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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ACP1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
51.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
155.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
153.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
147.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
135.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
132.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
131.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
130.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
127.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
126.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
115.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
113.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
111.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
108.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
102.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
101.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
100.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
94.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
91.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
88.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
88.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
88.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
88.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
88.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
87.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
86.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
85.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
83.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
83.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
83.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
81.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
80.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
79.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
79.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
78.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
78.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
78.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
78.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
78.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
78.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
78.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
77.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
77.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
76.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
75.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
75.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
75.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
75.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
74.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
73.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
71.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
71.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
70.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
70.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
69.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
69.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
69.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
68.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
68.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
68.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
67.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
67.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
67.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
67.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
66.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
66.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
65.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
65.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
65.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
64.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
64.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
64.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
64.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
64.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
64.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
64.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
63.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
63.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
63.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
62.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
62.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
62.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
62.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
61.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
61.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
61.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
61.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
61.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
61.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
61.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
61.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
61.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
60.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
60.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
60.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
60.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
60.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
60.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
60.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
59.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
59.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
59.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
59.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
59.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
59.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
59.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
59.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
58.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
57.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
57.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
57.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
57.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
57.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
57.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
57.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
56.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
56.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
56.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
56.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
56.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
56.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
55.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
55.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
55.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
54.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
54.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
54.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
54.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
54.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
54.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
54.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
54.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
54.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
53.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
53.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
53.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
53.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
53.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
53.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
52.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
52.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
52.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
52.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
52.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
52.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
52.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
52.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
52.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
51.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
51.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
51.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
50.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
50.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
50.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
50.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
50.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
50.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
50.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
50.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
50.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
50.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
50.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
50.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
50.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
50.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
50.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
50.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
49.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
49.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
48.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
48.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
48.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
48.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
48.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
47.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
47.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
47.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
47.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
47.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
47.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
47.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
47.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
47.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
47.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
47.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
46.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
46.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
46.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
46.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
46.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
46.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
46.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
46.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
46.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
46.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
45.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
45.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
45.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
45.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
45.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
45.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
45.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
45.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
44.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
44.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
44.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
44.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
44.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
44.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
44.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
43.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
43.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
43.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
43.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
43.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
43.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
43.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
43.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
43.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
43.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
43.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
42.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
42.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
42.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
42.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
42.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
