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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ADAM15 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
133.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
113.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
96.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
89.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
85.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
83.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
78.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
76.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
73.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
71.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
65.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
65.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
65.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
65.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
59.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
59.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
58.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
57.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
55.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
55.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
55.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
55.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
54.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
53.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
53.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
51.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
51.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
51.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
50.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
47.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
47.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
47.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
47.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
47.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
46.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
46.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
45.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
45.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
44.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
44.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
43.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
43.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
43.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
42.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
42.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
41.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
41.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
40.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
40.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
40.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
40.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
40.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
39.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
39.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
39.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
39.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
38.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
37.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
37.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
37.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
37.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
35.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
34.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
34.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
33.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
33.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
33.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
33.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
32.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
32.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
32.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
31.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
31.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
31.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
31.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
31.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
30.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
30.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
29.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
29.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
29.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
28.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
28.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
28.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
28.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
28.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
28.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
28.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
28.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
28.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
28.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
27.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
27.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
27.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
27.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
27.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
27.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
27.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
26.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
26.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
26.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
26.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
26.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
26.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
26.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
26.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
26.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
26.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
25.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
25.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
25.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
25.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
25.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
24.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
24.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
24.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
24.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
24.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
24.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
24.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
24.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
23.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
23.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
23.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
23.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
23.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
23.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
23.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
23.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
23.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
23.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
22.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
22.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
22.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
22.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
22.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
22.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
22.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
22.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
21.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
21.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
21.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
21.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
21.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
21.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
21.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
21.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
21.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
20.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
20.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
20.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
20.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
20.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
20.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
20.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
20.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
19.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
19.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
19.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
19.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
19.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
19.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
19.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
19.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
19.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
18.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
18.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
18.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
18.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
18.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
18.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
18.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
18.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
18.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
18.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
18.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
18.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
