MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:192.0 nTPM
HPA Brain:244.9 nTPM
GTEx:192.0 nTPM
FANTOM5:206.5 Scaled Tags Per Million
Pig:296.9 nTPM
Mouse:297.2 nTPM
Allen mouse:17.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 244.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 219.8
2586 Male, age 75, left hemisphere 271.2
2019 Male, age 18, unknown 242.6
2666 Male, age 74, left hemisphere 242.0
2828 Female, age 72, unknown 226.6
1827 Male, age 72, unknown 224.9
1870 Female, age 42, unknown 216.4
2411 Female, age 72, unknown 202.3
1833 Male, age 53, unknown 194.4
2219 Male, age 76, both hemispheres 188.9
1830 Male, age 51, unknown 188.5
Dorsal raphe nucleus
nTPM: 216.7
2047 Male, age 72, unknown 240.5
2298 Female, age 72, unknown 233.8
1828 Male, age 53, unknown 218.6
2750 Male, age 76, both hemispheres 207.7
2016 Female, age 72, unknown 183.2
Inferior colliculus
nTPM: 205.8
2097 Female, age 72, unknown 222.5
1890 Male, age 53, unknown 203.3
1848 Female, age 42, unknown 201.4
2849 Male, age 72, unknown 195.9
Median raphe nucleus
nTPM: 233.1
2220 Male, age 76, midline 233.1
Periaquaductal grey, anterior
nTPM: 244.9
1795 Male, age 51, unknown 254.9
2502 Female, age 75, unknown 242.4
1947 Male, age 18, unknown 237.4
Periaquaductal grey, dorsal
nTPM: 193.5
1840 Male, age 53, unknown 209.4
2850 Male, age 76, both hemispheres 202.8
1831 Male, age 72, unknown 185.4
2464 Female, age 72, unknown 176.5
Periaquaductal grey, lateral
nTPM: 191.5
2140 Male, age 76, both hemispheres 197.1
2272 Male, age 74, both hemispheres 191.2
2053 Male, age 18, unknown 186.1
Pretectal area
nTPM: 233.5
2007 Male, age 72, unknown 289.3
1817 Female, age 42, unknown 279.8
1944 Female, age 72, unknown 276.3
1816 Male, age 51, unknown 275.1
1815 Male, age 53, unknown 232.8
2224 Female, age 72, unknown 218.8
2407 Male, age 75, both hemispheres 216.3
2667 Female, age 75, unknown 211.0
2825 Male, age 18, unknown 201.7
2316 Male, age 76, right hemisphere 185.8
2273 Male, age 74, both hemispheres 181.5
Red nucleus
nTPM: 208.5
2584 Male, age 75, left hemisphere 263.6
2785 Male, age 18, unknown 241.4
2725 Female, age 75, unknown 213.8
1821 Female, age 72, unknown 206.1
1865 Male, age 51, unknown 205.2
2769 Male, age 72, unknown 204.2
1954 Female, age 42, unknown 199.4
2588 Male, age 74, left hemisphere 199.4
1904 Male, age 53, unknown 198.3
2227 Male, age 72, unknown 197.2
2503 Female, age 72, unknown 194.6
2823 Male, age 76, right hemisphere 179.0
Substantia nigra
nTPM: 244.8
1916 Female, age 42, unknown 303.8
2665 Male, age 74, both hemispheres 268.7
1851 Male, age 51, unknown 263.4
1941 Male, age 53, unknown 255.0
1889 Female, age 72, unknown 253.4
2583 Male, age 75, right hemisphere 244.4
2241 Male, age 72, unknown 225.0
2699 Male, age 18, unknown 217.2
2590 Female, age 75, unknown 210.7
2409 Female, age 72, unknown 205.9
Superior colliculus
nTPM: 214.7
2668 Female, age 75, unknown 263.0
2087 Female, age 72, unknown 241.9
1796 Male, age 53, unknown 241.8
2664 Male, age 75, both hemispheres 230.7
2261 Male, age 18, unknown 223.3
2587 Male, age 74, left hemisphere 196.8
1913 Female, age 42, unknown 194.6
1839 Male, age 51, unknown 193.3
1995 Male, age 72, unknown 186.4
1895 Male, age 76, right hemisphere 175.6
Ventral tegmental area
nTPM: 228.2
1915 Female, age 42, unknown 245.3
2410 Female, age 72, unknown 240.3
2218 Male, age 76, both hemispheres 236.7
2223 Female, age 72, unknown 223.9
1942 Male, age 51, unknown 218.1
2021 Male, age 53, unknown 204.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 192.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 192.0
Samples: 139

Max nTPM: 290.0
Min nTPM: 124.9
Std nTPM: 33.3
Median nTPM: 186.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 290.0
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 285.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 284.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 280.8
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 274.6
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 257.9
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 252.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 248.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 245.7
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 245.6
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 241.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 206.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 206.5
FF:10158-103A5 76 years, female 206.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 296.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 276.4
Samples: 4

Max nTPM: 338.0
Min nTPM: 240.3
Sample A Female 338.0
Sample B Female 240.3
Sample C Male 274.8
Sample D Male 252.3
Midbrain
nTPM: 296.9
Samples: 4

Max nTPM: 375.9
Min nTPM: 255.0
Sample A Female 375.9
Sample B Female 260.9
Sample C Male 295.8
Sample D Male 255.0
Periaqueductal gray
nTPM: 231.7
Samples: 3

Max nTPM: 253.1
Min nTPM: 206.2
Sample B Female 235.8
Sample C Male 253.1
Sample D Male 206.2
Superior colliculi
nTPM: 291.2
Samples: 4

Max nTPM: 329.2
Min nTPM: 266.2
Sample A Female 329.2
Sample B Female 266.2
Sample C Male 300.3
Sample D Male 269.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 297.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 297.2
Samples: 4

Max nTPM: 305.6
Min nTPM: 291.8
Sample A Male 305.6
Sample B Male 292.3
Sample C Female 291.8
Sample D Female 299.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 17.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 17.9
199390 Antisense, RP_040507_02_D11, Mouse strain C57BL/6J (56 days, male) 24.8
77620391 Antisense, RP_070205_01_E12, Mouse strain C57BL/6J (56 days, male) 11.0
77414125 Antisense, RP_070205_01_E12, Mouse strain C57BL/6J (56 days, male) 10.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org