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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ILF2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
59.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
251.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
217.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
209.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
194.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
190.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
179.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
163.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
160.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
156.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
156.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
155.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
148.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
145.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
143.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
139.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
139.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
137.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
136.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
129.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
128.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
128.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
122.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
122.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
121.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
121.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
120.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
120.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
118.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
117.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
116.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
115.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
112.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
112.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
111.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
110.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
110.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
108.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
106.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
106.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
104.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
104.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
103.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
101.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
100.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
97.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
97.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
97.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
97.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
97.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
95.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
95.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
93.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
93.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
92.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
92.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
92.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
91.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
91.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
91.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
90.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
90.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
90.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
89.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
89.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
88.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
87.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
87.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
85.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
85.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
85.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
84.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
84.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
84.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
83.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
83.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
83.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
82.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
82.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
82.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
82.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
82.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
81.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
80.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
79.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
78.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
78.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
77.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
77.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
76.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
76.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
75.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
75.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
74.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
74.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
73.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
73.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
73.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
72.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
72.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
72.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
72.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
71.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
71.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
70.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
69.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
68.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
67.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
67.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
67.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
67.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
67.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
67.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
67.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
66.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
66.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
66.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
66.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
66.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
66.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
65.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
65.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
65.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
65.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
65.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
64.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
64.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
64.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
63.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
63.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
63.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
63.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
62.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
62.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
62.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
62.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
61.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
61.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
61.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
61.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
61.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
61.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
60.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
60.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
60.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
60.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
60.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
59.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
59.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
59.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
59.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
59.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
59.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
58.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
58.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
58.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
58.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
57.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
57.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
57.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
57.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
57.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
57.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
56.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
55.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
55.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
55.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
55.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
55.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
55.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
54.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
54.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
54.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
54.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
54.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
54.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
53.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
53.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
53.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
53.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
53.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
53.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
52.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
52.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
52.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
51.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
51.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
51.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
51.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
51.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
51.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
50.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
50.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
50.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
49.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
49.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
49.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
49.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
49.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
48.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
48.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
48.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
48.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
48.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
47.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
47.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
47.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
47.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
47.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
46.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
46.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
46.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
46.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
46.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
46.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
45.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
45.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
45.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
45.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
45.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
44.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
44.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
44.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
44.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
