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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PKLR is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
60.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
583.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
384.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
370.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
369.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
362.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
319.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
282.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
265.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
264.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
261.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
260.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
250.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
244.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
225.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
222.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
196.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
180.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
177.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
173.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
167.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
159.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
159.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
158.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
152.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
151.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
151.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
150.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
147.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
138.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
138.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
137.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
136.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
136.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
134.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
129.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
124.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
122.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
122.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
122.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
121.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
121.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
119.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
117.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
116.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
115.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
114.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
114.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
112.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
112.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
111.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
111.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
110.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
109.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
109.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
106.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
102.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
101.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
100.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
98.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
98.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
97.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
97.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
97.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
96.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
94.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
94.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
93.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
93.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
91.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
91.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
91.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
91.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
90.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
90.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
88.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
87.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
86.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
84.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
83.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
80.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
80.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
79.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
79.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
79.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
78.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
77.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
77.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
76.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
76.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
76.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
75.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
75.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
75.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
75.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
75.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
74.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
74.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
74.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
73.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
72.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
71.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
70.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
70.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
68.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
68.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
68.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
67.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
67.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
67.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
66.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
66.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
65.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
65.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
64.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
63.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
62.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
62.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
62.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
61.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
61.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
61.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
61.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
60.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
60.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
60.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
60.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
59.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
59.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
59.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
58.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
58.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
58.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
57.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
56.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
55.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
55.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
54.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
54.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
53.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
53.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
52.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
52.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
52.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
52.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
52.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
52.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
52.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
51.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
50.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
50.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
50.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
50.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
49.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
49.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
48.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
48.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
48.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
48.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
47.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
47.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
46.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
46.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
46.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
46.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
45.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
44.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
44.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
44.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
44.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
43.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
43.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
43.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
43.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
42.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
42.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
42.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
42.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
42.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
41.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
41.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
41.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
41.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
41.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
41.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
40.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
40.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
40.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
40.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
40.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
40.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
40.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
40.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
40.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
40.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
39.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
39.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
39.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
39.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
38.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
38.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
37.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
37.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
36.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
36.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
