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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
S100A7 is not prognostic in Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
861.2
Number of samples
283
Samples
Sample
Description
TPM
TCGA-MU-A8JM-01A
0 years, female, white, stage:Stage IB, alive, 607 days
10205.7
TCGA-EK-A2RJ-01A
0 years, female, white, stage:Stage IB, alive, 53 days
10054.3
TCGA-C5-A1M7-01A
0 years, female, white, stage:Stage IB, alive, 1409 days
9254.6
TCGA-UC-A7PG-01A
0 years, female, white, stage:Stage IIIB, dead, 370 days
9117.7
TCGA-C5-A1BM-01A
0 years, female, black or african american, stage:Stage IB, dead, 2520 days
8322.4
TCGA-MA-AA3X-01A
0 years, female, black or african american, stage:Stage IIIB, alive, 617 days
7470.1
TCGA-FU-A5XV-01A
0 years, female, white, stage:Stage IIIB, alive, 321 days
7381.9
TCGA-C5-A7CH-01A
0 years, female, white, stage:Stage IIB, alive, 4694 days
7268.3
TCGA-VS-AA62-01A
0 years, female, white, stage:Stage IIB, dead, 469 days
7027.9
TCGA-VS-A9UC-01A
0 years, female, stage:Stage IIB, alive, 825 days
6864.5
TCGA-LP-A4AU-01A
0 years, female, asian, stage:Stage IIIB, alive, 343 days
6850.9
TCGA-VS-A8QF-01A
0 years, female, white, stage:Stage IIB, alive, 1800 days
6719.4
TCGA-EK-A2PG-01A
0 years, female, black or african american, stage:'--, alive, 46 days
6021.3
TCGA-C5-A901-01A
0 years, female, white, stage:'--, alive, 518 days
5928.1
TCGA-VS-A9U7-01A
0 years, female, white, stage:Stage IB, alive, 1472 days
5771.0
TCGA-VS-A958-01A
0 years, female, white, stage:Stage IIB, alive, 1525 days
5252.6
TCGA-C5-A7UE-01A
0 years, female, white, stage:Stage IB, alive, 4738 days
5028.4
TCGA-VS-A8EG-01A
0 years, female, stage:Stage IB, alive, 1386 days
4890.1
TCGA-EK-A2H0-01A
0 years, female, white, stage:Stage IIB, alive, 1847 days
4381.1
TCGA-DS-A0VN-01A
0 years, female, white, stage:Stage IB, alive, 3609 days
4266.8
TCGA-VS-A8Q8-01A
0 years, female, white, stage:Stage IB, dead, 978 days
4068.6
TCGA-MA-AA43-01A
0 years, female, white, stage:Stage IIIB, alive, 346 days
4031.6
TCGA-C5-A1MQ-01A
0 years, female, white, stage:Stage IIA, alive, 1031 days
3849.0
TCGA-VS-A9U6-01A
0 years, female, white, stage:Stage IVB, alive, 1320 days
3370.9
TCGA-EK-A2RE-01A
0 years, female, white, stage:Stage IIA, alive, 57 days
3359.4
TCGA-VS-A950-01A
0 years, female, stage:Stage IIIA, alive, 1221 days
2977.1
TCGA-VS-A9V2-01A
0 years, female, white, stage:Stage IB, alive, 555 days
2879.5
TCGA-EA-A50E-01A
0 years, female, asian, stage:Stage IVA, dead, 227 days
2650.3
TCGA-MA-AA3Y-01A
0 years, female, white, stage:Stage IB, alive, 542 days
2506.7
TCGA-Q1-A6DT-01A
0 years, female, white, stage:Stage I, dead, 275 days
2175.0
TCGA-VS-A9UI-01A
0 years, female, white, stage:Stage IIB, dead, 1372 days
2140.3
TCGA-EK-A2PL-01A
0 years, female, white, stage:Stage IIIB, alive, 13 days
2108.8
TCGA-EA-A5ZD-01A
0 years, female, asian, stage:Stage IB, alive, 830 days