44.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
43.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
43.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
43.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
43.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
42.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
42.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
42.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
42.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
42.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
42.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
41.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
41.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
41.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
41.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
40.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
40.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
40.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
40.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
40.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
40.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
39.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
39.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
39.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
39.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
39.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
39.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
39.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
39.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
38.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
37.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
37.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
37.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
37.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
36.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
36.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
36.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
36.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
36.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
35.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
35.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
35.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
35.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
34.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
34.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
34.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
34.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
34.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
33.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
33.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
33.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
33.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
33.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
32.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
32.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
32.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
31.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
31.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
31.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
31.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
31.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
30.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
30.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
30.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
30.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
30.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
30.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
29.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
29.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
28.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
28.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
28.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
27.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
27.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
26.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
26.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
26.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
26.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
26.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
26.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
26.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
26.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
26.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
25.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
25.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
25.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
25.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
25.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
24.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
24.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
24.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
24.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
23.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
23.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
23.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
22.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
22.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
21.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
21.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
21.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
21.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
21.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
21.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
20.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
20.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
20.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
20.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
19.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
18.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
18.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
17.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
17.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
17.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
16.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
16.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
16.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
16.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
15.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
15.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
13.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
13.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
13.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
13.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
12.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
11.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
11.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
11.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
10.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
10.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
10.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
7.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ILF2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
90.1
Number of samples
231
Samples
Sample
Description
TPM
DO23521
0 years, male, NA, stage:3, alive, 1110 days
278.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
260.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
236.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
210.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
208.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
202.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
194.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
185.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
181.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
176.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
172.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
172.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
171.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
171.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
170.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
169.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
166.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
158.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
155.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
149.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
146.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
139.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
138.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
137.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
137.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
136.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
136.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
133.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
133.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
132.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
131.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
131.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
131.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
129.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
129.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
129.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
128.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
127.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
127.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
127.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
127.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
126.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
126.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
125.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
124.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
123.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
123.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
122.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
122.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
121.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
120.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
119.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
119.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
119.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
118.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
115.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
114.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
113.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
112.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
111.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
111.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
111.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
109.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
108.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
107.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
107.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
106.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
104.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
104.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
104.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
104.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
104.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
103.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
103.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
102.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
102.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
101.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
100.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
100.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
100.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
100.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
99.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
99.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
99.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
98.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
98.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
98.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
97.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
96.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
96.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
95.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
95.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
