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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SNAPIN is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
32.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
102.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
97.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
95.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
81.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
81.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
77.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
75.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
74.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
73.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
70.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
67.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
66.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
66.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
66.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
65.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
65.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
63.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
63.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
62.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
61.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
59.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
58.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
56.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
55.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
54.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
54.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
54.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
54.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
53.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
53.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
53.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
52.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
51.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
51.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
51.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
51.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
50.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
50.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
49.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
49.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
49.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
49.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
49.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
48.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
48.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
48.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
47.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
47.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
47.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
47.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
47.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
46.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
46.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
46.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
46.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
46.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
45.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
45.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
45.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
45.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
45.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
45.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
44.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
44.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
44.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
44.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
44.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
43.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
43.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
43.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
43.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
43.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
42.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
42.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
41.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
41.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
41.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
41.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
41.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
40.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
40.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
40.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
40.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
40.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
39.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
39.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
39.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
39.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
39.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
38.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
38.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
38.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
38.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
38.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
38.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
38.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
38.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
38.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
38.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
38.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
38.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
37.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
37.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
37.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
37.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
36.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
36.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
36.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
36.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
36.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
36.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
36.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
36.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
36.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
36.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
36.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
36.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
36.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
35.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
35.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
35.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
35.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
35.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
35.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
35.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
35.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
35.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
34.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
34.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
34.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
34.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
34.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
33.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
33.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
33.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
33.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
33.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
33.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
33.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
33.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
33.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
33.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
33.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
33.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
33.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
33.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
32.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
32.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
32.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
32.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
32.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
32.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
32.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
32.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
32.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
32.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
32.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
31.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
31.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
31.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
31.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
31.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
31.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
31.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
31.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
31.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
31.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
31.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
31.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
31.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
31.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
31.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
30.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
30.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
30.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
30.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
30.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
30.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
30.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
30.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
30.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
30.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
30.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
30.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
29.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
29.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
29.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
29.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
29.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
29.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
29.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
29.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
29.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
28.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
28.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
28.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
28.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
28.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
28.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
28.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
28.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
28.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
28.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
28.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
28.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
27.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
27.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
27.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
27.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
27.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
27.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
27.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
27.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
27.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
26.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
26.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
26.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
26.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
26.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
26.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