18.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
17.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
17.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
17.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
17.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
17.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
17.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
17.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
17.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
17.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
17.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
17.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
17.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
16.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
16.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
16.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
16.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
16.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
16.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
16.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
16.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
16.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
16.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
16.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
16.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
16.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
16.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
15.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
15.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
15.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
15.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
15.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
15.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
15.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
15.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
15.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
15.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
15.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
15.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
14.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
14.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
14.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
14.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
14.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
14.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
14.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
14.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
14.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
14.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
14.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
14.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
14.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
14.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
14.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
13.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
13.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
13.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
13.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
13.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
13.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
13.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
13.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
13.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
13.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
12.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
12.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
12.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
12.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
12.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
12.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
12.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
11.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
11.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
10.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
10.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
10.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
10.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
10.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
10.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
9.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
8.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
8.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
6.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
6.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ADAM15 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.8
Number of samples
231
Samples
Sample
Description
TPM
DO45275
0 years, male, NA, stage:3, dead, 10 days
127.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
107.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
79.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
79.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
73.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
73.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
72.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
72.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
69.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
66.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
66.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
66.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
65.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
64.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
62.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
60.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
58.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
56.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
55.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
52.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
52.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
51.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
51.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
51.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
50.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
50.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
50.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
49.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
47.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
43.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
43.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
43.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
43.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
42.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
42.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
42.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
42.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
41.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
41.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
41.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
39.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
39.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
39.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
38.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
36.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
36.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
36.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
36.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
36.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
36.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
35.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
35.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
34.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
34.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
33.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
33.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
33.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
32.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
32.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
32.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
31.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
31.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
31.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
31.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
31.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
29.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
29.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
29.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
29.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
28.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
28.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
27.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
27.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
27.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
27.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
26.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
26.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
26.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
26.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
26.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
26.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
25.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
25.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
25.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
25.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
25.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
25.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
24.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
24.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
23.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
23.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
23.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
23.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
