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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC27A3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
86.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
82.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
77.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
62.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
62.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
61.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
59.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
59.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
57.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
55.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
52.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
48.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
46.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
45.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
44.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
43.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
43.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
41.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
40.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
40.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
39.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
39.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
37.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
37.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
36.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
36.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
35.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
35.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
34.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
34.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
33.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
33.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
32.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
32.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
32.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
31.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
31.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
30.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
30.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
30.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
29.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
29.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
29.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
29.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
29.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
28.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
28.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
28.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
27.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
27.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
27.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
26.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
26.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
25.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
25.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
25.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
25.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
25.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
25.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
25.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
25.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
25.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
24.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
24.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
24.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
24.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
23.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
23.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
23.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
23.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
22.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
22.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
22.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
22.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
21.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
21.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
21.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
21.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
21.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
20.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
20.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
20.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
19.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
19.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
19.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
19.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
19.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
19.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
18.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
18.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
18.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
18.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
17.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
17.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
17.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
17.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
17.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
17.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
17.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
17.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
17.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
16.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
16.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
16.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
16.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
16.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
16.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
16.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
16.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
16.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
16.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
16.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
16.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
15.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
15.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
15.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
15.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
15.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
15.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
14.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
14.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
14.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
14.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
14.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
14.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
14.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
14.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
13.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
13.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
13.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
13.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
13.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
13.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
13.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
13.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
13.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
12.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
12.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
12.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
12.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
12.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
12.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
12.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
11.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
11.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
11.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
11.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
10.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
10.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
10.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
9.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
9.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
9.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