42.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
42.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
42.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
42.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
42.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
42.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
41.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
41.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
41.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
41.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
41.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
41.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
41.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
41.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
41.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
41.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
40.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
40.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
40.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
40.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
40.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
40.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
40.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
40.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
40.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
40.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
39.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
39.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
39.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
39.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
39.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
38.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
38.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
38.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
38.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
38.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
38.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
38.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
38.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
37.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
37.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
37.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
37.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
36.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
36.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
36.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
36.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
36.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
36.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
36.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
36.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
36.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
35.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
35.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
35.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
35.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
35.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
34.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
34.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
34.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
34.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
34.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
34.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
34.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
34.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
34.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
33.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
33.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
33.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
33.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
33.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
33.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
33.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
33.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
33.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
33.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
33.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
33.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
32.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
32.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
32.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
32.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
31.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
31.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
31.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
31.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
31.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
31.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
31.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
31.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
31.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
31.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
30.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
30.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
30.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
29.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
29.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
29.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
29.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
29.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
29.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
29.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
29.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
29.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
29.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
28.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
28.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
28.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
28.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
27.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
27.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
27.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
27.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
26.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
26.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
25.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
25.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
24.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
24.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
24.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
23.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
21.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
21.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
21.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
20.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
20.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
20.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
20.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
20.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
18.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
17.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
16.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
16.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
15.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
12.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
8.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ACP1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
55.0
Number of samples
231
Samples
Sample
Description
TPM
DO45193
0 years, female, NA, stage:4, dead, 120 days
123.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
122.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
120.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
119.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
107.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
105.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
103.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
103.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
102.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
100.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
100.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
92.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
92.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
90.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
89.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
89.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
89.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
86.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
86.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
86.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
86.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
85.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
85.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
84.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
83.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
76.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
76.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
75.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
75.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
75.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
74.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
74.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
73.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
72.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
72.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
72.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
72.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
71.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
70.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
70.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
70.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
70.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
69.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
69.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
69.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
68.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
68.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
68.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
67.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
66.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
66.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
65.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
65.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
65.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
64.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
64.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
64.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
64.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
63.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
62.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
62.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
62.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
62.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
62.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
62.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
62.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
62.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
61.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
61.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
61.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
61.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
61.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
61.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
60.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
59.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
59.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
59.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
59.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
59.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
58.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
58.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
58.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
58.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
58.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
58.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
57.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
57.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
57.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
57.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
57.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
