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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UBAP2L is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
38.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
165.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
122.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
117.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
115.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
114.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
112.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
111.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
110.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
108.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
106.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
101.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
99.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
96.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
94.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
94.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
93.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
92.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
91.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
91.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
90.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
89.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
87.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
86.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
86.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
81.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
81.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
79.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
76.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
76.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
75.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
74.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
73.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
73.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
72.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
72.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
72.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
72.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
71.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
71.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
70.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
69.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
67.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
67.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
65.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
65.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
64.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
64.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
64.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
62.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
62.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
61.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
61.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
60.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
59.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
59.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
59.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
58.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
58.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
58.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
57.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
57.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
57.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
57.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
57.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
56.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
56.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
55.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
55.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
55.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
54.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
54.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
54.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
54.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
53.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
53.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
53.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
53.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
50.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
50.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
50.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
50.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
49.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
49.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
49.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
48.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
48.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
48.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
48.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
48.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
47.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
47.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
47.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
46.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
46.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
46.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
46.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
46.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
45.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
45.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
45.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
45.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
45.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
45.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
44.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
44.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
44.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
43.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
43.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
43.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
42.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
42.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
42.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
42.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
42.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
42.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
42.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
41.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
41.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
41.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
41.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
41.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
41.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
41.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
41.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
41.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
41.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
40.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
40.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
40.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
40.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
40.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
40.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
40.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
39.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
39.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
39.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
39.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
39.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
38.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
38.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
38.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
38.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
38.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
37.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
37.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
37.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
37.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
37.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
37.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
37.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
37.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
37.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
37.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
36.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
36.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
36.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
36.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
36.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
36.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
36.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
36.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
35.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
35.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
35.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
35.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
35.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
35.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
35.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
35.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
35.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
34.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
34.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
34.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
34.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
34.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
34.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
34.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
34.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
34.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
34.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
33.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
33.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
33.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
33.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
32.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
32.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
32.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
32.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
32.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
32.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
32.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
31.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
31.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
31.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
31.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
31.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
31.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
31.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
30.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
30.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
30.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
30.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
30.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
30.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
30.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
29.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
29.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
29.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
29.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
29.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
29.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
28.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
28.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
28.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
28.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
28.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