22.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
22.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
22.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
22.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
22.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
22.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
22.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
22.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
21.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
21.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
21.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
21.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
21.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
21.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
21.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
21.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
20.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
20.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
20.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
20.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
20.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
20.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
20.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
20.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
20.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
20.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
20.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
20.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
20.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
19.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
19.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
19.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
19.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
19.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
19.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
19.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
18.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
18.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
18.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
18.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
18.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
18.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
18.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
18.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
18.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
18.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
17.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
17.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
17.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
17.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
17.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
17.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
16.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
16.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
16.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
16.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
16.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
16.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
15.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
15.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
15.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
15.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
15.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
15.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
14.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
14.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
14.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
14.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
14.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
14.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
14.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
14.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
13.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
13.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
13.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
13.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
13.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
13.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
12.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
12.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
12.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
12.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
11.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
11.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
11.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
11.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
11.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
10.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
10.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
9.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
8.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
6.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
4.6
1042
Normal
4.6
1031
Tumor
4.5
1028
Normal
4.5
1026
Normal
4.4
427
Tumor
1.5
497
Tumor
1.4
527
Tumor
1.4
383
Tumor
1.2
487
Tumor
1.1
357
Tumor
1.1
663
Tumor
1.1
231
Tumor
1.0
393
Tumor
1.0
387
Tumor
0.9
257
Tumor
0.9
814
Normal
0.9
813
Tumor
0.8
615
Tumor
0.8
415
Tumor
0.8
191
Tumor
0.8
343
Tumor
0.8
697
Tumor
0.8
445
Tumor
0.7
925
Tumor
0.7
977
Tumor
0.7
213
Tumor
0.7
647
Tumor
0.6
271
Tumor
0.6
355
Tumor
0.6
461
Tumor
0.6
473
Tumor
0.6
132
Normal
0.6
525
Tumor
0.6
477
Tumor
0.6
267
Tumor
0.6
136
Normal
0.6
617
Tumor
0.6
567
Tumor
0.6
1013
Tumor
0.5
865
Tumor
0.5
211
Tumor
0.5
361
Tumor
0.5
627
Tumor
0.5
727
Tumor
0.5
411
Tumor
0.5
553
Tumor
0.4
146
Normal
0.4
142
Normal
0.4
523
Tumor
0.4
192
Normal
0.4
332
Normal
0.4
471
Tumor
0.4
573
Tumor
0.4
395
Tumor
0.4
314
Normal
0.4
363
Tumor
0.4
493
Tumor
0.4
737
Tumor
0.4
641
Tumor
0.4
557
Tumor
0.4
943
Tumor
0.3
881
Tumor
0.3
431
Tumor
0.3
327
Tumor
0.3
451
Tumor
0.3
923
Tumor
0.3
721
Tumor
0.3
913
Tumor
0.3
1041
Tumor
0.3
455
Tumor
0.3
195
Tumor
0.3
536
Normal
0.3
138
Normal
0.3
515
Tumor
0.2
533
Tumor
0.2
745
Tumor
0.2
261
Tumor
0.2
298
Normal
0.2
491
Tumor
0.2
467
Tumor
0.2
483
Tumor
0.2
435
Tumor
0.2
915
Tumor
0.2
161
Tumor
0.2
313
Tumor
0.2
513
Tumor
0.2
823
Tumor
0.2
722
Normal
0.2
227
Tumor
0.2
351
Tumor
0.1
272
Normal
0.1
278
Normal
0.1
628
Normal
0.1
755
Tumor
0.1
857
Tumor
0.1
818
Normal
0.1
472
Normal
0.1
283
Tumor
0.1
448
Normal
0.1
224
Normal
0.1
1021
Tumor
0.1
147
Tumor
0.1
135
Tumor
0.1
671
Tumor
0.1
375
Tumor
0.1
463
Tumor
0.1
1025
Tumor
0.1
465
Tumor
0.1
447
Tumor
0.1
713
Tumor
0.1
911
Tumor
0.1
861
Tumor
0.1
937
Tumor
0.1
474
Normal
0.1
137
Tumor
0.1
672
Normal
0.1
1045
Tumor
0.1
685
Tumor
0.1
284
Normal
0.0
365
Tumor
0.0
817
Tumor
0.0
563
Tumor
0.0
873
Tumor
0.0
516
Normal
0.0
635
Tumor
0.0
433
Tumor
0.0
777
Tumor
0.0
724
Normal
0.0
498
Normal
0.0
863
Tumor
0.0
384
Normal
0.0
423
Tumor
0.0
145
Tumor
0.0
212
Normal
0.0
141
Tumor
0.0
187
Tumor
0.0
286
Normal
0.0
223
Tumor
0.0
883
Tumor
0.0
618
Normal
0.0
468
Normal
0.0
217
Tumor
0.0
1044
Normal
0.0
297
Tumor
0.0
953
Tumor
0.0
436
Normal
0.0
311
Tumor
0.0
534
Normal
0.0
528
Normal
0.0
111
Normal
0.0
1015
Tumor
0.0
574
Normal
0.0
482
Normal
0.0
162
Normal
0.0
396
Normal
0.0
526
Normal
0.0
368
Normal
0.0
957
Tumor
0.0
391
Tumor
-0.1
1032
Normal
-0.1
514
Normal
-0.1
698
Normal
-0.1
185
Tumor
-0.1
488
Normal
-0.1
366
Normal
-0.1
421
Tumor
-0.1
386
Normal
-0.1
571
Tumor
-0.1
228
Normal
-0.1
394
Normal
-0.1
413
Tumor
-0.1
425
Tumor
-0.1
148
Normal
-0.1
944
Normal
-0.1
312
Normal
-0.1
172
Normal
-0.1
492
Normal
-0.1
716
Normal
-0.1
867
Tumor
-0.1
125
Tumor
-0.1
392
Normal
-0.1
434
Normal
-0.1
188
Normal
-0.1
464
Normal
-0.1
1046
Normal
-0.1
785
Tumor
-0.1
728
Normal
-0.1
884
Normal
-0.1
128
Normal
-0.1
642
Normal
-0.1
388
Normal
-0.1
262
Normal
-0.1
186
Normal
-0.1
1043
Tumor
-0.1
742
Normal
-0.1
546
Normal
-0.1
221
Tumor
-0.1
568
Normal
-0.1
277
Tumor
-0.1
636
Normal
-0.1
524
Normal
-0.1
537
Tumor
-0.1
114
Normal
-0.1
385
Tumor
-0.1
484
Normal
-0.1
113
Tumor
-0.1
756
Normal
-0.2
376
Normal
-0.2
975
Tumor
-0.2
816
Normal
-0.2
341
Tumor
-0.2
331
Tumor
-0.2
518
Normal
-0.2
778
Normal
-0.2
443
Tumor
-0.2
917
Tumor
-0.2
914
Normal
-0.2
738
Normal
-0.2
662
Normal
-0.2
564
Normal
-0.2
862
Normal
-0.2
868
Normal
-0.2
686
Normal
-0.2
661
Tumor
-0.2
124
Normal
-0.2
268
Normal
-0.2
127
Tumor
-0.2
786
Normal
-0.2
938
Normal
-0.2
218
Normal
-0.2
882
Normal
-0.2
494
Normal
-0.2
965
Tumor
-0.2
824
Normal
-0.2
367
Tumor
-0.2
741
Tumor
-0.2
743
Tumor
-0.2
362
Normal
-0.2
963
Tumor
-0.2
912
Normal
-0.2
864
Normal
-0.2
554
Normal
-0.2
538
Normal
-0.2
1022
Normal
-0.2
696
Normal
-0.2
412
Normal
-0.2
714
Normal
-0.2
456
Normal
-0.2
481
Tumor
-0.2
258
Normal
-0.3
715
Tumor
-0.3
428
Normal
-0.3
545
Tumor
-0.3
214
Normal
-0.3
952
Normal
-0.3
344
Normal
-0.3
196
Normal
-0.3
866
Normal
-0.3
746
Normal
-0.3
616
Normal
-0.3
353
Tumor
-0.3
852
Normal
-0.3
744
Normal
-0.3
983
Tumor
-0.3
414
Normal
-0.3
452
Normal
-0.3
462
Normal
-0.3
285
Tumor
-0.3
444
Normal
-0.3
878
Normal
-0.3
956
Normal
-0.3
424
Normal
-0.3
478
Normal
-0.3
358
Normal
-0.3
123
Tumor
-0.3
426
Normal
-0.3
112
Tumor
-0.3
232
Normal
-0.3
648
Normal
-0.3
874
Normal
-0.3
981
Tumor
-0.3
666
Normal
-0.3
954
Normal
-0.4
951
Tumor
-0.4
558
Normal
-0.4
921
Tumor
-0.4
446
Normal
-0.4
222
Normal
-0.4
665
Tumor
-0.4
126
Normal
-0.4
955
Tumor
-0.4
572
Normal
-0.4
171
Tumor
-0.4
664
Normal
-0.4
466
Normal
-0.4
858
Normal
-0.4
328
Normal
-0.4
364
Normal
-0.4
851
Tumor
-0.4
517
Tumor
-0.4
354
Normal
-0.4
352
Normal
-0.4
422
Normal
-0.4
342
Normal
-0.5
416
Normal
-0.5
723
Tumor
-0.5
695
Tumor
-0.5
966
Normal
-0.5
131
Tumor
-0.5
982
Normal
-0.5
535
Tumor
-0.6
356
Normal
-0.6
432
Normal
-0.6
1016
Normal
-0.6
967
Tumor
-0.6
815
Tumor
-0.7
964
Normal
-0.7
924
Normal
-0.7
958
Normal
-0.7
976
Normal
-0.8
968
Normal
-0.8
877
Tumor
-0.8
1014
Normal
-0.8
984
Normal
-0.8
926
Normal
-0.9
978
Normal
-1.0
922
Normal
-1.1
918
Normal
-1.2
916
Normal
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
