.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
206.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
204.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
203.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
203.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
202.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
201.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
201.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
201.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
201.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
199.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
198.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
196.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
194.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
194.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
190.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
190.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
189.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
189.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
189.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
188.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
187.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
187.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
187.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
187.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
186.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
186.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
185.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
185.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
183.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
183.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
183.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
182.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
181.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
181.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
181.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
181.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
180.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
179.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
179.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
178.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
177.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
177.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
177.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
177.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
175.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
174.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
174.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
174.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
174.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
174.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
172.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
172.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
172.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
171.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
169.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
169.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
168.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
168.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
167.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
167.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
167.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
167.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
166.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
166.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
165.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
165.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
164.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
164.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
162.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
161.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
160.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
158.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
158.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
158.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
157.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
156.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
156.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
156.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
155.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
155.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
154.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
153.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
152.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
151.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
150.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
150.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
150.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
150.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
150.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
149.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
149.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
149.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
149.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
147.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
146.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
146.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
146.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
145.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
144.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
143.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
143.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
143.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
141.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
140.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
139.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
139.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
139.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
139.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
137.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
136.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
136.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
135.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
135.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
133.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
133.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
130.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
129.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
128.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
128.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
127.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
125.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
125.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
124.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
121.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
121.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
121.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
121.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
120.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
119.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
117.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
117.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
117.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
115.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
115.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
112.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
110.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
107.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
107.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
105.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
104.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
103.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
99.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
99.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
96.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
95.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
95.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
93.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
85.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
84.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
81.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
79.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
79.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
79.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
77.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
73.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
71.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
68.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
65.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
63.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