36.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
35.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
35.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
35.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
35.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
35.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
35.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
35.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
34.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
34.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
34.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
33.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
33.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
33.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
33.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
32.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
32.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
32.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
31.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
31.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
31.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
31.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
31.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
31.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
30.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
30.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
30.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
30.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
29.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
29.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
29.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
29.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
29.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
29.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
29.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
28.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
28.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
28.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
27.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
27.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
27.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
27.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
26.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
26.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
26.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
26.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
26.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
26.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
26.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
25.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
25.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
25.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
25.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
25.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
25.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
24.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
24.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
24.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
23.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
23.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
23.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
22.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
22.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
22.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
22.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
21.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
21.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
20.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
20.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
20.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
20.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
20.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
19.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
19.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
19.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
19.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
19.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
19.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
18.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
18.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
18.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
18.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
18.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
17.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
17.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
15.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
15.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
15.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
14.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
13.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
13.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
13.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
12.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
12.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
12.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
12.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
12.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
11.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
10.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
9.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
9.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
8.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
8.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
7.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
7.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
6.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
6.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
5.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
5.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
4.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
3.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
3.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
3.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
2.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
1.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
1.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PKLR is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
51.3
Number of samples
231
Samples
Sample
Description
TPM
DO48701
0 years, male, NA, stage:2, alive, 780 days
319.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
280.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
263.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
248.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
235.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
208.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
199.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
194.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
164.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
136.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
135.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
133.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
131.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
127.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
126.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
125.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
121.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
121.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
116.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
115.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
110.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
109.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
108.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
104.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
103.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
102.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
102.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
102.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
101.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
93.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
93.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
92.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
89.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
86.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
86.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
85.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
84.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
83.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
83.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
81.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
78.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
78.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
77.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
76.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
75.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
75.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
74.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
71.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
71.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
71.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
70.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
70.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
70.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
69.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
69.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
69.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
69.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
69.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
68.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
67.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
66.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
66.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
66.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
65.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
64.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
64.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
63.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
62.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
61.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
61.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
58.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
57.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
57.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
54.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
54.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
54.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
54.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
53.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
53.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
52.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
52.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
51.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
51.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
51.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
51.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
51.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
50.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
49.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
48.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