26.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
26.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
26.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
26.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
26.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
26.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
26.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
26.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
26.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
26.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
26.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
25.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
25.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
25.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
25.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
25.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
25.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
25.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
25.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
25.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
25.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
25.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
25.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
25.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
25.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
25.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
24.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
24.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
24.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
24.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
24.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
24.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
24.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
24.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
24.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
24.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
23.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
23.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
23.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
23.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
23.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
23.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
23.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
23.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
23.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
23.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
22.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
22.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
22.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
22.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
22.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
22.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
22.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
22.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
22.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
22.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
22.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
22.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
22.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
21.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
21.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
21.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
21.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
20.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
20.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
20.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
20.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
20.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
20.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
20.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
20.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
20.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
20.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
20.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
20.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
20.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
20.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
19.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
19.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
19.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
19.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
19.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
19.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
19.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
19.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
18.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
18.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
18.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
18.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
17.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
17.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
17.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
17.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
17.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
17.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
17.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
17.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
17.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
16.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
16.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
16.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
16.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
16.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
15.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
15.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
15.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
15.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
15.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
15.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
15.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
15.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
15.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
15.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
15.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
14.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
14.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
14.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
14.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
13.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
13.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
13.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
13.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
13.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
13.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
13.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
13.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
12.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
12.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
12.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
12.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
11.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
11.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
9.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SNAPIN is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
29.9
Number of samples
231
Samples
Sample
Description
TPM
DO50829
0 years, male, NA, stage:3, alive, 570 days
85.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
81.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
77.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
72.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
62.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
62.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
61.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
60.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
59.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
58.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
57.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
53.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
52.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
49.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
48.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
47.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
47.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
47.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
46.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
46.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
45.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
45.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
44.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
43.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
42.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
42.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
42.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
41.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
41.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
41.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
41.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
41.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
41.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
41.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
40.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
40.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
40.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
39.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
39.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
39.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
39.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
39.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
38.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
38.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
38.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
38.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
38.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
38.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
38.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
38.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
37.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
37.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
37.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
37.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
35.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
35.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
35.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
35.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
35.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
34.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
34.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
34.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
34.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
34.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
34.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
34.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
33.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
33.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
33.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
33.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
33.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
33.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
33.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
33.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
33.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
32.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
32.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
32.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
32.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
32.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
31.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
31.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
31.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
31.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
31.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
31.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
31.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
