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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HAX1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
107.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
432.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
311.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
288.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
273.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
264.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
243.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
240.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
237.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
236.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
233.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
231.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
225.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
212.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
212.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
211.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
209.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
208.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
201.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
198.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
198.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
195.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
194.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
194.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
193.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
188.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
188.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
184.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
183.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
178.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
177.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
174.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
172.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
170.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
168.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
167.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
167.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
165.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
164.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
163.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
162.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
156.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
156.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
156.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
156.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
154.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
153.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
153.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
148.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
148.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
148.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
147.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
145.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
145.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
144.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
144.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
143.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
142.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
140.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
140.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
140.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
140.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
139.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
138.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
138.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
138.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
137.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
137.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
137.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
136.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
135.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
135.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
134.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
134.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
134.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
134.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
133.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
133.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
133.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
133.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
133.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
131.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
130.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
130.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
130.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
129.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
129.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
128.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
128.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
128.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
128.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
128.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
127.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
127.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
126.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
126.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
125.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
125.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
124.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
124.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
123.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
123.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
122.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
122.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
122.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
122.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
122.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
122.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
122.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
122.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
122.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
121.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
121.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
121.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
120.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
120.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
120.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
119.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
119.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
118.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
117.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
117.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
117.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
117.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
117.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
116.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
116.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
116.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
116.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
115.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
115.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
115.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
114.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
114.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
114.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
114.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
113.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
113.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
113.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
113.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
113.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
112.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
111.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
110.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
110.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
109.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
109.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
108.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
108.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
108.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
107.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
107.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
106.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
106.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
106.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
105.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
105.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
105.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
104.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
104.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
104.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
104.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
104.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
104.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
103.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
103.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
103.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
103.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
102.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
101.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
100.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
100.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
99.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
99.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
99.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
99.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
99.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
98.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
98.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
97.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
97.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
96.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
96.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
96.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
95.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
95.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
95.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
95.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
95.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
95.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
95.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
95.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
95.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
94.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
94.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
94.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
94.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
94.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
94.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
94.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
94.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
93.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
93.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
93.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
93.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
93.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
93.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
93.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
92.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
92.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
92.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
92.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
91.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
91.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
91.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
91.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
91.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
91.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
90.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
90.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
90.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
90.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
90.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
90.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