2041.3
TCGA-C5-A8YQ-01A
0 years, female, white, stage:Stage IB, dead, 715 days
1984.4
TCGA-EA-A97N-01A
0 years, female, white, stage:Stage IB, alive, 11 days
1960.4
TCGA-C5-A1M8-01A
0 years, female, white, stage:Stage IB, alive, 919 days
1887.8
TCGA-EX-A3L1-01A
0 years, female, white, stage:Stage IIA, alive, 463 days
1884.3
TCGA-C5-A7UC-01A
0 years, female, white, stage:Stage IB, dead, 523 days
1771.1
TCGA-DS-A7WI-01A
0 years, female, white, stage:Stage IIA, dead, 252 days
1637.0
TCGA-ZJ-AAX4-01A
0 years, female, white, stage:Stage II, alive, 21 days
1631.6
TCGA-FU-A3TQ-01A
0 years, female, white, stage:Stage IIIB, alive, 795 days
1596.0
TCGA-VS-A9UY-01A
0 years, female, stage:Stage IVB, dead, 555 days
1557.5
TCGA-EA-A3QE-01A
0 years, female, white, stage:Stage IB, alive, 761 days
1553.0
TCGA-C5-A7UI-01A
0 years, female, black or african american, stage:Stage IB, dead, 2888 days
1536.7
TCGA-EA-A3HT-01A
0 years, female, white, stage:Stage IB, alive, 954 days
1529.0
TCGA-FU-A3NI-01A
0 years, female, white, stage:Stage IB, dead, 638 days
1502.1
TCGA-R2-A69V-01A
0 years, female, white, stage:Stage IB, alive, 596 days
1391.6
TCGA-ZJ-A8QQ-01A
0 years, female, white, stage:Stage IIB, alive, 2056 days
1370.1
TCGA-EA-A3HS-01A
0 years, female, white, stage:Stage IB, alive, 959 days
1349.8
TCGA-C5-A7XC-01A
0 years, female, white, stage:Stage IB, alive, 1551 days
1319.5
TCGA-VS-A8EL-01A
0 years, female, black or african american, stage:Stage IIB, alive, 1992 days
1308.4
TCGA-BI-A0VS-01A
0 years, female, white, stage:Stage IB, alive, 1735 days
1289.7
TCGA-VS-A9UV-01A
0 years, female, stage:Stage IVA, dead, 104 days
1262.1
TCGA-EA-A43B-01A
0 years, female, white, stage:Stage IB, alive, 791 days
1208.7
TCGA-VS-A957-01A
0 years, female, white, stage:Stage IB, alive, 1688 days
1167.3
TCGA-UC-A7PD-01A
0 years, female, american indian or alaska native, stage:Stage IB, dead, 355 days
1126.6
TCGA-VS-A9UH-01A
0 years, female, black or african american, stage:Stage IVA, alive, 1427 days
1122.7
TCGA-EX-A69M-01A
0 years, female, white, stage:Stage IB, dead, 253 days
1086.4
TCGA-C5-A7UH-01A
0 years, female, white, stage:Stage IIIB, alive, 3988 days
1086.4
TCGA-JX-A5QV-01A
0 years, female, white, stage:Stage IB, alive, 636 days
1075.4
TCGA-Q1-A6DW-01A
0 years, female, white, stage:Stage I, alive, 534 days
1050.5
TCGA-EK-A2GZ-01A
0 years, female, black or african american, stage:Stage IIIB, alive, 383 days
1032.7
TCGA-VS-A9UM-01A
0 years, female, black or african american, stage:Stage IVB, dead, 829 days
1000.5
TCGA-C5-A8XH-01A
0 years, female, white, stage:Stage IB, dead, 1394 days
979.7
TCGA-VS-A9UU-01A
0 years, female, stage:Stage IIB, alive, 442 days
965.2
TCGA-VS-A94Y-01A
0 years, female, white, stage:Stage IIB, dead, 144 days
887.0
TCGA-Q1-A73S-01A
0 years, female, white, stage:Stage IB, alive, 688 days
860.3
TCGA-JW-A852-01A
0 years, female, white, stage:Stage IIB, dead, 252 days