28.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
28.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
28.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
28.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
28.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
27.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
27.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
27.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
27.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
27.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
27.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
27.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
27.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
27.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
27.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
26.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
26.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
26.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
26.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
26.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
26.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
26.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
26.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
26.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
26.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
26.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
26.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
25.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
25.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
25.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
25.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
25.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
25.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
25.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
25.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
25.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
25.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
24.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
24.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
24.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
24.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
23.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
23.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
23.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
23.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
23.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
23.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
23.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
22.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
22.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
22.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
22.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
22.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
22.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
22.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
22.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
22.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
22.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
22.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
22.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
22.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
21.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
21.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
20.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
20.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
20.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
20.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
20.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
20.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
20.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
19.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
19.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
19.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
19.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
19.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
19.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
18.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
18.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
18.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
18.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
18.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
18.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
17.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
17.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
17.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
17.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
17.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
17.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
17.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
17.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
16.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
16.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
16.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
16.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
16.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
15.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
15.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
15.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
15.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
15.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
15.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
14.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
14.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
14.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
14.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
14.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
14.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
13.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
13.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
13.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
13.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
12.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
12.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
12.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
12.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
12.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
11.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
11.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
11.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
11.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
11.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
11.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
10.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
10.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
10.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
9.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
8.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UBAP2L is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
34.1
Number of samples
231
Samples
Sample
Description
TPM
DO23521
0 years, male, NA, stage:3, alive, 1110 days
161.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
109.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
109.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
85.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
82.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
81.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
73.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
71.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
70.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
69.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
67.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
66.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
66.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
65.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
64.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
62.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
61.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
60.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
59.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
59.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
58.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
58.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
58.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
57.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
55.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
54.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
53.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
53.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
53.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
52.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
51.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
51.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
51.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
50.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
50.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
50.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
50.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
50.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
50.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
49.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
49.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
49.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
48.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
47.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
47.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
46.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
46.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
45.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
44.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
44.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
44.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
43.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
43.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
43.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
43.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
42.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
42.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
42.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
41.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
41.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
41.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
41.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
41.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
41.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
39.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
39.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
39.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
39.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
39.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
39.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
39.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
39.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
39.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
39.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
39.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
38.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
38.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
38.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
38.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
38.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
38.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
37.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
37.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
37.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
37.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
35.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
35.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
35.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
35.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
35.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
