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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
70.6
nTPM
HPA Brain:
10.4
nTPM
GTEx:
70.6
nTPM
FANTOM5:
53.8
Scaled Tags Per Million
Pig:
1.3
nTPM
Mouse:
0.2
nTPM
Allen mouse:
0.0
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
10.4
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 4.4
1870
Female, age 42, unknown
7.6
2828
Female, age 72, unknown
6.5
2411
Female, age 72, unknown
6.2
2019
Male, age 18, unknown
5.4
1827
Male, age 72, unknown
5.2
1833
Male, age 53, unknown
4.3
1830
Male, age 51, unknown
3.6
2666
Male, age 74, left hemisphere
2.2
2219
Male, age 76, both hemispheres
1.6
2586
Male, age 75, left hemisphere
1.6
Dorsal raphe nucleus nTPM: 10.4
2298
Female, age 72, unknown
24.8
2750
Male, age 76, both hemispheres
8.9
1828
Male, age 53, unknown
7.2
2047
Male, age 72, unknown
6.1
2016
Female, age 72, unknown
5.0
Inferior colliculus nTPM: 4.6
2097
Female, age 72, unknown
6.7
1848
Female, age 42, unknown
4.8
2849
Male, age 72, unknown
4.3
1890
Male, age 53, unknown
2.5
Median raphe nucleus nTPM: 4.4
2220
Male, age 76, midline
4.4
Periaquaductal grey, anterior nTPM: 4.5
1795
Male, age 51, unknown
4.8
1947
Male, age 18, unknown
4.5
2502
Female, age 75, unknown
4.1
Periaquaductal grey, dorsal nTPM: 4.8
2464
Female, age 72, unknown
6.5
1831
Male, age 72, unknown
6.1
1840
Male, age 53, unknown
3.7
2850
Male, age 76, both hemispheres
2.8
Periaquaductal grey, lateral nTPM: 3.5
2053
Male, age 18, unknown
4.8
2272
Male, age 74, both hemispheres
3.2
2140
Male, age 76, both hemispheres
2.5
Pretectal area nTPM: 6.1
1817
Female, age 42, unknown
11.4
2273
Male, age 74, both hemispheres
8.5
2316
Male, age 76, right hemisphere
8.4
1944
Female, age 72, unknown
7.4
1815
Male, age 53, unknown
6.8
1816
Male, age 51, unknown
6.5
2007
Male, age 72, unknown
4.7
2407
Male, age 75, both hemispheres
4.3
2825
Male, age 18, unknown
3.8
2667
Female, age 75, unknown
3.2
2224
Female, age 72, unknown
2.1
Red nucleus nTPM: 7.3
1821
Female, age 72, unknown
11.6
2503
Female, age 72, unknown
11.4
2823
Male, age 76, right hemisphere
10.6
2588
Male, age 74, left hemisphere
10.2
2725
Female, age 75, unknown
8.3
1954
Female, age 42, unknown
6.3
1904
Male, age 53, unknown
5.7
1865
Male, age 51, unknown
5.6
2227
Male, age 72, unknown
5.5
2785
Male, age 18, unknown
5.3
2769
Male, age 72, unknown
4.7
2584
Male, age 75, left hemisphere
2.0
Substantia nigra nTPM: 4.8
2241
Male, age 72, unknown
8.2
1851
Male, age 51, unknown
6.5
2409
Female, age 72, unknown
6.2
2665
Male, age 74, both hemispheres
5.9
2590
Female, age 75, unknown
5.0
2699
Male, age 18, unknown
4.6
1889
Female, age 72, unknown
4.1
1941
Male, age 53, unknown
3.0
1916
Female, age 42, unknown
2.3
2583
Male, age 75, right hemisphere
1.9
Superior colliculus nTPM: 6.2
2587
Male, age 74, left hemisphere
12.8
1895
Male, age 76, right hemisphere
8.3
1796
Male, age 53, unknown
7.7
2668
Female, age 75, unknown
7.4
1995
Male, age 72, unknown
5.4
2261
Male, age 18, unknown
5.4
1839
Male, age 51, unknown
5.3
1913
Female, age 42, unknown
4.1
2087
Female, age 72, unknown
3.9
2664
Male, age 75, both hemispheres
2.0
Ventral tegmental area nTPM: 8.2
2021
Male, age 53, unknown
16.1
2218
Male, age 76, both hemispheres
9.5
2410
Female, age 72, unknown
7.3
1915
Female, age 42, unknown
7.2
1942
Male, age 51, unknown
5.9
2223
Female, age 72, unknown
3.3
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
70.6
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 70.6
Samples: 139
Max nTPM: 448.8
Min nTPM: 1.0
Std nTPM: 88.7
Median nTPM: 30.3
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
448.8
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
426.4
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
396.8
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
333.2
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
318.7
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
294.3
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
265.9
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
244.2
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
242.9
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
229.5
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
207.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
195.6
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
194.0
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
191.8
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
188.2
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
185.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
182.9
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
162.3
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
161.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
159.9
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
156.9
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
145.5
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
139.1
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
134.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
126.4
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
121.9
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
121.1
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
114.6
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
109.6
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
101.8
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
101.7
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
101.6
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
101.2
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
100.8
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
100.1
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
98.8
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
94.7
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
93.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
88.2
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
86.9
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
85.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
83.2
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
81.9
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
78.2
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
76.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
68.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
66.2
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
63.7
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
63.5
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
59.9
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
59.1
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
56.2
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
56.2
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
55.8
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
52.7
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
50.6
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
50.2
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
47.2
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
46.4
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
45.3
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
45.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
41.7
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
39.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
36.3
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
32.6
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
32.1
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
32.0
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
31.8
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
30.6
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
30.3
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
29.2
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
29.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
28.9
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
28.9
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
28.5
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
27.0
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
26.8
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
26.5
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
25.4
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
25.4
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
25.3
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
24.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
23.6
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
22.3
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
22.1
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
21.0
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
21.0
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
19.2
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
18.8
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
18.0
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
17.3
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
16.3
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
16.0
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
15.1
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
15.0
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
14.8
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
14.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
14.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
14.4
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
14.3
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
14.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
13.6
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
13.0
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
12.7
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
12.4
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
12.1
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
11.8
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
11.6
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
11.4
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
10.6
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
10.2
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
10.1
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
10.1
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
9.9
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
9.6
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
9.6
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
9.4
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
8.7
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
7.5
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
7.3
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
6.6
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
6.1
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
6.1
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
6.1
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
6.0
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
5.9
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
5.8
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
5.6
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
5.6
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
4.2
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
3.9
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
3.4
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
3.4
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
3.0
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
3.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
3.0
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
2.9
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
2.4
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
1.0
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
0.2
Mouse sample
Sample description
nTPM
Midbrain nTPM: 0.3
Samples: 4
Max nTPM: 0.6
Min nTPM: 0.0
Sample A
Male
0.0
Sample B
Male
0.5
Sample C
Female
0.6
Sample D
Female
0.0
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.