783.2
TCGA-C5-A2LY-01A
0 years, female, white, stage:Stage IB, alive, 2383 days
753.5
TCGA-EA-A44S-01A
0 years, female, white, stage:Stage IIIB, alive, 369 days
746.6
TCGA-C5-A1ML-01A
0 years, female, white, stage:Stage IB, dead, 636 days
722.8
TCGA-JW-A5VI-01A
0 years, female, american indian or alaska native, stage:Stage IIB, alive, 747 days
639.9
TCGA-EA-A3Y4-01A
0 years, female, white, stage:Stage IB, alive, 1122 days
571.0
TCGA-DS-A1OB-01A
0 years, female, white, stage:Stage IB, dead, 861 days
559.3
TCGA-DG-A2KK-01A
0 years, female, stage:Stage IIIB, alive, 2496 days
546.5
TCGA-JW-AAVH-01A
0 years, female, white, stage:Stage IB, alive, 552 days
545.8
TCGA-GH-A9DA-01A
0 years, female, white, stage:Stage IB, alive, 540 days
537.1
TCGA-EA-A3HR-01A
0 years, female, white, stage:Stage II, alive, 940 days
525.1
TCGA-VS-A8Q9-01A
0 years, female, white, stage:Stage IB, alive, 1630 days
524.8
TCGA-EK-A2RK-01A
0 years, female, white, stage:Stage IA, alive, 13 days
460.4
TCGA-EK-A2H1-01A
0 years, female, white, stage:Stage IB, alive, 799 days
417.5
TCGA-JW-A5VK-01A
0 years, female, black or african american, stage:Stage IB, alive, 623 days
413.1
TCGA-DS-A1OC-01A
0 years, female, white, stage:Stage IB, alive, 376 days
379.2
TCGA-VS-A9UB-01A
0 years, female, stage:Stage IIB, alive, 911 days
377.2
TCGA-VS-A8QC-01A
0 years, female, white, stage:Stage IVA, dead, 350 days
364.6
TCGA-RA-A741-01A
0 years, female, white, stage:Stage IIB, alive, 444 days
359.9
TCGA-VS-A954-01A
0 years, female, stage:Stage IIIB, alive, 1714 days
359.0
TCGA-HG-A2PA-01A
0 years, female, white, stage:Stage IB, dead, 773 days
354.2
TCGA-C5-A2LZ-01A
0 years, female, white, stage:Stage IIIB, dead, 3046 days
332.6
TCGA-DS-A0VL-01A
0 years, female, white, stage:Stage IB, dead, 1692 days
324.1
TCGA-DS-A5RQ-01A
0 years, female, white, stage:Stage IB, alive, 512 days
315.1
TCGA-FU-A3YQ-01A
0 years, female, white, stage:Stage IB, alive, 861 days
298.5
TCGA-JW-A5VL-01A
0 years, female, american indian or alaska native, stage:Stage IB, alive, 474 days
286.9
TCGA-Q1-A5R2-01A
0 years, female, white, stage:'--, alive, 499 days
285.8
TCGA-VS-A8QM-01A
0 years, female, stage:Stage IVB, dead, 951 days
285.2
TCGA-FU-A23L-01A
0 years, female, white, stage:Stage IIA, alive, 725 days
283.2
TCGA-VS-A94X-01A
0 years, female, black or african american, stage:Stage IIB, dead, 506 days
251.6
TCGA-C5-A1BJ-01A
0 years, female, white, stage:Stage IIB, alive, 4385 days
250.5
TCGA-FU-A2QG-01A
0 years, female, white, stage:Stage IB, alive, 579 days
247.0
TCGA-C5-A8XK-01A
0 years, female, black or african american, stage:'--, alive, 3039 days
227.5
TCGA-EK-A2RA-01A
0 years, female, stage:Stage IIA, alive, 1246 days
218.0
TCGA-EK-A2PM-01A
0 years, female, white, stage:Stage IIB, alive, 18 days
213.2
TCGA-EK-A2IP-01A
0 years, female, white, stage:Stage IB, alive, 202 days
209.3
TCGA-C5-A1BL-01A
