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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SDE2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
23.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
22.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
21.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
20.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
20.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
19.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
19.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
18.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
17.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
17.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
17.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
16.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
16.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
16.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
15.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
15.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
14.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
14.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
14.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
14.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
13.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
13.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
13.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
12.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
12.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
12.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
12.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
12.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
11.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
11.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
11.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
11.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
11.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
11.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
10.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
10.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
10.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
10.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
10.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
10.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
10.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
10.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
10.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
9.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
9.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
9.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
9.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
9.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
8.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
8.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
8.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
8.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
8.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
8.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
7.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
7.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
7.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
7.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
7.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
7.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
6.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
6.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
6.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
6.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
6.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
6.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
6.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
6.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
5.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
4.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
4.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
4.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
4.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
3.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
3.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
3.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
2.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
1.4
533
Tumor
1.3
523
Tumor
1.2
975
Tumor
1.0
1031
Tumor
1.0
724
Normal
0.9
777
Tumor
0.9
425
Tumor
0.9
553
Tumor
0.9
743
Tumor
0.9
497
Tumor
0.9
1013
Tumor
0.9
957
Tumor
0.9
357
Tumor
0.9
647
Tumor
0.8
123
Tumor
0.8
881
Tumor
0.8
977
Tumor
0.8
477
Tumor
0.8
911
Tumor
0.8
131
Tumor
0.8
517
Tumor
0.8
963
Tumor
0.7
1021
Tumor
0.7
411
Tumor
0.7
921
Tumor
0.7
1025
Tumor
0.7
721
Tumor
0.7
211
Tumor
0.7
883
Tumor
0.7
493
Tumor
0.7
715
Tumor
0.6
473
Tumor
0.6
983
Tumor
0.6
823
Tumor
0.6
1041
Tumor
0.6
447
Tumor
0.6
951
Tumor
0.6
1043
Tumor
0.6
915
Tumor
0.6
483
Tumor
0.6
351
Tumor
0.6
513
Tumor
0.6
525
Tumor
0.5
861
Tumor
0.5
231
Tumor
0.5
923
Tumor
0.5
865
Tumor
0.5
697
Tumor
0.5
445
Tumor
0.5
695
Tumor
0.5
527
Tumor
0.5
355
Tumor
0.5
431
Tumor
0.5
937
Tumor
0.5
535
Tumor
0.5
661
Tumor
0.4
867
Tumor
0.4
515
Tumor
0.4
487
Tumor
0.4
857
Tumor
0.4
481
Tumor
0.4
545
Tumor
0.4
917
Tumor
0.4
737
Tumor
0.4
741
Tumor
0.4
967
Tumor
0.4
863
Tumor
0.4
395
Tumor
0.4
925
Tumor
0.4
665
Tumor
0.4
393
Tumor
0.4
817
Tumor
0.4
227
Tumor
0.4
524
Normal
0.3
327
Tumor
0.3
383
Tumor
0.3
191
Tumor
0.3
413
Tumor
0.3
471
Tumor
0.3
361
Tumor
0.3
221
Tumor
0.3
913
Tumor
0.3
785
Tumor
0.3
685
Tumor
0.3
461
Tumor
0.3
367
Tumor
0.3
955
Tumor
0.3
953
Tumor
0.3
537
Tumor
0.3
813
Tumor
0.3
415
Tumor
0.3
213
Tumor
0.3
463
Tumor
0.3
297
Tumor
0.3
943
Tumor
0.3
727
Tumor
0.3
435
Tumor
0.3
147
Tumor
0.3
635
Tumor
0.2
873
Tumor
0.2
567
Tumor
0.2
343
Tumor
0.2
536
Normal
0.2
851
Tumor
0.2
671
Tumor
0.2
557
Tumor
0.2
141
Tumor
0.2
467
Tumor
0.2
385
Tumor
0.2
443
Tumor
0.2
571
Tumor
0.2
271
Tumor
0.2
1015
Tumor
0.2
313
Tumor
0.1
615
Tumor
0.1
455
Tumor
0.1
283
Tumor
0.1
465
Tumor
0.1
451
Tumor
0.1
217
Tumor
0.1
617
Tumor
0.1
421
Tumor
0.1
498
Normal
0.1
554
Normal
0.1
341
Tumor
0.1
285
Tumor
0.1
573
Tumor
0.1
433
Tumor
0.1
814
Normal
0.1
755
Tumor
0.1
877
Tumor
0.1
135
Tumor
0.1
171
Tumor
0.1
984
Normal
0.1
958
Normal
0.1
516
Normal
0.1
391
Tumor
0.0
387
Tumor
0.0
968
Normal
0.0
478
Normal
0.0
976
Normal
0.0
277
Tumor
0.0
713
Tumor
0.0
966
Normal
0.0
518
Normal
0.0
538
Normal
0.0
261
Tumor
0.0
852
Normal
0.0
1045
Tumor
0.0
663
Tumor
0.0
267
Tumor
0.0
641
Tumor
0.0
112
Tumor
0.0
472
Normal
0.0
745
Tumor
0.0
311
Tumor
0.0
981
Tumor
0.0
482
Normal
0.0
127
Tumor
0.0
331
Tumor
0.0
815
Tumor
0.0
462
Normal
0.0
195
Tumor
0.0
375
Tumor
0.0
492
Normal
-0.1
916
Normal
-0.1
526
Normal
-0.1
978
Normal
-0.1
474
Normal
-0.1
514
Normal
-0.1
884
Normal
-0.1
714
Normal
-0.1
218
Normal
-0.1
384
Normal
-0.1
882
Normal
-0.1
138
Normal
-0.1
778
Normal
-0.1
187
Tumor
-0.1
954
Normal
-0.1
257
Tumor
-0.1
353
Tumor
-0.1
716
Normal
-0.1
964
Normal
-0.1
698
Normal
-0.1
1042
Normal
-0.1
922
Normal
-0.1
444
Normal
-0.1
494
Normal
-0.1
185
Tumor
-0.1
146
Normal
-0.1
742
Normal
-0.1
568
Normal
-0.1
528
Normal
-0.1
722
Normal
-0.1
113
Tumor
-0.1
563
Tumor
-0.1
686
Normal
-0.1
534
Normal
-0.1
918
Normal
-0.1
434
Normal
-0.1
912
Normal
-0.1
125
Tumor
-0.1
1032
Normal
-0.1
1028
Normal
-0.1
1044
Normal
-0.1
368
Normal
-0.1
627
Tumor
-0.1
914
Normal
-0.1
484
Normal
-0.1
332
Normal
-0.1
365
Tumor
-0.1
628
Normal
-0.1
696
Normal
-0.1
1046
Normal
-0.2
423
Tumor
-0.2
222
Normal
-0.2
1014
Normal
-0.2
298
Normal
-0.2
284
Normal
-0.2
161
Tumor
-0.2
448
Normal
-0.2
148
Normal
-0.2
728
Normal
-0.2
145
Tumor
-0.2
1022
Normal
-0.2
756
Normal
-0.2
192
Normal
-0.2
858
Normal
-0.2
186
Normal
-0.2
162
Normal
-0.2
136
Normal
-0.2
574
Normal
-0.2
744
Normal
-0.2
223
Tumor
-0.2
363
Tumor
-0.2
491
Tumor
-0.2
786
Normal
-0.2
1026
Normal
-0.2
924
Normal
-0.2
944
Normal
-0.2
723
Tumor
-0.2
878
Normal
-0.2
132
Normal
-0.2
212
Normal
-0.2
278
Normal
-0.2
228
Normal
-0.2
746
Normal
-0.2
412
Normal
-0.2
982
Normal
-0.2
672
Normal
-0.2
312
Normal
-0.2
874
Normal
-0.2
824
Normal
-0.2
446
Normal
-0.2
142
Normal
-0.2
952
Normal
-0.2
864
Normal
-0.2
362
Normal
-0.2
488
Normal
-0.2
314
Normal
-0.2
1027
Tumor
-0.2
352
Normal
-0.2
268
Normal
-0.2
137
Tumor
-0.2
926
Normal
-0.2
342
Normal
-0.2
427
Tumor
-0.2
816
Normal
-0.2
956
Normal
-0.2
432
Normal
-0.2
546
Normal
-0.2
616
Normal
-0.3
1016
Normal
-0.3
188
Normal
-0.3
558
Normal
-0.3
172
Normal
-0.3
328
Normal
-0.3
224
Normal
-0.3
386
Normal
-0.3
818
Normal
-0.3
364
Normal
-0.3
436
Normal
-0.3
738
Normal
-0.3
938
Normal
-0.3
456
Normal
-0.3
196
Normal
-0.3
866
Normal
-0.3
464
Normal
-0.3
286
Normal
-0.3
124
Normal
-0.3
214
Normal
-0.3
466
Normal
-0.3
366
Normal
-0.3
416
Normal
-0.3
662
Normal
-0.3
666
Normal
-0.3
272
Normal
-0.3
262
Normal
-0.3
636
Normal
-0.3
648
Normal
-0.4
572
Normal
-0.4
232
Normal
-0.4
344
Normal
-0.4
868
Normal
-0.4
862
Normal
-0.4
422
Normal
-0.4
396
Normal
-0.4
664
Normal
-0.4
642
Normal
-0.4
564
Normal
-0.4
376
Normal
-0.4
354
Normal
-0.4
126
Normal
-0.4
114
Normal
-0.4
358
Normal
-0.4
618
Normal
-0.4
356
Normal
-0.4
128
Normal
-0.4
426
Normal
-0.4
392
Normal
-0.5
388
Normal
-0.5
452
Normal
-0.5
394
Normal
-0.5
424
Normal
-0.5
468
Normal
-0.5
258
Normal
-0.5
111
Normal
-0.5
414
Normal
-0.6
428
Normal
-0.7
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