9.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
9.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
8.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
8.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
8.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
7.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
7.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
7.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
7.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
6.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
6.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
5.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
5.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
5.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
5.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
5.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
5.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
4.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
4.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
4.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
4.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
4.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
4.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
3.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
3.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
3.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
3.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
3.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
2.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
2.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
2.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
2.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
2.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
2.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
2.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
2.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
2.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
1.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
1.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
1.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
1.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC27A3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.1
Number of samples
231
Samples
Sample
Description
TPM
DO50855
0 years, male, NA, stage:2, alive, 570 days
106.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
93.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
79.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
78.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
74.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
70.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
65.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
64.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
64.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
64.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
62.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
59.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
53.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
52.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
50.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
49.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
49.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
46.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
45.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
45.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
42.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
42.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
41.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
40.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
40.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
40.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
39.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
39.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
37.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
37.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
37.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
37.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
36.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
35.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
35.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
35.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
34.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
34.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
33.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
33.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
32.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
31.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
31.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
31.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
31.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
30.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
30.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
30.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
30.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
29.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
29.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
28.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
28.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
28.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
27.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
27.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
27.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
26.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
26.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
26.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
25.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
25.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
25.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
25.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
25.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
24.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
24.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
24.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
24.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
24.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
24.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
24.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
24.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
23.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
23.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
23.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
23.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
23.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
22.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
22.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
22.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
22.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
21.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
21.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
21.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
21.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
21.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
21.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
21.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
21.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
21.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
21.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
21.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
20.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
20.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
20.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
20.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
20.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
20.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
20.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
19.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
19.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
19.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
19.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
19.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
19.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
19.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
18.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
18.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
18.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
18.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
18.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
18.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