56.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
56.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
56.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
56.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
55.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
55.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
55.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
55.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
55.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
55.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
55.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
55.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
55.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
54.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
53.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
53.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
53.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
53.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
53.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
52.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
52.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
52.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
52.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
51.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
51.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
51.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
51.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
50.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
50.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
50.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
50.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
50.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
50.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
50.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
49.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
49.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
49.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
49.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
48.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
48.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
48.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
47.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
47.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
47.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
46.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
46.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
46.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
46.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
46.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
45.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
45.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
45.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
45.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
45.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
45.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
44.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
44.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
44.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
44.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
44.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
44.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
44.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
44.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
43.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
43.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
43.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
43.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
43.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
43.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
43.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
43.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
43.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
42.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
42.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
42.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
42.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
42.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
42.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
42.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
42.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
41.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
40.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
40.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
40.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
39.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
39.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
39.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
39.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
39.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
39.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
38.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
38.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
38.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
38.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
38.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
38.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
38.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
38.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
38.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
38.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
38.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
38.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
38.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
38.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
38.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
37.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
37.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
37.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
37.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
36.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
36.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
35.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
35.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
35.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
35.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
35.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
35.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
35.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
34.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
34.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
34.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
34.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
33.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
33.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
32.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
32.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
32.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
32.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
31.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
31.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
31.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
30.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
29.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
28.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
27.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
27.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
27.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
26.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
25.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
21.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
20.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
877
Tumor
0.8
131
Tumor
0.8
1027
Tumor
0.7
815
Tumor
0.7
517
Tumor
0.6
393
Tumor
0.5
423
Tumor
0.5
695
Tumor
0.5
356
Normal
0.4
1021
Tumor
0.4
743
Tumor
0.4
227
Tumor
0.4
567
Tumor
0.4
271
Tumor
0.4
951
Tumor
0.4
285
Tumor
0.4
465
Tumor
0.4
698
Normal
0.4
546
Normal
0.4
727
Tumor
0.4
571
Tumor
0.3
416
Normal
0.3
328
Normal
0.3
863
Tumor
0.3
125
Tumor
0.3
357
Tumor
0.3
741
Tumor
0.3
363
Tumor
0.3
196
Normal
0.3
983
Tumor
0.3
1013
Tumor
0.3
477
Tumor
0.3
924
Normal
0.3
364
Normal
0.3
327
Tumor
0.3
925
Tumor
0.3
967
Tumor
0.3
427
Tumor
0.3
724
Normal
0.2
515
Tumor
0.2
534
Normal
0.2
113
Tumor
0.2
376
Normal
0.2
1031
Tumor
0.2
445
Tumor
0.2
923
Tumor
0.2
128
Normal
0.2
554
Normal
0.2
918
Normal
0.2
745
Tumor
0.2
523
Tumor
0.2
472
Normal
0.2
462
Normal
0.2
428
Normal
0.2
785
Tumor
0.2
977
Tumor
0.2
728
Normal
0.2
366
Normal
0.2
214
Normal
0.2
858
Normal
0.2
421
Tumor
0.2
365
Tumor
0.2
981
Tumor
0.2
228
Normal
0.2
367
Tumor
0.2
952
Normal
0.2
448
Normal
0.2
696
Normal
0.2
1045
Tumor
0.2
451
Tumor
0.2
186
Normal
0.2
553
Tumor
0.2
912
Normal
0.1
664
Normal
0.1
435
Tumor
0.1
545
Tumor
0.1
447
Tumor
0.1
1043
Tumor
0.1
387
Tumor
0.1
422
Normal
0.1
662
Normal
0.1
537
Tumor
0.1
538
Normal
0.1
518
Normal
0.1
498
Normal
0.1
391
Tumor
0.1
744
Normal
0.1
953
Tumor
0.1
494
Normal
0.1
755
Tumor
0.1
722
Normal
0.1
864
Normal
0.1
148
Normal
0.1
484
Normal
0.1
533
Tumor
0.1
943
Tumor
0.1
737
Tumor
0.1
746
Normal
0.1
114
Normal
0.1
358
Normal
0.1
874
Normal
0.1
298
Normal
0.1
461
Tumor
0.1
354
Normal
0.1
297
Tumor
0.1
222
Normal
0.1
452
Normal
0.1
516
Normal
0.1
351
Tumor
0.1
883
Tumor
0.1
232
Normal
0.1
471
Tumor
0.1
666
Normal
0.1
697
Tumor
0.1
921
Tumor
0.1
342
Normal
0.1
412
Normal
0.1
956
Normal
0.1
944
Normal
0.1
911
Tumor
0.1
424
Normal
0.1
914
Normal
0.1
756
Normal
0.1
483
Tumor
0.1
527
Tumor
0.1
1032
Normal
0.1
482
Normal
0.1
425
Tumor
0.1
818
Normal
0.1
1016
Normal
0.1
466
Normal
0.1
426
Normal
0.1
162
Normal
0.1
955
Tumor
0.0
617
Tumor
0.0
777
Tumor
0.0
488
Normal
0.0
723
Tumor
0.0
738
Normal
0.0
1014
Normal
0.0
272
Normal
0.0
355
Tumor
0.0
432
Normal
0.0
1026
Normal
0.0
111
Normal
0.0
824
Normal
0.0
362
Normal
0.0
284
Normal
0.0
436
Normal
0.0
132
Normal
0.0
978
Normal
0.0
474
Normal
0.0
431
Tumor
0.0
528
Normal
0.0
386
Normal
0.0
922
Normal
0.0
716
Normal
0.0
982
Normal
0.0
742
Normal
0.0
262
Normal
0.0
1042
Normal
0.0
714
Normal
0.0
618
Normal
0.0
525
Tumor
0.0
257
Tumor
0.0
926
Normal
0.0
314
Normal
0.0
218
Normal
0.0
212
Normal
0.0
137
Tumor
0.0
413
Tumor
0.0
286
Normal
0.0
368
Normal
0.0
394
Normal
0.0
478
Normal
0.0
463
Tumor
0.0
361
Tumor
0.0
267
Tumor
0.0
261
Tumor
0.0
661
Tumor
0.0
142
Normal
0.0
172
Normal
0.0
867
Tumor
0.0
866
Normal
0.0
873
Tumor
0.0
878
Normal
0.0
384
Normal
-0.1
415
Tumor
-0.1
975
Tumor
-0.1
392
Normal
-0.1
192
Normal
-0.1
1015
Tumor
-0.1
686
Normal
-0.1
513
Tumor
-0.1
411
Tumor
-0.1
1046
Normal
-0.1
558
Normal
-0.1
572
Normal
-0.1
481
Tumor
-0.1
195
Tumor
-0.1
816
Normal
-0.1
984
Normal
-0.1
968
Normal
-0.1
341
Tumor
-0.1
564
Normal
-0.1
396
Normal
-0.1
446
Normal
-0.1
147
Tumor
-0.1
383
Tumor
-0.1
1028
Normal
-0.1
188
Normal
-0.1
123
Tumor
-0.1
526
Normal
-0.1
268
Normal
-0.1
1022
Normal
-0.1
375
Tumor
-0.1
112
Tumor
-0.1
456
Normal
-0.1
126
Normal
-0.1
332
Normal
-0.1
685
Tumor
-0.1
813
Tumor
-0.1
443
Tumor
-0.1
884
Normal
-0.1
313
Tumor
-0.1
127
Tumor
-0.1
665
Tumor
-0.1
568
Normal
-0.1
312
Normal
-0.1
278
Normal
-0.1
672
Normal
-0.1
938
Normal
-0.1
976
Normal
-0.1
124
Normal
-0.1
671
Tumor
-0.1
258
Normal
-0.1
433
Tumor
-0.2
283
Tumor
-0.2
868
Normal
-0.2
958
Normal
-0.2
136
Normal
-0.2
344
Normal
-0.2
492
Normal
-0.2
823
Tumor
-0.2
464
Normal
-0.2
536
Normal
-0.2
1041
Tumor
-0.2
715
Tumor
-0.2
468
Normal
-0.2
221
Tumor
-0.2
857
Tumor
-0.2
786
Normal
-0.2
487
Tumor
-0.2
353
Tumor
-0.2
778
Normal
-0.2
473
Tumor
-0.2
434
Normal
-0.2
352
Normal
-0.2
514
Normal
-0.2
574
Normal
-0.2
444
Normal
-0.2
963
Tumor
-0.2
915
Tumor
-0.2
852
Normal
-0.2
615
Tumor
-0.2
185
Tumor
-0.2
713
Tumor
-0.2
213
Tumor
-0.2
388
Normal
-0.2
146
Normal
-0.2
882
Normal
-0.2
957
Tumor
-0.3
231
Tumor
-0.3
648
Normal
-0.3
964
Normal
-0.3
497
Tumor
-0.3
141
Tumor
-0.3
1044
Normal
-0.3
224
Normal
-0.3
1025
Tumor
-0.3
385
Tumor
-0.3
636
Normal
-0.3
557
Tumor
-0.3
217
Tumor
-0.3
814
Normal
-0.3
817
Tumor
-0.3
913
Tumor
-0.3
414
Normal
-0.3
491
Tumor
-0.3
524
Normal
-0.3
663
Tumor
-0.3
862
Normal
-0.3
138
Normal
-0.3
616
Normal
-0.3
917
Tumor
-0.3
455
Tumor
-0.4
881
Tumor
-0.4
343
Tumor
-0.4
642
Normal
-0.4
563
Tumor
-0.4
135
Tumor
-0.4
916
Normal
-0.4
535
Tumor
-0.4
161
Tumor
-0.4
635
Tumor
-0.4
851
Tumor
-0.4
211
Tumor
-0.4
191
Tumor
-0.4
331
Tumor
-0.4
395
Tumor
-0.4
187
Tumor
-0.4
954
Normal
-0.5
861
Tumor
-0.5
628
Normal
-0.5
277
Tumor
-0.5
721
Tumor
-0.5
467
Tumor
-0.5
573
Tumor
-0.5
223
Tumor
-0.6
311
Tumor
-0.6
937
Tumor
-0.6
171
Tumor
-0.6
145
Tumor
-0.7
627
Tumor
-0.7
493
Tumor
-0.7
965
Tumor
-0.7
647
Tumor
-0.7
865
Tumor
-0.8
641
Tumor
-0.8
966
Normal
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