62.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
41.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GUK1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
176.3
Number of samples
231
Samples
Sample
Description
TPM
DO48747
0 years, male, NA, stage:3, alive, 540 days
520.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
446.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
445.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
424.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
415.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
398.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
392.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
373.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
365.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
363.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
355.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
354.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
354.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
330.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
327.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
321.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
314.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
314.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
309.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
302.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
297.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
295.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
293.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
292.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
292.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
291.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
287.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
287.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
284.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
284.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
277.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
277.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
276.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
268.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
268.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
266.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
260.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
259.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
259.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
255.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
252.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
250.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
247.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
243.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
241.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
238.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
238.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
238.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
236.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
233.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
229.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
229.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
227.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
226.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
225.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
223.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
222.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
220.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
216.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
212.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
212.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
212.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
209.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
209.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
209.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
207.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
206.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
204.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
204.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
203.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
202.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
201.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
195.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
193.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
193.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
193.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
191.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
191.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
191.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
188.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
187.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
187.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
187.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
182.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
181.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
180.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
180.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
180.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
180.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
179.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
178.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
178.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
178.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
178.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
177.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
177.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
176.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
175.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
173.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
172.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
171.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
168.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
167.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
165.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
161.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
160.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
159.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
159.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
159.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
158.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
158.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
157.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
157.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
155.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
155.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
154.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
151.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
149.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
149.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
149.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
149.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
149.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
149.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
148.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
147.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
147.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
147.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
146.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
146.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
146.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
145.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
145.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
144.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
144.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
143.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
143.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
142.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
141.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
141.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
141.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
139.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
139.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
139.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
138.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
137.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
137.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
136.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
134.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
131.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
131.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
131.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
131.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
130.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
129.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
129.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