48.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
48.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
47.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
47.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
47.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
46.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
46.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
45.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
45.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
45.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
44.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
43.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
43.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
43.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
42.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
42.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
41.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
41.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
41.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
40.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
40.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
39.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
39.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
39.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
38.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
38.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
37.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
37.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
37.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
36.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
36.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
36.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
35.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
35.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
35.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
35.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
34.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
34.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
34.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
34.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
33.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
33.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
33.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
32.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
32.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
31.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
31.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
31.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
31.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
31.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
30.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
30.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
29.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
28.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
28.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
28.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
26.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
26.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
26.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
26.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
25.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
25.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
25.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
25.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
25.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
25.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
24.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
24.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
24.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
23.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
23.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
22.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
22.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
22.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
22.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
21.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
21.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
21.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
21.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
21.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
21.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
21.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
21.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
19.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
19.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
19.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
19.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
19.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
19.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
19.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
19.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
19.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
18.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
18.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
17.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
17.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
17.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
16.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
15.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
15.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
14.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
14.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
14.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
13.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
8.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
4.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
4.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
4.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
3.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
3.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
2.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
2.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
2.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
2.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
1.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
1.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
1.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
1.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
1.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
1.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
1.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
777
Tumor
2.3
863
Tumor
1.4
523
Tumor
1.4
515
Tumor
1.2
461
Tumor
1.2
513
Tumor
1.1
365
Tumor
1.1
393
Tumor
1.0
785
Tumor
1.0
455
Tumor
1.0
466
Normal
1.0
162
Normal
1.0
858
Normal
0.9
921
Tumor
0.9
222
Normal
0.9
436
Normal
0.9
298
Normal
0.8
714
Normal
0.8
615
Tumor
0.8
1043
Tumor
0.8
394
Normal
0.8
912
Normal
0.8
648
Normal
0.8
357
Tumor
0.8
1026
Normal
0.8
484
Normal
0.7
882
Normal
0.7
361
Tumor
0.7
428
Normal
0.7
464
Normal
0.7
824
Normal
0.7
664
Normal
0.7
432
Normal
0.7
462
Normal
0.7
756
Normal
0.7
938
Normal
0.6
342
Normal
0.6
482
Normal
0.6
131
Tumor
0.6
534
Normal
0.6
414
Normal
0.6
136
Normal
0.6
172
Normal
0.6
472
Normal
0.6
186
Normal
0.6
424
Normal
0.6
728
Normal
0.6
327
Tumor
0.6
746
Normal
0.5
818
Normal
0.5
111
Normal
0.5
738
Normal
0.5
271
Tumor
0.5
196
Normal
0.5
635
Tumor
0.5
862
Normal
0.5
148
Normal
0.5
445
Tumor
0.5
868
Normal
0.5
123
Tumor
0.5
964
Normal
0.5
1046
Normal
0.5
1032
Normal
0.5
392
Normal
0.5
141
Tumor
0.5
723
Tumor
0.5
132
Normal
0.4
737
Tumor
0.4
328
Normal
0.4
481
Tumor
0.4
518
Normal
0.4
1027
Tumor
0.4
786
Normal
0.4
627
Tumor
0.4
957
Tumor
0.4
864
Normal
0.4
567
Tumor
0.4
422
Normal
0.4
952
Normal
0.4
431
Tumor
0.4
528
Normal
0.4
426
Normal
0.4
1022
Normal
0.4
564
Normal
0.4
376
Normal
0.4
618
Normal
0.3
358
Normal
0.3
278
Normal
0.3
187
Tumor
0.3
314
Normal
0.3
128
Normal
0.3
147
Tumor
0.3
223
Tumor
0.3
698
Normal
0.3
446
Normal
0.3
616
Normal
0.3
366
Normal
0.3
456
Normal
0.3
1016
Normal
0.3
978
Normal
0.3
488
Normal
0.3
1014
Normal
0.3
742
Normal
0.3
958
Normal
0.3
232
Normal
0.3
137
Tumor
0.3
884
Normal
0.2
142
Normal
0.2
138
Normal
0.2
435
Tumor
0.2
452
Normal
0.2
666
Normal
0.2
866
Normal
0.2
412
Normal
0.2
258
Normal
0.2
755
Tumor
0.2
448
Normal
0.2
1042
Normal
0.2
922
Normal
0.2
451
Tumor
0.2
286
Normal
0.2
114
Normal
0.2
218
Normal
0.2
416
Normal
0.2
465
Tumor
0.2
628
Normal
0.1
722
Normal
0.1
146
Normal
0.1
214
Normal
0.1
816
Normal
0.1
356
Normal
0.1
955
Tumor
0.1
926
Normal
0.1
944
Normal
0.1
312
Normal
0.1
171
Tumor
0.1
982
Normal
0.1
968
Normal
0.1
874
Normal
0.1
514
Normal
0.1
924
Normal
0.1
396
Normal
0.1
474
Normal
0.1
127
Tumor
0.1
387
Tumor
0.1
953
Tumor
0.1
391
Tumor
0.1
925
Tumor
0.1
332
Normal
0.1
563
Tumor
0.0
386
Normal
0.0
966
Normal
0.0
262
Normal
0.0
527
Tumor
0.0
494
Normal
0.0
297
Tumor
0.0
976
Normal
0.0
642
Normal
0.0
388
Normal
0.0
368
Normal
0.0
878
Normal
0.0
716
Normal
0.0
956
Normal
0.0
161
Tumor
0.0
1045
Tumor
0.0
778
Normal
0.0
914
Normal
0.0
354
Normal
0.0
918
Normal
0.0
617
Tumor
0.0
188
Normal
0.0
272
Normal
0.0
516
Normal
0.0
744
Normal
0.0
364
Normal
0.0
228
Normal
0.0
546
Normal
0.0
696
Normal
-0.1
537
Tumor
-0.1
497
Tumor
-0.1
867
Tumor
-0.1
663
Tumor
-0.1
126
Normal
-0.1
468
Normal
-0.1
526
Normal
-0.1
636
Normal
-0.1
231
Tumor
-0.1
362
Normal
-0.1
572
Normal
-0.1
574
Normal
-0.1
124
Normal
-0.1
352
Normal
-0.1
852
Normal
-0.1
1021
Tumor
-0.2
267
Tumor
-0.2
665
Tumor
-0.2
568
Normal
-0.2
558
Normal
-0.2
662
Normal
-0.2
284
Normal
-0.2
212
Normal
-0.2
261
Tumor
-0.2
851
Tumor
-0.2
433
Tumor
-0.2
1025
Tumor
-0.2
984
Normal
-0.3
423
Tumor
-0.3
413
Tumor
-0.3
192
Normal
-0.3
873
Tumor
-0.3
813
Tumor
-0.3
145
Tumor
-0.3
344
Normal
-0.3
857
Tumor
-0.3
741
Tumor
-0.3
191
Tumor
-0.3
487
Tumor
-0.3
1044
Normal
-0.3
877
Tumor
-0.3
883
Tumor
-0.3
554
Normal
-0.4
425
Tumor
-0.4
185
Tumor
-0.4
916
Normal
-0.4
443
Tumor
-0.4
471
Tumor
-0.4
915
Tumor
-0.4
686
Normal
-0.4
434
Normal
-0.4
517
Tumor
-0.5
478
Normal
-0.5
981
Tumor
-0.5
553
Tumor
-0.5
533
Tumor
-0.5
217
Tumor
-0.5
268
Normal
-0.5
911
Tumor
-0.5
1031
Tumor
-0.5
341
Tumor
-0.5
224
Normal
-0.5
421
Tumor
-0.5
384
Normal
-0.5
814
Normal
-0.6
415
Tumor
-0.6
954
Normal
-0.6
815
Tumor
-0.6
913
Tumor
-0.6
1028
Normal
-0.6
444
Normal
-0.6
353
Tumor
-0.6
672
Normal
-0.6
721
Tumor
-0.6
524
Normal
-0.6
221
Tumor
-0.6
743
Tumor
-0.6
483
Tumor
-0.7
977
Tumor
-0.7
277
Tumor
-0.7
525
Tumor
-0.7
975
Tumor
-0.7
473
Tumor
-0.7
477
Tumor
-0.7
492
Normal
-0.7
695
Tumor
-0.7
195
Tumor
-0.7
865
Tumor
-0.7
1013
Tumor
-0.8
498
Normal
-0.8
963
Tumor
-0.8
881
Tumor
-0.8
965
Tumor
-0.8
745
Tumor
-0.8
647
Tumor
-0.9
641
Tumor
-0.9
493
Tumor
-0.9
715
Tumor
-0.9
823
Tumor
-0.9
257
Tumor
-0.9
727
Tumor
-1.0
967
Tumor
-1.0
536
Normal
-1.0
1041
Tumor
-1.0
861
Tumor
-1.0
113
Tumor
-1.0
213
Tumor
-1.0
538
Normal
-1.1
135
Tumor
-1.1
557
Tumor
-1.1
571
Tumor
-1.2
923
Tumor
-1.2
411
Tumor
-1.2
355
Tumor
-1.2
724
Normal
-1.2
112
Tumor
-1.2
363
Tumor
-1.2
311
Tumor
-1.2
383
Tumor
-1.2
467
Tumor
-1.3
313
Tumor
-1.3
227
Tumor
-1.3
447
Tumor
-1.3
1015
Tumor
-1.3
283
Tumor
-1.3
375
Tumor
-1.3
125
Tumor
-1.4
463
Tumor
-1.4
351
Tumor
-1.4
395
Tumor
-1.5
685
Tumor
-1.5
367
Tumor
-1.5
343
Tumor
-1.5
983
Tumor
-1.6
917
Tumor
-1.6
285
Tumor
-1.6
951
Tumor
-1.6
385
Tumor
-1.6
491
Tumor
-1.6
713
Tumor
-1.6
937
Tumor
-1.6
427
Tumor
-1.7
545
Tumor
-1.7
671
Tumor
-1.7
943
Tumor
-1.7
331
Tumor
-1.7
573
Tumor
-1.8
817
Tumor
-1.8
697
Tumor
-1.9
535
Tumor
-2.1
661
Tumor
-2.4
211
Tumor
-2.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.