0 years, female, white, stage:Stage IB, alive, 5271 days
209.3
TCGA-ZJ-A8QR-01A
0 years, female, native hawaiian or other pacific islander, stage:Stage I, dead, 582 days
195.0
TCGA-EK-A3GJ-01A
0 years, female, native hawaiian or other pacific islander, stage:Stage IB, alive, 3 days
191.5
TCGA-VS-A8EH-01A
0 years, female, stage:Stage IIIB, alive, 986 days
189.4
TCGA-C5-A1M5-01A
0 years, female, white, stage:Stage IB, dead, 2052 days
185.1
TCGA-C5-A8XI-01A
0 years, female, black or african american, stage:Stage IB, alive, 254 days
176.7
TCGA-VS-A8EK-01A
0 years, female, white, stage:Stage IVA, dead, 829 days
166.4
TCGA-C5-A1MP-01A
0 years, female, black or african american, stage:Stage IB, alive, 109 days
166.1
TCGA-BI-A0VR-01A
0 years, female, white, stage:Stage IIIB, alive, 1505 days
164.6
TCGA-DS-A0VM-01A
0 years, female, white, stage:Stage IB, alive, 3589 days
164.4
TCGA-VS-A9UD-01A
0 years, female, white, stage:Stage IIIA, alive, 739 days
164.1
TCGA-C5-A7CJ-01A
0 years, female, white, stage:Stage IIA, dead, 3097 days
162.9
TCGA-EA-A1QT-01A
0 years, female, white, stage:Stage IB, alive, 1243 days
160.9
TCGA-IR-A3LK-01A
0 years, female, white, stage:Stage IB, dead, 908 days
159.1
TCGA-VS-A94W-01A
0 years, female, white, stage:Stage IIB, alive, 1243 days
157.7
TCGA-VS-A9V3-01A
0 years, female, white, stage:Stage IVB, alive, 540 days
150.0
TCGA-ZX-AA5X-01A
0 years, female, white, stage:Stage IIIB, alive, 119 days
145.7
TCGA-C5-A3HL-01A
0 years, female, white, stage:Stage IB, alive, 621 days
137.4
TCGA-VS-A8EC-01A
0 years, female, white, stage:Stage IIIB, alive, 1415 days
132.8
TCGA-EA-A78R-01A
0 years, female, asian, stage:Stage IB, alive, 410 days
128.8
TCGA-C5-A1M9-01A
0 years, female, white, stage:Stage IB, dead, 1065 days
127.5
TCGA-DR-A0ZL-01A
0 years, female, asian, stage:Stage IB, alive, 2669 days
116.6
TCGA-EA-A411-01A
0 years, female, white, stage:Stage IB, alive, 747 days
112.8
TCGA-C5-A8ZZ-01A
0 years, female, white, stage:Stage IIB, alive, 636 days
112.6
TCGA-ZJ-AAXU-01A
0 years, female, white, stage:Stage IIB, alive, 5 days
111.8
TCGA-XS-A8TJ-01A
0 years, female, black or african american, stage:Stage IB, alive, 890 days
110.5
TCGA-C5-A3HF-01A
0 years, female, white, stage:Stage IB, dead, 543 days
104.1
TCGA-C5-A7X5-01A
0 years, female, black or african american, stage:Stage IVB, dead, 414 days
102.6
TCGA-EK-A2RO-01A
0 years, female, american indian or alaska native, stage:Stage IIB, alive, 2 days
93.5
TCGA-EK-A2RB-01A
0 years, female, white, stage:Stage IVB, alive, 9 days
91.3
TCGA-VS-A959-01A
0 years, female, stage:Stage IIB, alive, 1561 days
89.0
TCGA-JW-A5VJ-01A
0 years, female, american indian or alaska native, stage:Stage IIB, alive, 652 days
87.0
TCGA-EX-A69L-01A
0 years, female, asian, stage:Stage IB, alive, 602 days
86.1
TCGA-C5-A1MH-01A
0 years, female, white, stage:Stage IIIB, dead, 1186 days
83.3
TCGA-C5-A7CL-01A
0 years, female, white, stage:Stage IIIB, dead, 471 days