30.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
30.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
30.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
30.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
30.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
30.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
30.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
30.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
30.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
30.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
30.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
29.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
29.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
29.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
29.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
29.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
29.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
29.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
28.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
28.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
28.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
28.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
28.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
28.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
28.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
28.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
28.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
27.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
27.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
27.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
27.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
27.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
27.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
27.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
27.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
27.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
26.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
26.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
26.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
26.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
26.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
26.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
26.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
26.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
26.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
26.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
25.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
25.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
25.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
25.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
25.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
25.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
25.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
25.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
25.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
25.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
25.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
25.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
25.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
24.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
24.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
24.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
24.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
24.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
24.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
24.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
24.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
24.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
24.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
24.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
23.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
23.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
23.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
23.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
23.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
23.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
22.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
22.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
22.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
22.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
22.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
22.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
22.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
21.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
21.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
21.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
21.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
21.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
21.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
21.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
21.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
21.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
21.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
21.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
21.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
21.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
20.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
20.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
20.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
20.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
20.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
20.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
20.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
19.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
19.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
19.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
19.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
19.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
19.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
18.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
18.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
18.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
18.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
18.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
17.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
17.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
16.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
16.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
16.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
16.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
16.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
16.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
16.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
16.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
15.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
15.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
15.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
14.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
14.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
14.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
14.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
14.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
13.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
13.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
13.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
10.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
10.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
271
Tumor
0.7
553
Tumor
0.7
571
Tumor
0.6
231
Tumor
0.6
641
Tumor
0.6
125
Tumor
0.6
221
Tumor
0.5
557
Tumor
0.5
367
Tumor
0.5
661
Tumor
0.4
533
Tumor
0.4
451
Tumor
0.4
368
Normal
0.4
745
Tumor
0.4
395
Tumor
0.4
268
Normal
0.4
257
Tumor
0.4
617
Tumor
0.4
721
Tumor
0.4
147
Tumor
0.4
823
Tumor
0.4
171
Tumor
0.4
741
Tumor
0.4
455
Tumor
0.4
443
Tumor
0.4
387
Tumor
0.3
951
Tumor
0.3
477
Tumor
0.3
467
Tumor
0.3
267
Tumor
0.3
851
Tumor
0.3
361
Tumor
0.3
363
Tumor
0.3
724
Normal
0.3
471
Tumor
0.3
567
Tumor
0.3
185
Tumor
0.3
527
Tumor
0.3
385
Tumor
0.3
545
Tumor
0.3
478
Normal
0.3
135
Tumor
0.3
573
Tumor
0.3
261
Tumor
0.3
421
Tumor
0.3
123
Tumor
0.3
431
Tumor
0.3
663
Tumor
0.3
313
Tumor
0.3
481
Tumor
0.3
327
Tumor
0.3
1021
Tumor
0.3
343
Tumor
0.3
277
Tumor
0.3
375
Tumor
0.3
311
Tumor
0.3
537
Tumor
0.3
262
Normal
0.2
563
Tumor
0.2
564
Normal
0.2
124
Normal
0.2
213
Tumor
0.2
126
Normal
0.2
191
Tumor
0.2
957
Tumor
0.2
568
Normal
0.2
161
Tumor
0.2
272
Normal
0.2
113
Tumor
0.2
925
Tumor
0.2
384
Normal
0.2
671
Tumor
0.2
366
Normal
0.2
743
Tumor
0.2
127
Tumor
0.2
427
Tumor
0.2
574
Normal
0.2
218
Normal
0.2
881
Tumor
0.2
616
Normal
0.2
1025
Tumor
0.1
434
Normal
0.1
258
Normal
0.1
817
Tumor
0.1
493
Tumor
0.1
362
Normal
0.1
468
Normal
0.1
227
Tumor
0.1
777
Tumor
0.1
188
Normal
0.1
114
Normal
0.1
217
Tumor
0.1
695
Tumor
0.1
415
Tumor
0.1
953
Tumor
0.1
351
Tumor
0.1
195
Tumor
0.1
728
Normal
0.1
386
Normal
0.1
474
Normal
0.1
355
Tumor
0.1
444
Normal
0.1
446
Normal
0.1
396
Normal
0.1
558
Normal
0.1
131
Tumor
0.1
628
Normal
0.1
778
Normal
0.1
911
Tumor
0.1
672
Normal
0.1
737
Tumor
0.1
432
Normal
0.1
744
Normal
0.1
824
Normal
0.1
424
Normal
0.1
391
Tumor
0.1
341
Tumor
0.1
635
Tumor
0.1
723
Tumor
0.1
392
Normal
0.1
877
Tumor
0.1
921
Tumor
0.1
686
Normal
0.1
112
Tumor
0.1
857
Tumor
0.1
411
Tumor
0.1
426
Normal
0.1
464
Normal
0.1
433
Tumor
0.1
538
Normal
0.1
423
Tumor
0.1
1043
Tumor
0.1
818
Normal
0.1
738
Normal
0.1
814
Normal
0.1
224
Normal
0.1
883
Tumor
0.1
648
Normal
0.1
852
Normal
0.1
136
Normal
0.0
388
Normal
0.0
664
Normal
0.0
447
Tumor
0.0
727
Tumor
0.0
858
Normal
0.0
742
Normal
0.0
463
Tumor
0.0
955
Tumor
0.0
364
Normal
0.0
357
Tumor
0.0
192
Normal
0.0
861
Tumor
0.0
914
Normal
0.0
975
Tumor
0.0
746
Normal
0.0
376
Normal
0.0
422
Normal
0.0
297
Tumor
0.0
214
Normal
0.0
413
Tumor
0.0
968
Normal
0.0
874
Normal
0.0
813
Tumor
0.0
436
Normal
0.0
642
Normal
0.0
983
Tumor
0.0
331
Tumor
0.0
435
Tumor
0.0
412
Normal
0.0
954
Normal
0.0
187
Tumor
0.0
414
Normal
0.0
697
Tumor
0.0
162
Normal
0.0
137
Tumor
0.0
284
Normal
0.0
572
Normal
0.0
223
Tumor
0.0
465
Tumor
0.0
666
Normal
0.0
472
Normal
0.0
1028
Normal
0.0
394
Normal
0.0
722
Normal
0.0
636
Normal
0.0
111
Normal
0.0
356
Normal
0.0
498
Normal
0.0
937
Tumor
0.0
866
Normal
0.0
212
Normal
0.0
963
Tumor
0.0
1031
Tumor
0.0
647
Tumor
0.0
428
Normal
0.0
492
Normal
0.0
912
Normal
0.0
618
Normal
0.0
146
Normal
0.0
943
Tumor
0.0
298
Normal
0.0
128
Normal
0.0
172
Normal
0.0
353
Tumor
0.0
462
Normal
0.0
713
Tumor
0.0
461
Tumor
0.0
344
Normal
0.0
494
Normal
0.0
393
Tumor
0.0
662
Normal
0.0
278
Normal
0.0
142
Normal
0.0
466
Normal
0.0
222
Normal
0.0
917
Tumor
0.0
816
Normal
0.0
283
Tumor
0.0
952
Normal
0.0
1013
Tumor
-0.1
978
Normal
-0.1
138
Normal
-0.1
615
Tumor
-0.1
756
Normal
-0.1
416
Normal
-0.1
332
Normal
-0.1
554
Normal
-0.1
884
Normal
-0.1
868
Normal
-0.1
867
Tumor
-0.1
352
Normal
-0.1
786
Normal
-0.1
528
Normal
-0.1
312
Normal
-0.1
482
Normal
-0.1
967
Tumor
-0.1
145
Tumor
-0.1
425
Tumor
-0.1
546
Normal
-0.1
456
Normal
-0.1
534
Normal
-0.1
1014
Normal
-0.1
715
Tumor
-0.1
354
Normal
-0.1
314
Normal
-0.1
452
Normal
-0.1
862
Normal
-0.1
132
Normal
-0.1
815
Tumor
-0.1
186
Normal
-0.1
716
Normal
-0.1
1022
Normal
-0.1
923
Tumor
-0.1
913
Tumor
-0.1
665
Tumor
-0.1
286
Normal
-0.1
984
Normal
-0.1
966
Normal
-0.1
517
Tumor
-0.1
383
Tumor
-0.1
232
Normal
-0.1
977
Tumor
-0.1
1016
Normal
-0.1
228
Normal
-0.1
1041
Tumor
-0.1
785
Tumor
-0.1
196
Normal
-0.1
956
Normal
-0.1
714
Normal
-0.1
525
Tumor
-0.1
358
Normal
-0.1
488
Normal
-0.1
328
Normal
-0.2
965
Tumor
-0.2
445
Tumor
-0.2
864
Normal
-0.2
878
Normal
-0.2
1027
Tumor
-0.2
285
Tumor
-0.2
938
Normal
-0.2
944
Normal
-0.2
882
Normal
-0.2
448
Normal
-0.2
491
Tumor
-0.2
473
Tumor
-0.2
211
Tumor
-0.2
342
Normal
-0.2
148
Normal
-0.2
976
Normal
-0.2
515
Tumor
-0.2
696
Normal
-0.2
964
Normal
-0.2
484
Normal
-0.2
365
Tumor
-0.2
958
Normal
-0.2
516
Normal
-0.2
497
Tumor
-0.2
981
Tumor
-0.2
916
Normal
-0.2
1026
Normal
-0.3
873
Tumor
-0.3
524
Normal
-0.3
526
Normal
-0.3
755
Tumor
-0.3
926
Normal
-0.3
487
Tumor
-0.3
536
Normal
-0.3
685
Tumor
-0.3
518
Normal
-0.3
982
Normal
-0.3
141
Tumor
-0.3
1044
Normal
-0.3
513
Tumor
-0.3
863
Tumor
-0.3
698
Normal
-0.3
915
Tumor
-0.3
1042
Normal
-0.4
514
Normal
-0.4
483
Tumor
-0.4
1032
Normal
-0.4
924
Normal
-0.4
918
Normal
-0.4
865
Tumor
-0.4
1015
Tumor
-0.4
627
Tumor
-0.4
1045
Tumor
-0.5
922
Normal
-0.5
523
Tumor
-0.5
535
Tumor
-0.5
1046
Normal
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