18.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
18.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
17.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
17.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
17.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
17.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
17.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
17.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
16.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
16.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
16.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
16.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
16.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
15.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
15.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
15.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
15.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
15.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
15.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
15.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
15.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
15.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
15.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
15.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
15.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
14.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
14.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
14.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
14.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
14.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
14.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
14.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
14.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
14.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
13.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
13.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
13.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
13.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
13.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
13.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
13.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
12.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
12.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
12.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
12.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
12.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
12.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
12.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
11.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
11.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
11.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
10.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
10.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
9.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
9.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
8.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
8.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
7.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
6.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
6.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
6.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
5.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
5.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
5.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
4.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
3.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
1.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
727
Tumor
1.3
647
Tumor
1.2
357
Tumor
1.2
271
Tumor
1.2
277
Tumor
1.1
445
Tumor
1.1
313
Tumor
0.9
123
Tumor
0.9
813
Tumor
0.9
1013
Tumor
0.9
635
Tumor
0.8
641
Tumor
0.8
355
Tumor
0.7
341
Tumor
0.7
923
Tumor
0.7
465
Tumor
0.7
431
Tumor
0.6
873
Tumor
0.6
435
Tumor
0.6
481
Tumor
0.6
921
Tumor
0.6
957
Tumor
0.6
1031
Tumor
0.6
463
Tumor
0.6
553
Tumor
0.6
737
Tumor
0.6
881
Tumor
0.5
221
Tumor
0.5
695
Tumor
0.5
161
Tumor
0.5
211
Tumor
0.5
393
Tumor
0.5
411
Tumor
0.4
471
Tumor
0.4
1021
Tumor
0.4
147
Tumor
0.4
672
Normal
0.4
171
Tumor
0.4
814
Normal
0.3
427
Tumor
0.3
878
Normal
0.3
214
Normal
0.3
951
Tumor
0.3
817
Tumor
0.3
124
Normal
0.3
557
Tumor
0.2
516
Normal
0.2
114
Normal
0.2
452
Normal
0.2
361
Tumor
0.2
1045
Tumor
0.2
125
Tumor
0.2
384
Normal
0.2
883
Tumor
0.2
745
Tumor
0.2
571
Tumor
0.2
744
Normal
0.2
477
Tumor
0.2
342
Normal
0.2
636
Normal
0.2
864
Normal
0.2
944
Normal
0.2
984
Normal
0.2
312
Normal
0.2
785
Tumor
0.2
195
Tumor
0.2
422
Normal
0.2
857
Tumor
0.2
662
Normal
0.2
423
Tumor
0.2
1032
Normal
0.1
1042
Normal
0.1
412
Normal
0.1
272
Normal
0.1
955
Tumor
0.1
954
Normal
0.1
738
Normal
0.1
468
Normal
0.1
922
Normal
0.1
314
Normal
0.1
356
Normal
0.1
976
Normal
0.1
362
Normal
0.1
975
Tumor
0.1
852
Normal
0.1
963
Tumor
0.1
488
Normal
0.1
344
Normal
0.1
426
Normal
0.1
528
Normal
0.1
648
Normal
0.1
142
Normal
0.1
278
Normal
0.1
494
Normal
0.1
267
Tumor
0.1
982
Normal
0.1
354
Normal
0.1
1043
Tumor
0.0
352
Normal
0.0
425
Tumor
0.0
525
Tumor
0.0
1014
Normal
0.0
665
Tumor
0.0
448
Normal
0.0
136
Normal
0.0
138
Normal
0.0
186
Normal
0.0
185
Tumor
0.0
545
Tumor
0.0
696
Normal
0.0
572
Normal
0.0
413
Tumor
0.0
716
Normal
0.0
546
Normal
0.0
262
Normal
0.0
224
Normal
0.0
196
Normal
0.0
953
Tumor
0.0
387
Tumor
0.0
746
Normal
0.0
443
Tumor
0.0
268
Normal
0.0
618
Normal
0.0
497
Tumor
0.0
228
Normal
0.0
851
Tumor
0.0
568
Normal
0.0
444
Normal
0.0
414
Normal
0.0
952
Normal
0.0
865
Tumor
0.0
433
Tumor
0.0
778
Normal
0.0
1044
Normal
0.0
388
Normal
0.0
376
Normal
0.0
664
Normal
0.0
956
Normal
-0.1
918
Normal
-0.1
533
Tumor
-0.1
212
Normal
-0.1
527
Tumor
-0.1
434
Normal
-0.1
358
Normal
-0.1
148
Normal
-0.1
977
Tumor
-0.1
558
Normal
-0.1
534
Normal
-0.1
383
Tumor
-0.1
554
Normal
-0.1
742
Normal
-0.1
686
Normal
-0.1
135
Tumor
-0.1
574
Normal
-0.1
284
Normal
-0.1
392
Normal
-0.1
366
Normal
-0.1
127
Tumor
-0.1
671
Tumor
-0.1
538
Normal
-0.1
564
Normal
-0.1
137
Tumor
-0.1
298
Normal
-0.1
914
Normal
-0.1
713
Tumor
-0.1
628
Normal
-0.1
213
Tumor
-0.1
617
Tumor
-0.1
786
Normal
-0.1
666
Normal
-0.1
978
Normal
-0.1
715
Tumor
-0.1
456
Normal
-0.1
478
Normal
-0.1
514
Normal
-0.1
466
Normal
-0.1
493
Tumor
-0.1
755
Tumor
-0.1
432
Normal
-0.1
492
Normal
-0.1
966
Normal
-0.1
958
Normal
-0.2
642
Normal
-0.2
1028
Normal
-0.2
128
Normal
-0.2
517
Tumor
-0.2
446
Normal
-0.2
924
Normal
-0.2
462
Normal
-0.2
756
Normal
-0.2
874
Normal
-0.2
912
Normal
-0.2
328
Normal
-0.2
464
Normal
-0.2
424
Normal
-0.2
428
Normal
-0.2
916
Normal
-0.2
868
Normal
-0.2
467
Tumor
-0.2
146
Normal
-0.2
491
Tumor
-0.2
375
Tumor
-0.2
728
Normal
-0.2
824
Normal
-0.2
882
Normal
-0.2
816
Normal
-0.2
723
Tumor
-0.2
484
Normal
-0.2
1016
Normal
-0.2
818
Normal
-0.2
741
Tumor
-0.2
866
Normal
-0.2
483
Tumor
-0.2
968
Normal
-0.2
523
Tumor
-0.2
513
Tumor
-0.2
111
Normal
-0.2
926
Normal
-0.2
286
Normal
-0.3
436
Normal
-0.3
722
Normal
-0.3
526
Normal
-0.3
394
Normal
-0.3
126
Normal
-0.3
191
Tumor
-0.3
113
Tumor
-0.3
285
Tumor
-0.3
884
Normal
-0.3
415
Tumor
-0.3
1026
Normal
-0.3
364
Normal
-0.3
714
Normal
-0.3
1046
Normal
-0.3
925
Tumor
-0.3
261
Tumor
-0.3
1027
Tumor
-0.3
482
Normal
-0.3
964
Normal
-0.3
162
Normal
-0.3
1022
Normal
-0.3
421
Tumor
-0.3
332
Normal
-0.3
297
Tumor
-0.3
172
Normal
-0.3
472
Normal
-0.3
112
Tumor
-0.3
524
Normal
-0.4
447
Tumor
-0.4
697
Tumor
-0.4
877
Tumor
-0.4
222
Normal
-0.4
258
Normal
-0.4
721
Tumor
-0.4
917
Tumor
-0.4
365
Tumor
-0.4
487
Tumor
-0.4
391
Tumor
-0.4
863
Tumor
-0.4
823
Tumor
-0.4
563
Tumor
-0.4
192
Normal
-0.4
498
Normal
-0.5
343
Tumor
-0.5
353
Tumor
-0.5
983
Tumor
-0.5
327
Tumor
-0.5
141
Tumor
-0.5
396
Normal
-0.5
518
Normal
-0.5
351
Tumor
-0.5
395
Tumor
-0.5
698
Normal
-0.5
368
Normal
-0.5
232
Normal
-0.5
777
Tumor
-0.5
536
Normal
-0.5
416
Normal
-0.6
311
Tumor
-0.6
938
Normal
-0.6
455
Tumor
-0.6
257
Tumor
-0.6
474
Normal
-0.6
451
Tumor
-0.6
663
Tumor
-0.6
218
Normal
-0.6
227
Tumor
-0.6
616
Normal
-0.6
145
Tumor
-0.6
188
Normal
-0.6
915
Tumor
-0.6
981
Tumor
-0.7
223
Tumor
-0.7
331
Tumor
-0.7
461
Tumor
-0.7
1025
Tumor
-0.7
573
Tumor
-0.7
965
Tumor
-0.7
661
Tumor
-0.7
386
Normal
-0.7
363
Tumor
-0.7
937
Tumor
-0.7
615
Tumor
-0.8
862
Normal
-0.8
858
Normal
-0.8
217
Tumor
-0.8
187
Tumor
-0.8
943
Tumor
-0.8
627
Tumor
-0.9
283
Tumor
-0.9
967
Tumor
-0.9
724
Normal
-0.9
1041
Tumor
-0.9
685
Tumor
-0.9
231
Tumor
-1.0
743
Tumor
-1.0
911
Tumor
-1.0
515
Tumor
-1.0
1015
Tumor
-1.1
537
Tumor
-1.1
567
Tumor
-1.1
535
Tumor
-1.1
132
Normal
-1.2
867
Tumor
-1.2
913
Tumor
-1.2
367
Tumor
-1.2
385
Tumor
-1.2
131
Tumor
-1.3
815
Tumor
-1.5
473
Tumor
-1.6
861
Tumor
-1.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.