35.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
35.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
34.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
34.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
34.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
34.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
34.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
34.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
33.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
33.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
33.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
33.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
33.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
33.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
32.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
32.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
31.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
31.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
31.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
30.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
30.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
30.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
30.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
30.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
30.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
30.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
30.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
29.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
29.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
29.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
29.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
29.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
29.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
29.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
29.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
29.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
29.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
29.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
29.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
29.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
29.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
29.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
28.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
28.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
28.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
28.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
28.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
28.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
27.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
26.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
26.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
26.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
26.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
25.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
25.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
24.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
24.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
24.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
24.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
24.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
24.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
23.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
23.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
23.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
23.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
23.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
22.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
22.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
22.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
21.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
21.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
21.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
21.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
21.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
21.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
21.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
20.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
20.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
20.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
20.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
20.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
20.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
20.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
20.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
20.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
20.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
19.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
19.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
19.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
19.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
19.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
19.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
19.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
19.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
19.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
19.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
18.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
18.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
18.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
18.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
18.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
18.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
17.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
17.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
17.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
17.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
17.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
17.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
17.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
17.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
16.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
16.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
16.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
16.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
16.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
16.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
16.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
15.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
15.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
15.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
14.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
14.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
14.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
14.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
13.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
13.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
13.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
13.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
13.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
13.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
13.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
11.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
957
Tumor
1.2
965
Tumor
1.1
743
Tumor
1.1
427
Tumor
1.1
1013
Tumor
1.1
161
Tumor
1.0
977
Tumor
1.0
123
Tumor
1.0
525
Tumor
0.9
1025
Tumor
0.9
777
Tumor
0.9
567
Tumor
0.9
533
Tumor
0.9
865
Tumor
0.8
487
Tumor
0.8
915
Tumor
0.8
715
Tumor
0.8
383
Tumor
0.8
1021
Tumor
0.8
473
Tumor
0.8
411
Tumor
0.8
553
Tumor
0.7
211
Tumor
0.7
573
Tumor
0.7
663
Tumor
0.7
1041
Tumor
0.7
497
Tumor
0.7
131
Tumor
0.7
724
Normal
0.7
851
Tumor
0.7
953
Tumor
0.7
817
Tumor
0.6
523
Tumor
0.6
877
Tumor
0.6
545
Tumor
0.6
171
Tumor
0.6
921
Tumor
0.6
647
Tumor
0.6
983
Tumor
0.6
517
Tumor
0.6
951
Tumor
0.6
883
Tumor
0.6
331
Tumor
0.6
425
Tumor
0.6
285
Tumor
0.5
351
Tumor
0.5
861
Tumor
0.5
355
Tumor
0.5
537
Tumor
0.5
823
Tumor
0.5
327
Tumor
0.5
943
Tumor
0.5
1043
Tumor
0.5
231
Tumor
0.5
557
Tumor
0.5
493
Tumor
0.4
881
Tumor
0.4
1031
Tumor
0.4
641
Tumor
0.4
665
Tumor
0.4
923
Tumor
0.4
431
Tumor
0.4
461
Tumor
0.4
221
Tumor
0.4
451
Tumor
0.4
283
Tumor
0.4
447
Tumor
0.4
375
Tumor
0.4
975
Tumor
0.4
1027
Tumor
0.4
191
Tumor
0.4
867
Tumor
0.4
393
Tumor
0.4
463
Tumor
0.3
911
Tumor
0.3
361
Tumor
0.3
483
Tumor
0.3
913
Tumor
0.3
135
Tumor
0.3
527
Tumor
0.3
697
Tumor
0.3
471
Tumor
0.3
1015
Tumor
0.3
737
Tumor
0.3
267
Tumor
0.3
515
Tumor
0.3
367
Tumor
0.2
227
Tumor
0.2
385
Tumor
0.2
415
Tumor
0.2
814
Normal
0.2
617
Tumor
0.2
535
Tumor
0.2
491
Tumor
0.2
863
Tumor
0.2
313
Tumor
0.2
713
Tumor
0.2
481
Tumor
0.2
395
Tumor
0.2
741
Tumor
0.2
671
Tumor
0.2
785
Tumor
0.2
477
Tumor
0.1
635
Tumor
0.1
727
Tumor
0.1
297
Tumor
0.1
937
Tumor
0.1
443
Tumor
0.1
112
Tumor
0.1
261
Tumor
0.1
857
Tumor
0.1
955
Tumor
0.1
277
Tumor
0.1
125
Tumor
0.1
925
Tumor
0.1
311
Tumor
0.1
187
Tumor
0.1
813
Tumor
0.1
981
Tumor
0.1
721
Tumor
0.1
467
Tumor
0.1
627
Tumor
0.1
1028
Normal
0.1
513
Tumor
0.0
685
Tumor
0.0
695
Tumor
0.0
868
Normal
0.0
435
Tumor
0.0
563
Tumor
0.0
363
Tumor
0.0
745
Tumor
0.0
498
Normal
0.0
918
Normal
0.0
714
Normal
0.0
967
Tumor
0.0
387
Tumor
0.0
536
Normal
0.0
661
Tumor
0.0
257
Tumor
0.0
518
Normal
0.0
786
Normal
0.0
271
Tumor
0.0
213
Tumor
0.0
884
Normal
0.0
912
Normal
0.0
615
Tumor
0.0
554
Normal
0.0
484
Normal
0.0
864
Normal
0.0
873
Tumor
0.0
755
Tumor
0.0
914
Normal
-0.1
391
Tumor
-0.1
433
Tumor
-0.1
445
Tumor
-0.1
916
Normal
-0.1
696
Normal
-0.1
954
Normal
-0.1
365
Tumor
-0.1
944
Normal
-0.1
642
Normal
-0.1
284
Normal
-0.1
286
Normal
-0.1
528
Normal
-0.1
968
Normal
-0.1
852
Normal
-0.1
113
Tumor
-0.1
524
Normal
-0.1
628
Normal
-0.1
1045
Tumor
-0.1
1016
Normal
-0.1
636
Normal
-0.1
958
Normal
-0.1
137
Tumor
-0.1
195
Tumor
-0.1
147
Tumor
-0.1
1026
Normal
-0.1
862
Normal
-0.1
922
Normal
-0.1
343
Tumor
-0.1
1022
Normal
-0.1
978
Normal
-0.1
465
Tumor
-0.1
984
Normal
-0.1
963
Tumor
-0.1
217
Tumor
-0.1
778
Normal
-0.1
866
Normal
-0.1
421
Tumor
-0.1
858
Normal
-0.1
882
Normal
-0.1
492
Normal
-0.1
917
Tumor
-0.1
815
Tumor
-0.1
966
Normal
-0.1
746
Normal
-0.1
878
Normal
-0.1
413
Tumor
-0.1
416
Normal
-0.1
874
Normal
-0.1
1042
Normal
-0.2
141
Tumor
-0.2
952
Normal
-0.2
127
Tumor
-0.2
728
Normal
-0.2
558
Normal
-0.2
572
Normal
-0.2
926
Normal
-0.2
824
Normal
-0.2
224
Normal
-0.2
568
Normal
-0.2
357
Tumor
-0.2
924
Normal
-0.2
455
Tumor
-0.2
494
Normal
-0.2
618
Normal
-0.2
353
Tumor
-0.2
538
Normal
-0.2
223
Tumor
-0.2
716
Normal
-0.2
423
Tumor
-0.2
145
Tumor
-0.2
534
Normal
-0.2
756
Normal
-0.2
384
Normal
-0.2
742
Normal
-0.2
526
Normal
-0.2
546
Normal
-0.2
723
Tumor
-0.2
664
Normal
-0.2
571
Tumor
-0.2
364
Normal
-0.2
982
Normal
-0.2
516
Normal
-0.2
232
Normal
-0.2
574
Normal
-0.2
228
Normal
-0.3
448
Normal
-0.3
1044
Normal
-0.3
412
Normal
-0.3
616
Normal
-0.3
938
Normal
-0.3
478
Normal
-0.3
362
Normal
-0.3
268
Normal
-0.3
672
Normal
-0.3
816
Normal
-0.3
1046
Normal
-0.3
1014
Normal
-0.3
564
Normal
-0.3
686
Normal
-0.3
1032
Normal
-0.3
666
Normal
-0.3
964
Normal
-0.3
698
Normal
-0.3
488
Normal
-0.3
648
Normal
-0.3
514
Normal
-0.3
368
Normal
-0.3
474
Normal
-0.3
662
Normal
-0.3
976
Normal
-0.3
744
Normal
-0.3
212
Normal
-0.3
462
Normal
-0.3
722
Normal
-0.3
428
Normal
-0.3
426
Normal
-0.3
472
Normal
-0.3
396
Normal
-0.3
392
Normal
-0.3
192
Normal
-0.3
366
Normal
-0.3
482
Normal
-0.3
444
Normal
-0.3
818
Normal
-0.3
956
Normal
-0.4
124
Normal
-0.4
298
Normal
-0.4
341
Tumor
-0.4
312
Normal
-0.4
414
Normal
-0.4
738
Normal
-0.4
328
Normal
-0.4
262
Normal
-0.4
214
Normal
-0.4
222
Normal
-0.4
386
Normal
-0.4
356
Normal
-0.4
422
Normal
-0.4
388
Normal
-0.4
376
Normal
-0.4
424
Normal
-0.4
136
Normal
-0.4
446
Normal
-0.5
132
Normal
-0.5
126
Normal
-0.5
434
Normal
-0.5
111
Normal
-0.5
468
Normal
-0.5
188
Normal
-0.5
258
Normal
-0.5
142
Normal
-0.5
466
Normal
-0.5
278
Normal
-0.5
148
Normal
-0.5
218
Normal
-0.5
138
Normal
-0.5
114
Normal
-0.5
272
Normal
-0.5
456
Normal
-0.5
464
Normal
-0.5
196
Normal
-0.5
354
Normal
-0.6
452
Normal
-0.6
394
Normal
-0.6
352
Normal
-0.6
436
Normal
-0.6
162
Normal
-0.6
146
Normal
-0.6
185
Tumor
-0.6
332
Normal
-0.6
128
Normal
-0.6
344
Normal
-0.7
186
Normal
-0.7
172
Normal
-0.7
432
Normal
-0.7
358
Normal
-0.8
314
Normal
-0.8
342
Normal
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