90.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
89.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
89.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
89.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
89.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
89.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
89.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
89.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
88.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
88.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
88.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
87.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
87.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
87.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
87.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
86.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
86.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
86.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
86.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
86.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
85.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
85.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
84.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
83.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
82.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
82.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
82.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
82.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
81.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
81.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
81.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
81.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
81.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
81.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
81.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
80.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
80.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
80.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
80.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
79.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
78.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
77.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
77.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
76.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
76.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
76.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
75.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
75.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
75.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
75.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
75.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
73.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
73.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
73.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
72.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
72.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
72.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
71.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
70.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
70.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
69.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
69.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
69.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
69.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
68.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
68.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
68.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
68.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
68.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
67.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
67.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
67.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
67.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
65.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
65.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
64.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
64.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
64.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
64.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
64.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
64.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
64.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
63.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
63.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
63.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
62.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
62.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
62.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
62.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
61.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
61.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
60.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
60.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
60.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
58.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
58.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
58.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
58.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
57.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
57.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
56.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
56.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
56.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
56.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
55.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
55.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
54.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
53.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
53.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
53.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
53.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
53.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
51.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
51.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
51.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
50.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
49.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
49.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
49.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
47.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
47.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
47.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
46.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
45.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
44.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
44.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
43.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
43.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
42.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
42.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
37.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
37.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
36.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
35.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
33.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
27.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
27.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
16.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HAX1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
88.1
Number of samples
231
Samples
Sample
Description
TPM
DO45119
0 years, male, NA, stage:3, dead, 510 days
216.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
207.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
203.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
202.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
201.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
193.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
190.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
188.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
182.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
181.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
169.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
167.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
166.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
166.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
159.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
158.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
155.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
150.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
146.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
145.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
143.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
143.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
142.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
140.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
139.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
137.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
136.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
136.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
133.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
133.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
133.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
130.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
129.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
126.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
125.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
122.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
121.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
116.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
116.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
116.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
115.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
113.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
113.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
112.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
112.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
111.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
110.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
109.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
109.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
109.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
108.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
108.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
108.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
107.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
107.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
106.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
106.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
103.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
103.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
103.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
102.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
102.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
102.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
101.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
100.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
100.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
98.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
98.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
98.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
97.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
96.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
96.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
95.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
95.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
94.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
93.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
93.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
92.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
91.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
91.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
91.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
90.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
90.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
90.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
90.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
90.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
90.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
90.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