129.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
127.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
126.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
125.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
125.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
123.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
122.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
121.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
121.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
121.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
120.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
119.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
118.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
117.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
116.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
116.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
115.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
115.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
114.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
114.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
114.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
113.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
113.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
112.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
112.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
111.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
110.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
110.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
107.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
107.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
106.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
105.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
104.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
102.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
101.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
100.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
100.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
99.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
98.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
98.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
97.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
96.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
95.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
94.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
94.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
93.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
92.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
91.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
90.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
89.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
89.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
87.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
84.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
82.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
79.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
78.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
77.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
77.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
76.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
76.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
75.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
75.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
74.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
73.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
71.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
71.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
70.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
68.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
65.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
64.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
63.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
62.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
62.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
60.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
57.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
47.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
777
Tumor
1.2
557
Tumor
1.0
327
Tumor
1.0
923
Tumor
0.9
571
Tumor
0.8
513
Tumor
0.8
713
Tumor
0.8
863
Tumor
0.8
721
Tumor
0.8
525
Tumor
0.8
745
Tumor
0.7
724
Normal
0.7
627
Tumor
0.6
483
Tumor
0.6
951
Tumor
0.6
471
Tumor
0.6
527
Tumor
0.6
147
Tumor
0.6
925
Tumor
0.6
697
Tumor
0.6
112
Tumor
0.6
873
Tumor
0.5
963
Tumor
0.5
481
Tumor
0.5
411
Tumor
0.5
313
Tumor
0.5
823
Tumor
0.5
695
Tumor
0.5
741
Tumor
0.4
515
Tumor
0.4
357
Tumor
0.4
917
Tumor
0.4
355
Tumor
0.4
191
Tumor
0.4
361
Tumor
0.4
492
Normal
0.4
937
Tumor
0.4
1042
Normal
0.4
445
Tumor
0.4
865
Tumor
0.4
617
Tumor
0.4
415
Tumor
0.4
473
Tumor
0.3
1025
Tumor
0.3
514
Normal
0.3
714
Normal
0.3
135
Tumor
0.3
953
Tumor
0.3
553
Tumor
0.3
737
Tumor
0.3
852
Normal
0.3
1015
Tumor
0.3
722
Normal
0.3
497
Tumor
0.3
958
Normal
0.3
696
Normal
0.3
1013
Tumor
0.3
641
Tumor
0.3
356
Normal
0.3
755
Tumor
0.3
877
Tumor
0.3
1021
Tumor
0.3
491
Tumor
0.3
221
Tumor
0.3
861
Tumor
0.3
375
Tumor
0.3
785
Tumor
0.3
1031
Tumor
0.3
924
Normal
0.3
498
Normal
0.3
977
Tumor
0.3
558
Normal
0.3
488
Normal
0.3
494
Normal
0.2
1041
Tumor
0.2
978
Normal
0.2
433
Tumor
0.2
563
Tumor
0.2
465
Tumor
0.2
516
Normal
0.2
132
Normal
0.2
328
Normal
0.2
868
Normal
0.2
911
Tumor
0.2
916
Normal
0.2
493
Tumor
0.2
477
Tumor
0.2
195
Tumor
0.2
921
Tumor
0.2
227
Tumor
0.2
716
Normal
0.2
277
Tumor
0.2
574
Normal
0.2
686
Normal
0.2
517
Tumor
0.2
982
Normal
0.2
286
Normal
0.2
728
Normal
0.2
461
Tumor
0.2
533
Tumor
0.2
364
Normal
0.2
944
Normal
0.2
224
Normal
0.2
568
Normal
0.2
425
Tumor
0.2
956
Normal
0.2
756
Normal
0.2
743
Tumor
0.2
915
Tumor
0.2
952
Normal
0.2
573
Tumor
0.2
1014
Normal
0.2
918
Normal
0.2
912
Normal
0.2
145
Tumor
0.2
478
Normal
0.2
984
Normal
0.2
518
Normal
0.2
136
Normal
0.2
862
Normal
0.2
526
Normal
0.2
228
Normal
0.2
416
Normal
0.2
524
Normal
0.2
536
Normal
0.2
818
Normal
0.2
628
Normal
0.2
523
Tumor
0.2
267
Tumor
0.1
968
Normal
0.1
484
Normal
0.1
435
Tumor
0.1
723
Tumor
0.1
926
Normal
0.1
554
Normal
0.1
746
Normal
0.1
572
Normal
0.1
211
Tumor
0.1
138
Normal
0.1
421
Tumor
0.1
867
Tumor
0.1
395
Tumor
0.1
1046
Normal
0.1
443
Tumor
0.1
314
Normal
0.1
618
Normal
0.1
137
Tumor
0.1
864
Normal
0.1
231
Tumor
0.1
284
Normal
0.1
444
Normal
0.1
126
Normal
0.1
212
Normal
0.1
545
Tumor
0.1
943
Tumor
0.1
192
Normal
0.1
474
Normal
0.1
742
Normal
0.1
412
Normal
0.1
434
Normal
0.1
786
Normal
0.1
1016
Normal
0.1
387
Tumor
0.1
365
Tumor
0.1
874
Normal
0.1
698
Normal
0.1
1044
Normal
0.1
954
Normal
0.1
467
Tumor
0.1
824
Normal
0.1
851
Tumor
0.1
642
Normal
0.1
883
Tumor
0.1
976
Normal
0.1
283
Tumor
0.1
966
Normal
0.1
636
Normal
0.1
388
Normal
0.1
964
Normal
0.1
448
Normal
0.1
213
Tumor
0.1
922
Normal
0.1
866
Normal
0.1
975
Tumor
0.1
128
Normal
0.1
1045
Tumor
0.1
938
Normal
0.1
113
Tumor
0.1
778
Normal
0.1
141
Tumor
0.1
738
Normal
0.1
1043
Tumor
0.1
363
Tumor
0.0
538
Normal
0.0
884
Normal
0.0
214
Normal
0.0
278
Normal
0.0
1022
Normal
0.0
1028
Normal
0.0
463
Tumor
0.0
881
Tumor
0.0
564
Normal
0.0
528
Normal
0.0
396
Normal
0.0
663
Tumor
0.0
534
Normal
0.0
913
Tumor
0.0
957
Tumor
0.0
223
Tumor
0.0
257
Tumor
0.0
436
Normal
0.0
472
Normal
0.0
1032
Normal
0.0
1026
Normal
0.0
546
Normal
0.0
981
Tumor
0.0
312
Normal
0.0
125
Tumor
0.0
664
Normal
0.0
431
Tumor
0.0
376
Normal
0.0
111
Normal
0.0
162
Normal
0.0
482
Normal
0.0
462
Normal
0.0
384
Normal
0.0
878
Normal
0.0
114
Normal
0.0
332
Normal
0.0
468
Normal
0.0
685
Tumor
0.0
218
Normal
0.0
394
Normal
0.0
647
Tumor
0.0
882
Normal
0.0
414
Normal
0.0
146
Normal
0.0
455
Tumor
0.0
423
Tumor
0.0
914
Normal
0.0
424
Normal
0.0
456
Normal
0.0
131
Tumor
0.0
368
Normal
0.0
148
Normal
0.0
142
Normal
0.0
648
Normal
0.0
672
Normal
0.0
955
Tumor
0.0
537
Tumor
0.0
297
Tumor
-0.1
185
Tumor
-0.1
466
Normal
-0.1
261
Tumor
-0.1
428
Normal
-0.1
1027
Tumor
-0.1
422
Normal
-0.1
271
Tumor
-0.1
447
Tumor
-0.1
451
Tumor
-0.1
662
Normal
-0.1
196
Normal
-0.1
616
Normal
-0.1
426
Normal
-0.1
172
Normal
-0.1
383
Tumor
-0.1
298
Normal
-0.1
393
Tumor
-0.1
386
Normal
-0.1
311
Tumor
-0.1
354
Normal
-0.1
446
Normal
-0.1
432
Normal
-0.1
817
Tumor
-0.1
366
Normal
-0.1
452
Normal
-0.1
615
Tumor
-0.1
127
Tumor
-0.1
666
Normal
-0.1
464
Normal
-0.1
385
Tumor
-0.1
217
Tumor
-0.1
222
Normal
-0.1
635
Tumor
-0.1
744
Normal
-0.1
661
Tumor
-0.1
352
Normal
-0.2
392
Normal
-0.2
814
Normal
-0.2
188
Normal
-0.2
186
Normal
-0.2
671
Tumor
-0.2
427
Tumor
-0.2
344
Normal
-0.2
727
Tumor
-0.2
262
Normal
-0.2
353
Tumor
-0.2
124
Normal
-0.2
268
Normal
-0.2
358
Normal
-0.2
362
Normal
-0.2
715
Tumor
-0.2
123
Tumor
-0.2
343
Tumor
-0.2
567
Tumor
-0.2
171
Tumor
-0.2
258
Normal
-0.3
813
Tumor
-0.3
413
Tumor
-0.3
967
Tumor
-0.3
983
Tumor
-0.3
342
Normal
-0.3
816
Normal
-0.3
272
Normal
-0.3
285
Tumor
-0.3
487
Tumor
-0.3
351
Tumor
-0.4
232
Normal
-0.4
187
Tumor
-0.4
965
Tumor
-0.4
367
Tumor
-0.4
391
Tumor
-0.4
535
Tumor
-0.5
331
Tumor
-0.5
665
Tumor
-0.5
161
Tumor
-0.5
857
Tumor
-0.5
858
Normal
-0.5
341
Tumor
-0.6
815
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.