77.1
TCGA-C5-A2LT-01A
0 years, female, white, stage:Stage IB, alive, 2226 days
73.6
TCGA-VS-A953-01A
0 years, female, stage:Stage IVA, dead, 477 days
68.6
TCGA-LP-A4AX-01A
0 years, female, asian, stage:Stage IB, alive, 380 days
63.9
TCGA-EK-A2RC-01A
0 years, female, stage:Stage IB, alive, 129 days
63.8
TCGA-MY-A5BF-01A
0 years, female, white, stage:Stage IIA, alive, 634 days
60.7
TCGA-Q1-A73Q-01A
0 years, female, white, stage:Stage I, alive, 284 days
56.9
TCGA-WL-A834-01A
0 years, female, white, stage:'--, alive, 791 days
54.7
TCGA-C5-A7CK-01A
0 years, female, white, stage:Stage IVA, dead, 4086 days
54.3
TCGA-FU-A3HZ-01A
0 years, female, white, stage:Stage IIA, alive, 1103 days
52.6
TCGA-EK-A3GN-01A
0 years, female, white, stage:Stage IIIB, alive, 27 days
47.7
TCGA-4J-AA1J-01A
0 years, female, white, stage:Stage IB, alive, 542 days
45.8
TCGA-VS-A9UO-01A
0 years, female, white, stage:Stage IIB, alive, 1456 days
42.8
TCGA-LP-A5U2-01A
0 years, female, asian, stage:Stage IIIB, alive, 9 days
42.7
TCGA-EK-A2PK-01A
0 years, female, white, stage:Stage IB, alive, 12 days
38.6
TCGA-FU-A3WB-01A
0 years, female, white, stage:Stage IIA, alive, 491 days
35.8
TCGA-VS-A8EB-01A
0 years, female, white, stage:Stage IIIB, dead, 305 days
34.2
TCGA-C5-A1MN-01A
0 years, female, white, stage:Stage IIIB, dead, 1245 days
33.5
TCGA-C5-A1MK-01A
0 years, female, white, stage:Stage IIIB, dead, 74 days
30.7
TCGA-EA-A5FO-01A
0 years, female, white, stage:Stage IB, alive, 815 days
29.6
TCGA-C5-A902-01A
0 years, female, black or african american, stage:Stage IB, alive, 149 days
29.6
TCGA-VS-A9UZ-01A
0 years, female, white, stage:Stage IB, alive, 2044 days
28.2
TCGA-DG-A2KL-01A
0 years, female, stage:Stage IIA, alive, 1367 days
27.6
TCGA-EA-A5O9-01A
0 years, female, white, stage:Stage IB, alive, 788 days
27.4
TCGA-ZJ-AAXA-01A
0 years, female, white, stage:Stage IB, alive, 43 days
27.1
TCGA-C5-A0TN-01A
0 years, female, black or african american, stage:Stage IB, dead, 348 days
24.8
TCGA-HM-A4S6-01A
0 years, female, white, stage:Stage IIIB, alive, 454 days
24.1
TCGA-C5-A1ME-01A
0 years, female, white, stage:Stage IB, alive, 1756 days
22.8
TCGA-DG-A2KJ-01A
0 years, female, stage:Stage IIIB, alive, 2893 days
22.1
TCGA-IR-A3L7-01A
0 years, female, white, stage:Stage IB, alive, 4483 days
21.7
TCGA-HM-A6W2-01A
0 years, female, black or african american, stage:Stage IVB, alive, 287 days
21.0
TCGA-MY-A913-01A
0 years, female, black or african american, stage:Stage IIA, alive, 524 days
20.7
TCGA-VS-A8QH-01A
0 years, female, white, stage:Stage IB, dead, 1210 days
20.7
TCGA-FU-A3HY-01A
0 years, female, white, stage:Stage IB, alive, 954 days
20.4
TCGA-C5-A1M6-01A
0 years, female, white, stage:Stage IIB, dead, 955 days
19.8
TCGA-EK-A2R7-01A
0 years, female, white, stage:Stage IB, alive, 27 days
19.5
TCGA-VS-A9UL-01A
0 years, female, white, stage:Stage IIIB, dead, 442 days
18.8
