We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SMYD2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
29.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
182.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
153.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
141.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
118.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
116.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
116.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
106.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
105.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
104.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
97.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
96.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
96.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
92.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
91.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
91.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
89.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
86.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
85.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
79.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
78.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
77.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
77.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
76.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
74.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
70.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
70.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
69.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
69.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
68.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
68.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
67.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
67.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
67.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
66.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
65.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
65.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
65.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
65.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
64.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
63.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
61.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
59.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
58.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
58.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
55.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
53.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
52.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
52.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
52.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
51.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
51.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
49.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
49.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
47.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
46.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
46.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
46.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
46.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
44.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
44.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
43.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
42.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
42.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
41.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
41.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
41.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
41.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
41.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
40.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
40.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
40.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
40.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
40.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
39.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
39.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
38.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
37.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
37.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
37.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
36.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
36.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
36.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
36.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
35.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
35.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
35.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
35.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
35.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
35.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
34.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
34.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
34.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
34.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
34.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
33.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
33.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
32.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
32.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
32.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
32.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
31.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
31.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
31.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
31.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
31.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
31.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
31.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
30.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
30.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
30.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
30.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
30.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
30.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
30.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
30.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
30.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
29.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
29.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
29.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
29.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
29.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
29.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
29.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
28.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
28.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
28.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
28.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
27.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
27.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
27.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
27.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
27.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
27.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
26.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
26.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
26.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
26.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
26.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
26.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
26.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
25.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
25.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
25.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
25.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
25.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
25.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
25.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
24.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
24.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
24.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
24.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
24.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
24.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
24.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
24.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
23.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
23.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
23.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
23.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
23.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
23.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
23.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
23.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
23.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
22.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
22.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
22.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
22.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
22.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
22.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
22.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
22.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
22.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
22.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
22.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
22.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
21.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
21.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
21.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
21.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
21.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
21.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
21.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
21.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
21.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
21.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
21.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
20.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
20.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
20.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
20.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
20.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
20.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
20.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
20.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
20.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
20.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
20.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
19.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
19.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
19.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
19.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
19.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
19.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
19.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
19.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
19.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
19.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
19.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
19.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
19.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
19.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
19.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
18.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
18.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
18.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
18.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
18.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
18.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
18.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
18.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
18.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
18.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
18.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
18.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
18.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
18.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
18.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
17.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
17.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
17.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
17.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
17.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
17.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
17.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
17.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
17.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
17.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
17.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
17.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
17.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
16.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
16.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
16.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
16.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
16.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
16.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
16.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
16.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
16.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
15.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
15.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
15.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
15.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
15.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
15.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
15.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
15.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
15.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
14.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
14.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
14.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
14.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
13.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
13.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
13.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
13.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
13.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
13.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
13.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
13.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
13.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
12.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
12.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
12.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
12.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