94.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
94.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
94.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
93.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
93.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
93.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
93.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
90.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
90.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
90.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
89.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
89.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
88.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
87.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
87.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
86.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
85.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
85.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
84.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
84.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
83.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
83.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
83.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
83.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
83.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
82.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
81.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
81.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
81.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
81.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
80.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
79.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
79.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
78.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
78.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
77.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
77.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
76.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
75.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
75.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
75.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
74.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
74.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
73.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
73.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
72.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
72.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
72.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
72.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
71.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
71.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
71.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
71.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
71.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
70.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
69.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
69.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
68.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
68.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
67.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
67.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
67.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
67.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
66.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
66.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
66.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
65.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
65.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
65.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
64.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
64.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
63.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
63.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
63.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
63.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
62.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
62.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
61.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
61.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
60.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
60.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
60.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
59.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
58.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
57.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
56.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
56.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
55.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
54.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
53.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
53.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
53.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
52.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
52.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
52.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
52.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
51.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
50.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
50.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
49.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
49.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
48.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
48.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
48.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
48.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
47.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
47.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
47.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
46.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
46.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
45.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
45.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
45.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
45.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
44.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
44.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
44.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
43.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
41.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
39.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
38.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
37.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
36.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
34.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
34.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
33.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
32.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
31.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
30.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
30.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
30.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
29.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
24.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
23.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
23.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
23.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
22.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
21.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
18.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
567
Tumor
1.1
743
Tumor
0.9
285
Tumor
0.7
331
Tumor
0.7
367
Tumor
0.6
413
Tumor
0.6
881
Tumor
0.5
431
Tumor
0.5
351
Tumor
0.5
171
Tumor
0.5
467
Tumor
0.5
131
Tumor
0.5
271
Tumor
0.5
463
Tumor
0.5
813
Tumor
0.5
815
Tumor
0.4
983
Tumor
0.4
427
Tumor
0.4
375
Tumor
0.4
123
Tumor
0.4
727
Tumor
0.4
967
Tumor
0.4
661
Tumor
0.4
724
Normal
0.4
385
Tumor
0.4
737
Tumor
0.4
877
Tumor
0.4
461
Tumor
0.4
217
Tumor
0.3
1031
Tumor
0.3
445
Tumor
0.3
443
Tumor
0.3
965
Tumor
0.3
777
Tumor
0.3
277
Tumor
0.3
113
Tumor
0.3
545
Tumor
0.3
423
Tumor
0.3
977
Tumor
0.3
865
Tumor
0.3
383
Tumor
0.3
227
Tumor
0.3
447
Tumor
0.3
267
Tumor
0.3
357
Tumor
0.3
365
Tumor
0.3
685
Tumor
0.3
191
Tumor
0.3
297
Tumor
0.3
663
Tumor
0.3
814
Normal
0.3
433
Tumor
0.3
395
Tumor
0.3
557
Tumor
0.3
671
Tumor
0.3
211
Tumor
0.3
917
Tumor
0.3
943
Tumor
0.2
665
Tumor
0.2
393
Tumor
0.2
125
Tumor
0.2
523
Tumor
0.2
951
Tumor
0.2
363
Tumor
0.2
135
Tumor
0.2
641
Tumor
0.2
353
Tumor
0.2
455
Tumor
0.2
515
Tumor
0.2
355
Tumor
0.2
1025
Tumor
0.2
112
Tumor
0.2
451
Tumor
0.2
411
Tumor
0.2
517
Tumor
0.2
785
Tumor
0.2
817
Tumor
0.2
535
Tumor
0.2
221
Tumor
0.2
195
Tumor
0.2
192
Normal
0.2
161
Tumor
0.2
425
Tumor
0.2
863
Tumor
0.2
343
Tumor
0.2
851
Tumor
0.1
127
Tumor
0.1
421
Tumor
0.1
268
Normal
0.1
867
Tumor
0.1
1015
Tumor
0.1
975
Tumor
0.1
913
Tumor
0.1
185
Tumor
0.1
497
Tumor
0.1
715
Tumor
0.1
1041
Tumor
0.1
223
Tumor
0.1
953
Tumor
0.1
311
Tumor
0.1
465
Tumor
0.1
147
Tumor
0.1
921
Tumor
0.1
414
Normal
0.1
126
Normal
0.1
213
Tumor
0.1
1021
Tumor
0.1
137
Tumor
0.1
571
Tumor
0.1
187
Tumor
0.1
444
Normal
0.1
188
Normal
0.1
527
Tumor
0.1
434
Normal
0.1
391
Tumor
0.1
146
Normal
0.1
283
Tumor
0.1
124
Normal
0.1
354
Normal
0.0
473
Tumor
0.0
464
Normal
0.0
483
Tumor
0.0
487
Tumor
0.0
272
Normal
0.0
314
Normal
0.0
384
Normal
0.0
471
Tumor
0.0
695
Tumor
0.0
358
Normal
0.0
937
Tumor
0.0
368
Normal
0.0
426
Normal
0.0
422
Normal
0.0
141
Tumor
0.0
428
Normal
0.0
186
Normal
0.0
262
Normal
0.0
172
Normal
0.0
435
Tumor
0.0
352
Normal
0.0
963
Tumor
0.0
452
Normal
0.0
883
Tumor
0.0
361
Tumor
0.0
627
Tumor
0.0
873
Tumor
0.0
162
Normal
0.0
432
Normal
0.0
386
Normal
0.0
332
Normal
0.0
148
Normal
0.0
573
Tumor
0.0
138
Normal
0.0
114
Normal
0.0
741
Tumor
0.0
721
Tumor
0.0
261
Tumor
0.0
478
Normal
0.0
145
Tumor
0.0
424
Normal
0.0
513
Tumor
0.0
344
Normal
0.0
366
Normal
0.0
388
Normal
0.0
278
Normal
0.0
111
Normal
0.0
456
Normal
0.0
128
Normal
0.0
713
Tumor
0.0
1045
Tumor
0.0
132
Normal
0.0
362
Normal
0.0
1027
Tumor
0.0
342
Normal
0.0
861
Tumor
0.0
923
Tumor
0.0
394
Normal
0.0
446
Normal
0.0
536
Normal
-0.1
662
Normal
-0.1
396
Normal
-0.1
468
Normal
-0.1
436
Normal
-0.1
258
Normal
-0.1
635
Tumor
-0.1
916
Normal
-0.1
563
Tumor
-0.1
214
Normal
-0.1
955
Tumor
-0.1
136
Normal
-0.1
298
Normal
-0.1
341
Tumor
-0.1
376
Normal
-0.1
327
Tumor
-0.1
312
Normal
-0.1
744
Normal
-0.1
648
Normal
-0.1
823
Tumor
-0.1
222
Normal
-0.1
564
Normal
-0.1
196
Normal
-0.1
387
Tumor
-0.1
615
Tumor
-0.1
1013
Tumor
-0.1
392
Normal
-0.1
664
Normal
-0.1
493
Tumor
-0.1
666
Normal
-0.1
697
Tumor
-0.1
534
Normal
-0.1
738
Normal
-0.1
647
Tumor
-0.1
568
Normal
-0.1
232
Normal
-0.1
786
Normal
-0.1
574
Normal
-0.1
978
Normal
-0.1
981
Tumor
-0.1
742
Normal
-0.1
218
Normal
-0.1
415
Tumor
-0.1
938
Normal
-0.1
212
Normal
-0.1
755
Tumor
-0.1
524
Normal
-0.1
723
Tumor
-0.1
466
Normal
-0.2
857
Tumor
-0.2
617
Tumor
-0.2
926
Normal
-0.2
964
Normal
-0.2
481
Tumor
-0.2
1032
Normal
-0.2
1014
Normal
-0.2
925
Tumor
-0.2
672
Normal
-0.2
328
Normal
-0.2
912
Normal
-0.2
824
Normal
-0.2
142
Normal
-0.2
462
Normal
-0.2
966
Normal
-0.2
954
Normal
-0.2
231
Tumor
-0.2
356
Normal
-0.2
537
Tumor
-0.2
728
Normal
-0.2
636
Normal
-0.2
858
Normal
-0.2
911
Tumor
-0.2
284
Normal
-0.2
968
Normal
-0.2
516
Normal
-0.2
448
Normal
-0.2
412
Normal
-0.2
915
Tumor
-0.2
976
Normal
-0.2
525
Tumor
-0.2
756
Normal
-0.2
984
Normal
-0.2
492
Normal
-0.2
514
Normal
-0.2
313
Tumor
-0.2
686
Normal
-0.2
944
Normal
-0.2
1044
Normal
-0.2
818
Normal
-0.2
538
Normal
-0.2
1043
Tumor
-0.2
546
Normal
-0.2
572
Normal
-0.2
746
Normal
-0.2
958
Normal
-0.2
491
Tumor
-0.2
642
Normal
-0.2
618
Normal
-0.2
528
Normal
-0.2
922
Normal
-0.2
1028
Normal
-0.2
864
Normal
-0.2
558
Normal
-0.2
716
Normal
-0.2
1046
Normal
-0.2
918
Normal
-0.2
924
Normal
-0.2
957
Tumor
-0.2
228
Normal
-0.2
866
Normal
-0.3
862
Normal
-0.3
472
Normal
-0.3
778
Normal
-0.3
628
Normal
-0.3
816
Normal
-0.3
868
Normal
-0.3
1016
Normal
-0.3
498
Normal
-0.3
416
Normal
-0.3
884
Normal
-0.3
1022
Normal
-0.3
224
Normal
-0.3
494
Normal
-0.3
553
Tumor
-0.3
698
Normal
-0.3
882
Normal
-0.3
286
Normal
-0.3
518
Normal
-0.3
526
Normal
-0.3
364
Normal
-0.3
533
Tumor
-0.3
878
Normal
-0.3
488
Normal
-0.3
852
Normal
-0.3
1042
Normal
-0.3
914
Normal
-0.3
874
Normal
-0.3
616
Normal
-0.3
956
Normal
-0.3
554
Normal
-0.3
1026
Normal
-0.3
474
Normal
-0.3
952
Normal
-0.3
714
Normal
-0.3
982
Normal
-0.3
696
Normal
-0.3
482
Normal
-0.4
484
Normal
-0.4
722
Normal
-0.4
477
Tumor
-0.4
257
Tumor
-0.4
745
Tumor
-0.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