TCGA-VS-A94Z-01A
0 years, female, white, stage:Stage IIB, alive, 1015 days
18.7
TCGA-EA-A1QS-01A
0 years, female, white, stage:Stage IB, alive, 1203 days
17.4
TCGA-DS-A1OD-01A
0 years, female, white, stage:Stage IB, alive, 3874 days
17.1
TCGA-MU-A51Y-01A
0 years, female, white, stage:Stage IIA, alive, 854 days
15.7
TCGA-Q1-A73O-01A
0 years, female, stage:Stage IB, alive, 428 days
15.5
TCGA-EK-A3GK-01A
0 years, female, white, stage:Stage IB, alive, 15 days
15.3
TCGA-UC-A7PF-01A
0 years, female, stage:Stage IB, dead, 2859 days
14.2
TCGA-MA-AA3W-01A
0 years, female, white, stage:Stage IB, alive, 685 days
13.8
TCGA-Q1-A5R3-01A
0 years, female, white, stage:'--, alive, 485 days
13.3
TCGA-C5-A905-01A
0 years, female, black or african american, stage:Stage IB, alive, 4879 days
13.1
TCGA-LP-A4AW-01A
0 years, female, asian, stage:Stage IA, alive, 27 days
13.1
TCGA-IR-A3LL-01A
0 years, female, white, stage:Stage IB, alive, 1106 days
12.9
TCGA-VS-A9UR-01A
0 years, female, white, stage:Stage IIA, alive, 793 days
12.5
TCGA-DS-A3LQ-01A
0 years, female, stage:Stage IIIB, alive, 699 days
12.3
TCGA-EK-A2RN-01A
0 years, female, white, stage:Stage IB, alive, 71 days
12.0
TCGA-VS-A8EJ-01A
0 years, female, white, stage:Stage IIB, dead, 607 days
12.0
TCGA-EA-A3QD-01A
0 years, female, white, stage:Stage IIIB, alive, 397 days
11.7
TCGA-LP-A7HU-01A
0 years, female, asian, stage:Stage II, alive, 406 days
11.4
TCGA-Q1-A5R1-01A
0 years, female, white, stage:Stage IB, alive, 474 days
11.2
TCGA-EK-A2RM-01A
0 years, female, white, stage:Stage IB, alive, 50 days
9.8
TCGA-EK-A2R9-01A
0 years, female, white, stage:Stage IB, alive, 4 days
9.8
TCGA-JW-A5VG-01A
0 years, female, american indian or alaska native, stage:Stage IIA, alive, 834 days
9.5
TCGA-EA-A556-01A
0 years, female, white, stage:Stage IB, alive, 453 days
9.0
TCGA-JX-A3Q0-01A
0 years, female, black or african american, stage:Stage III, alive, 6375 days
8.9
TCGA-MU-A5YI-01A
0 years, female, black or african american, stage:Stage IA, alive, 1053 days
7.1
TCGA-C5-A7CO-01A
0 years, female, white, stage:Stage IB, alive, 4482 days
6.8
TCGA-EK-A2PI-01A
0 years, female, white, stage:Stage IIIB, alive, 586 days
6.8
TCGA-FU-A23K-01A
0 years, female, white, stage:Stage IIIB, alive, 372 days
5.9
TCGA-C5-A907-01A
0 years, female, white, stage:Stage IB, alive, 448 days
5.8
TCGA-BI-A20A-01A
0 years, female, white, stage:Stage IB, alive, 720 days
5.6
TCGA-EA-A3HQ-01A
0 years, female, white, stage:Stage II, alive, 1136 days
5.5
TCGA-DS-A1OA-01A
0 years, female, asian, stage:Stage IB, dead, 879 days
5.2
TCGA-EA-A410-01A
0 years, female, white, stage:Stage IIA, alive, 803 days
4.8
TCGA-EA-A4BA-01A
0 years, female, white, stage:Stage IB, alive, 755 days
4.6
TCGA-EA-A3HU-01A
0 years, female, white, stage:Stage II, alive, 1013 days
4.6
TCGA-VS-A9UJ-01A
0 years, female, stage:Stage IIB, dead, 52 days
4.4
TCGA-Q1-A73R-01A
0 years, female, white, stage:Stage I, alive, 567 days