90.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
88.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
88.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
87.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
87.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
87.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
87.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
86.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
86.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
85.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
85.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
85.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
84.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
84.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
84.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
83.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
82.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
82.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
82.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
81.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
81.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
81.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
80.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
80.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
80.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
79.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
78.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
78.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
78.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
78.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
77.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
77.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
76.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
76.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
76.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
76.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
76.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
76.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
75.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
75.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
75.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
75.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
75.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
74.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
74.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
74.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
74.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
73.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
73.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
73.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
73.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
73.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
72.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
72.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
71.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
71.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
71.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
71.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
71.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
71.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
71.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
70.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
70.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
70.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
69.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
68.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
68.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
67.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
67.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
67.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
67.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
66.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
66.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
66.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
65.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
64.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
64.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
64.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
64.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
64.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
64.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
63.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
63.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
62.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
62.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
62.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
62.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
62.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
62.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
61.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
61.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
60.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
60.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
60.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
60.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
59.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
58.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
58.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
57.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
57.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
56.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
56.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
56.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
56.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
56.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
55.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
55.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
55.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
55.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
54.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
54.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
52.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
51.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
51.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
51.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
51.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
50.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
50.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
49.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
49.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
49.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
47.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
47.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
46.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
45.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
45.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
45.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
44.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
42.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
42.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
42.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
41.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
41.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
41.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
40.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
39.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
38.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
38.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
38.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
37.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
36.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
34.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
30.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
357
Tumor
1.1
1013
Tumor
0.9
473
Tumor
0.9
665
Tumor
0.8
513
Tumor
0.8
537
Tumor
0.8
465
Tumor
0.8
411
Tumor
0.8
925
Tumor
0.8
435
Tumor
0.7
171
Tumor
0.7
1025
Tumor
0.7
361
Tumor
0.7
487
Tumor
0.7
957
Tumor
0.7
383
Tumor
0.7
227
Tumor
0.7
727
Tumor
0.6
231
Tumor
0.6
923
Tumor
0.6
571
Tumor
0.6
387
Tumor
0.6
615
Tumor
0.6
915
Tumor
0.6
477
Tumor
0.5
745
Tumor
0.5
427
Tumor
0.5
313
Tumor
0.5
161
Tumor
0.5
627
Tumor
0.5
857
Tumor
0.5
191
Tumor
0.5
483
Tumor
0.5
351
Tumor
0.5
123
Tumor
0.5
1027
Tumor
0.5
785
Tumor
0.4
314
Normal
0.4
523
Tumor
0.4
431
Tumor
0.4
553
Tumor
0.4
443
Tumor
0.4
1021
Tumor
0.4
353
Tumor
0.4
497
Tumor
0.4
557
Tumor
0.4
525
Tumor
0.4
953
Tumor
0.4
425
Tumor
0.4
741
Tumor
0.4
1041
Tumor
0.4
533
Tumor
0.4
685
Tumor
0.3
663
Tumor
0.3
865
Tumor
0.3
481
Tumor
0.3
515
Tumor
0.3
426
Normal
0.3
393
Tumor
0.3
451
Tumor
0.3
863
Tumor
0.3
471
Tumor
0.3
127
Tumor
0.3
567
Tumor
0.3
724
Normal
0.3
147
Tumor
0.3
445
Tumor
0.3
365
Tumor
0.3
261
Tumor
0.3
412
Normal
0.3
1043
Tumor
0.3
172
Normal
0.3
648
Normal
0.3
777
Tumor
0.3
355
Tumor
0.2
148
Normal
0.2
714
Normal
0.2
491
Tumor
0.2
737
Tumor
0.2
695
Tumor
0.2
258
Normal
0.2
1031
Tumor
0.2
883
Tumor
0.2
534
Normal
0.2
713
Tumor
0.2
1032
Normal
0.2
882
Normal
0.2
341
Tumor
0.2
965
Tumor
0.2
878
Normal
0.2
977
Tumor
0.2
257
Tumor
0.2
452
Normal
0.2
1014
Normal
0.2
356
Normal
0.2
662
Normal
0.2
866
Normal
0.2
964
Normal
0.2
545
Tumor
0.2
563
Tumor
0.1
861
Tumor
0.1
267
Tumor
0.1
271
Tumor
0.1
873
Tumor
0.1
187
Tumor
0.1
1026
Normal
0.1
462
Normal
0.1
944
Normal
0.1
1022
Normal
0.1
145
Tumor
0.1
913
Tumor
0.1
463
Tumor
0.1
391
Tumor
0.1
527
Tumor
0.1
186
Normal
0.1
635
Tumor
0.1
298
Normal
0.1
911
Tumor
0.1
162
Normal
0.1
647
Tumor
0.1
572
Normal
0.1
568
Normal
0.1
535
Tumor
0.1
517
Tumor
0.1
446
Normal
0.1
743
Tumor
0.1
554
Normal
0.1
468
Normal
0.1
564
Normal
0.1
368
Normal
0.1
363
Tumor
0.1
1015
Tumor
0.1
666
Normal
0.1
482
Normal
0.1
984
Normal
0.1
912
Normal
0.1
746
Normal
0.1
738
Normal
0.1
956
Normal
0.1
217
Tumor
0.1
488
Normal
0.1
213
Tumor
0.1
867
Tumor
0.1
1042
Normal
0.1
967
Tumor
0.1
618
Normal
0.1
331
Tumor
0.1
755
Tumor
0.1
744
Normal
0.1
278
Normal
0.0
466
Normal
0.0
221
Tumor
0.0
232
Normal
0.0
922
Normal
0.0
424
Normal
0.0
938
Normal
0.0
494
Normal
0.0
858
Normal
0.0
421
Tumor
0.0
414
Normal
0.0
185
Tumor
0.0
436
Normal
0.0
664
Normal
0.0
864
Normal
0.0
937
Tumor
0.0
877
Tumor
0.0
367
Tumor
0.0
851
Tumor
0.0
824
Normal
0.0
358
Normal
0.0
955
Tumor
0.0
1028
Normal
0.0
464
Normal
0.0
641
Tumor
0.0
963
Tumor
0.0
672
Normal
0.0
416
Normal
0.0
742
Normal
0.0
428
Normal
0.0
388
Normal
0.0
423
Tumor
0.0
722
Normal
0.0
286
Normal
0.0
328
Normal
0.0
214
Normal
0.0
223
Tumor
0.0
921
Tumor
0.0
526
Normal
0.0
818
Normal
0.0
697
Tumor
0.0
546
Normal
0.0
954
Normal
0.0
433
Tumor
0.0
728
Normal
0.0
958
Normal
0.0
514
Normal
0.0
364
Normal
0.0
196
Normal
0.0
138
Normal
0.0
696
Normal
0.0
285
Tumor
0.0
142
Normal
0.0
277
Tumor
0.0
228
Normal
0.0
636
Normal
0.0
472
Normal
0.0
474
Normal
0.0
868
Normal
0.0
141
Tumor
0.0
951
Tumor
-0.1
968
Normal
-0.1
342
Normal
-0.1
884
Normal
-0.1
528
Normal
-0.1
823
Tumor
-0.1
362
Normal
-0.1
756
Normal
-0.1
344
Normal
-0.1
484
Normal
-0.1
642
Normal
-0.1
268
Normal
-0.1
224
Normal
-0.1
272
Normal
-0.1
195
Tumor
-0.1
721
Tumor
-0.1
616
Normal
-0.1
518
Normal
-0.1
918
Normal
-0.1
966
Normal
-0.1
516
Normal
-0.1
111
Normal
-0.1
132
Normal
-0.1
558
Normal
-0.1
723
Tumor
-0.1
538
Normal
-0.1
113
Tumor
-0.1
394
Normal
-0.1
136
Normal
-0.1
461
Tumor
-0.1
137
Tumor
-0.1
456
Normal
-0.1
135
Tumor
-0.1
976
Normal
-0.1
218
Normal
-0.1
862
Normal
-0.1
573
Tumor
-0.1
574
Normal
-0.1
376
Normal
-0.1
715
Tumor
-0.1
131
Tumor
-0.1
467
Tumor
-0.1
146
Normal
-0.1
686
Normal
-0.1
926
Normal
-0.1
125
Tumor
-0.1
284
Normal
-0.2
415
Tumor
-0.2
982
Normal
-0.2
874
Normal
-0.2
493
Tumor
-0.2
396
Normal
-0.2
498
Normal
-0.2
444
Normal
-0.2
188
Normal
-0.2
628
Normal
-0.2
422
Normal
-0.2
413
Tumor
-0.2
312
Normal
-0.2
385
Tumor
-0.2
716
Normal
-0.2
1016
Normal
-0.2
352
Normal
-0.2
386
Normal
-0.2
332
Normal
-0.2
455
Tumor
-0.2
375
Tumor
-0.2
448
Normal
-0.2
262
Normal
-0.2
983
Tumor
-0.2
354
Normal
-0.2
952
Normal
-0.2
492
Normal
-0.2
392
Normal
-0.2
816
Normal
-0.2
1046
Normal
-0.2
617
Tumor
-0.2
778
Normal
-0.2
222
Normal
-0.2
395
Tumor
-0.2
671
Tumor
-0.2
924
Normal
-0.2
661
Tumor
-0.2
786
Normal
-0.2
981
Tumor
-0.2
366
Normal
-0.2
327
Tumor
-0.2
524
Normal
-0.2
384
Normal
-0.2
434
Normal
-0.2
881
Tumor
-0.2
432
Normal
-0.2
297
Tumor
-0.3
1045
Tumor
-0.3
916
Normal
-0.3
943
Tumor
-0.3
698
Normal
-0.3
128
Normal
-0.3
813
Tumor
-0.3
112
Tumor
-0.3
1044
Normal
-0.3
478
Normal
-0.3
978
Normal
-0.3
124
Normal
-0.3
975
Tumor
-0.3
283
Tumor
-0.3
852
Normal
-0.3
212
Normal
-0.3
536
Normal
-0.3
114
Normal
-0.4
126
Normal
-0.4
815
Tumor
-0.4
914
Normal
-0.4
447
Tumor
-0.5
814
Normal
-0.5
192
Normal
-0.5
211
Tumor
-0.6
917
Tumor
-0.7
817
Tumor
-0.7
343
Tumor
-0.8
311
Tumor
-0.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