4.2
TCGA-VS-A9V4-01A
0 years, female, white, stage:Stage IVA, dead, 132 days
3.3
TCGA-DG-A2KM-01A
0 years, female, stage:Stage IB, alive, 1946 days
3.2
TCGA-C5-A7X8-01A
0 years, female, white, stage:Stage IB, alive, 83 days
2.9
TCGA-Q1-A6DV-01A
0 years, female, asian, stage:Stage IB, alive, 491 days
2.6
TCGA-EK-A2R8-01A
0 years, female, white, stage:Stage IB, alive, 44 days
2.3
TCGA-EK-A2RL-01A
0 years, female, black or african american, stage:Stage IB, dead, 1453 days
2.2
TCGA-EA-A6QX-01A
0 years, female, asian, stage:Stage IIIB, alive, 730 days
2.1
TCGA-DS-A7WF-01A
0 years, female, stage:Stage IB, dead, 492 days
2.1
TCGA-EX-A8YF-01A
0 years, female, white, stage:Stage IB, alive, 473 days
2.0
TCGA-EX-A1H5-01A
0 years, female, black or african american, stage:Stage IIB, alive, 619 days
1.9
TCGA-JW-A69B-01A
0 years, female, white, stage:Stage IB, alive, 863 days
1.8
TCGA-C5-A1MF-01A
0 years, female, white, stage:Stage IB, alive, 1617 days
1.8
TCGA-C5-A8XJ-01A
0 years, female, white, stage:Stage IB, alive, 4467 days
1.8
TCGA-IR-A3LB-01A
0 years, female, white, stage:Stage IB, dead, 2032 days
1.6
TCGA-FU-A3EO-01A
0 years, female, white, stage:Stage IIB, alive, 490 days
1.4
TCGA-DG-A2KH-01A
0 years, female, stage:Stage IB, alive, 34 days
1.1
TCGA-C5-A1MI-01A
0 years, female, white, stage:Stage IB, dead, 1083 days
0.9
TCGA-MY-A5BE-01A
0 years, female, black or african american, stage:Stage IB, alive, 1066 days
0.8
TCGA-EK-A2IR-01A
0 years, female, white, stage:Stage IB, alive, 3442 days
0.8
TCGA-MA-AA3Z-01A
0 years, female, white, stage:Stage IB, alive, 595 days
0.7
TCGA-VS-A952-01A
0 years, female, white, stage:Stage IB, alive, 1778 days
0.7
TCGA-HM-A3JJ-01A
0 years, female, black or african american, stage:Stage IB, dead, 659 days
0.7
TCGA-LP-A5U3-01A
0 years, female, asian, stage:Stage IB, alive, 25 days
0.7
TCGA-C5-A2M1-01A
0 years, female, white, stage:Stage IB, alive, 1169 days
0.6
TCGA-VS-A9UQ-01A
0 years, female, stage:Stage IB, alive, 1263 days
0.5
TCGA-C5-A2M2-01A
0 years, female, white, stage:Stage IB, dead, 1011 days
0.5
TCGA-FU-A770-01A
0 years, female, white, stage:Stage IIIB, alive, 34 days
0.5
TCGA-Q1-A73P-01A
0 years, female, white, stage:Stage IB, alive, 483 days
0.4
TCGA-C5-A7CG-01A
0 years, female, white, stage:Stage IB, alive, 6408 days
0.3
TCGA-MA-AA42-01A
0 years, female, white, stage:Stage IIB, alive, 259 days
0.2
TCGA-C5-A2LS-01A
0 years, female, white, stage:Stage IB, alive, 1345 days
0.2
TCGA-IR-A3LI-01A
0 years, female, white, stage:Stage IVB, alive, 2493 days
0.2
TCGA-JX-A3Q8-01A
0 years, female, asian, stage:Stage IB, alive, 1357 days
0.1
TCGA-IR-A3LA-01A
0 years, female, white, stage:Stage IB, alive, 4172 days
0.1
TCGA-EX-A449-01A
0 years, female, white, stage:Stage IVB, alive, 447 days
0.1
TCGA-2W-A8YY-01A
0 years, female, white, stage:Stage IB, alive, 533 days
0.1
TCGA-EA-A439-01A
0 years, female, asian, stage:Stage IIA, alive, 965 days
0.1
TCGA-DR-A0ZM-01A
0 years, female, white, stage:Stage IIIB, alive, 1791 days
0.0
TCGA-VS-A8EI-01A
0 years, female, white, stage:Stage IIB, alive, 729 days
0.0
TCGA-IR-A3LC-01A
0 years, female, white, stage:Stage IB, alive, 3935 days
0.0
TCGA-C5-A1MJ-01A
0 years, female, white, stage:Stage IB, dead, 14 days
0.0
TCGA-VS-A9UT-01A
0 years, female, asian, stage:Stage IB, alive, 482 days
0.0
TCGA-C5-A7CM-01A
0 years, female, white, stage:Stage IB, alive, 619 days
0.0
TCGA-VS-A9UP-01A
0 years, female, stage:Stage IIA, alive, 1444 days
0.0
TCGA-C5-A8YT-01A
0 years, female, white, stage:Stage IB, dead, 633 days
0.0
TCGA-FU-A40J-01A
0 years, female, white, stage:Stage IIIB, alive, 426 days
0.0
TCGA-DS-A0VK-01A
0 years, female, white, stage:Stage IB, dead, 1118 days
0.0
TCGA-JX-A3PZ-01A
0 years, female, white, stage:Stage IB, dead, 642 days
0.0
TCGA-HM-A3JK-01A
0 years, female, white, stage:Stage IIA, alive, 632 days
0.0
TCGA-VS-A8QA-01A
0 years, female, stage:Stage IB, alive, 1099 days
0.0
TCGA-C5-A7X3-01A
0 years, female, white, stage:Stage IIIB, dead, 284 days
0.0
TCGA-IR-A3LF-01A
0 years, female, white, stage:Stage IB, alive, 2949 days
0.0
TCGA-C5-A8YR-01A
0 years, female, white, stage:Stage IB, dead, 837 days
0.0
TCGA-C5-A2LV-01A
0 years, female, black or african american, stage:Stage IB, alive, 2234 days
0.0
TCGA-FU-A57G-01A
0 years, female, white, stage:Stage IB, alive, 1078 days
0.0
TCGA-PN-A8MA-01A
0 years, female, black or african american, stage:Stage IIB, alive, 90 days
0.0
TCGA-JW-A5VH-01A
0 years, female, american indian or alaska native, stage:Stage IVB, dead, 100 days
0.0
TCGA-VS-A9V5-01A
0 years, female, white, stage:Stage IIB, dead, 494 days
0.0
TCGA-MY-A5BD-01A
0 years, female, white, stage:Stage IIB, alive, 1667 days
0.0
TCGA-UC-A7PI-01A
0 years, female, white, stage:Stage IB, alive, 2114 days
0.0
TCGA-DS-A7WH-01A
0 years, female, white, stage:Stage IB, alive, 533 days
0.0
TCGA-FU-A3TX-01A
0 years, female, stage:Stage IB, alive, 45 days
0.0
TCGA-MA-AA41-01A
0 years, female, white, stage:Stage IIB, alive, 279 days
0.0
TCGA-IR-A3LH-01A
0 years, female, black or african american, stage:Stage IIA, alive, 2394 days
0.0
TCGA-VS-A9V1-01A
0 years, female, white, stage:Stage IVB, dead, 157 days
0.0
TCGA-C5-A3HE-01A
0 years, female, white, stage:Stage IB, alive, 548 days
0.0
TCGA-C5-A2LX-01A
0 years, female, white, stage:Stage IB, alive, 2526 days
0.0
TCGA-VS-A9U5-01A
0 years, female, white, stage:Stage IIB, alive, 1535 days
0.0
TCGA-DS-A1O9-01A
0 years, female, white, stage:Stage IVA, dead, 266 days
0.0
TCGA-VS-A9V0-01A
0 years, female, stage:Stage IB, alive, 573 days
0.0
TCGA-EA-A5ZF-01A
0 years, female, asian, stage:Stage IB, alive, 828 days
0.0
TCGA-EA-A5ZE-01A
0 years, female, asian, stage:Stage IB, alive, 829 days
0.0
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CERVICAL CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.