12.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
12.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
12.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
11.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
11.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
11.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
10.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
10.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
10.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
9.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
9.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
7.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
6.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SMYD2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
45.3
Number of samples
231
Samples
Sample
Description
TPM
DO50783
0 years, male, NA, stage:3, alive, 480 days
252.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
191.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
183.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
174.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
161.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
153.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
152.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
129.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
125.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
123.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
122.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
112.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
110.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
108.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
108.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
106.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
106.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
103.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
103.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
102.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
96.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
94.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
91.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
89.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
86.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
85.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
85.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
84.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
82.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
81.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
81.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
79.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
77.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
74.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
74.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
73.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
67.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
66.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
63.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
63.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
63.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
62.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
62.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
62.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
62.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
61.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
61.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
61.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
59.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
58.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
57.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
57.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
57.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
57.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
56.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
56.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
55.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
54.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
54.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
53.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
51.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
51.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
50.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
50.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
49.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
48.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
48.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
48.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
48.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
46.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
46.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
45.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
45.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
45.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
44.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
44.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
44.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
44.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
43.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
42.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
42.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
41.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
41.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
41.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
41.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
41.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
40.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
40.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
40.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
39.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
39.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
39.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
38.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
38.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
38.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
37.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
37.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
36.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
36.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
36.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
36.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
36.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
36.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
36.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
36.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
36.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
36.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
36.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
34.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
34.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
34.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
33.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
33.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
33.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
33.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
32.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
32.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
32.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
32.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
32.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
32.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
32.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
31.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
31.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
31.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
31.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
31.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
31.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
31.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
31.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
31.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
30.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
30.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
30.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
30.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
30.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
30.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
29.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
29.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
29.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
29.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
29.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
29.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
29.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
29.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
28.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
28.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
28.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
28.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
28.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
27.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
27.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
27.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
27.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
27.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
26.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
26.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
26.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
26.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
26.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
26.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
26.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
26.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
25.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
25.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
25.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
25.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
25.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
25.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
24.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
24.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
24.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
24.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
24.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
24.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
23.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
23.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
23.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
23.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
23.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
22.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
22.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
22.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
22.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
22.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
22.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
21.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
21.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
20.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
20.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
20.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
20.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
20.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
20.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
19.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
19.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
19.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
19.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
19.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
18.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
18.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
18.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
18.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
17.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
17.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
17.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
17.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
17.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
17.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
17.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
16.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
16.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
16.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
15.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
15.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
14.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
14.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
14.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
14.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
13.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
13.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
13.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
12.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
12.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
211
Tumor
2.3
685
Tumor
2.2
715
Tumor
1.8
1041
Tumor
1.6
557
Tumor
1.5
977
Tumor
1.5
451
Tumor
1.5
965
Tumor
1.4
553
Tumor
1.3
911
Tumor
1.3
147
Tumor
1.3
915
Tumor
1.3
1027
Tumor
1.3
131
Tumor
1.2
171
Tumor
1.2
921
Tumor
1.2
724
Normal
1.2
473
Tumor
1.1
665
Tumor
1.0
877
Tumor
1.0
533
Tumor
1.0
493
Tumor
0.9
123
Tumor
0.9
975
Tumor
0.9
1031
Tumor
0.9
865
Tumor
0.9
861
Tumor
0.9
867
Tumor
0.9
231
Tumor
0.8
925
Tumor
0.8
351
Tumor
0.8
777
Tumor
0.8
483
Tumor
0.8
743
Tumor
0.8
957
Tumor
0.7
461
Tumor
0.7
527
Tumor
0.7
471
Tumor
0.6
737
Tumor
0.6
641
Tumor
0.6
271
Tumor
0.6
513
Tumor
0.6
221
Tumor
0.6
567
Tumor
0.6
951
Tumor
0.6
881
Tumor
0.6
857
Tumor
0.6
127
Tumor
0.6
517
Tumor
0.6
1013
Tumor
0.6
661
Tumor
0.5
327
Tumor
0.5
741
Tumor
0.5
375
Tumor
0.5
283
Tumor
0.5
191
Tumor
0.5
1021
Tumor
0.4
387
Tumor
0.4
447
Tumor
0.4
573
Tumor
0.4
745
Tumor
0.4
863
Tumor
0.4
963
Tumor
0.4
537
Tumor
0.3
525
Tumor
0.3
515
Tumor
0.3
1015
Tumor
0.3
913
Tumor
0.3
285
Tumor
0.3
213
Tumor
0.3
635
Tumor
0.3
917
Tumor
0.3
943
Tumor
0.3
477
Tumor
0.2
185
Tumor
0.2
463
Tumor
0.2
257
Tumor
0.2
817
Tumor
0.2
1025
Tumor
0.2
981
Tumor
0.2
297
Tumor
0.2
563
Tumor
0.2
393
Tumor
0.2
873
Tumor
0.1
357
Tumor
0.1
823
Tumor
0.1
261
Tumor
0.1
268
Normal
0.1
523
Tumor
0.1
391
Tumor
0.1
1043
Tumor
0.1
574
Normal
0.1
135
Tumor
0.1
616
Normal
0.1
313
Tumor
0.1
916
Normal
0.1
415
Tumor
0.1
443
Tumor
0.1
362
Normal
0.1
427
Tumor
0.1
918
Normal
0.1
145
Tumor
0.0
343
Tumor
0.0
572
Normal
0.0
195
Tumor
0.0
953
Tumor
0.0
568
Normal
0.0
341
Tumor
0.0
465
Tumor
0.0
481
Tumor
0.0
571
Tumor
0.0
545
Tumor
0.0
425
Tumor
0.0
128
Normal
0.0
433
Tumor
0.0
187
Tumor
0.0
514
Normal
0.0
697
Tumor
0.0
564
Normal
0.0
671
Tumor
0.0
136
Normal
0.0
883
Tumor
0.0
924
Normal
0.0
212
Normal
0.0
983
Tumor
0.0
113
Tumor
0.0
395
Tumor
0.0
647
Tumor
0.0
196
Normal
0.0
464
Normal
-0.1
538
Normal
-0.1
868
Normal
-0.1
411
Tumor
-0.1
627
Tumor
-0.1
272
Normal
-0.1
1042
Normal
-0.1
1032
Normal
-0.1
466
Normal
-0.1
188
Normal
-0.1
125
Tumor
-0.1
137
Tumor
-0.1
967
Tumor
-0.1
944
Normal
-0.1
714
Normal
-0.1
416
Normal
-0.1
978
Normal
-0.1
516
Normal
-0.1
958
Normal
-0.1
474
Normal
-0.1
866
Normal
-0.1
663
Tumor
-0.1
728
Normal
-0.1
862
Normal
-0.1
746
Normal
-0.1
132
Normal
-0.1
636
Normal
-0.1
267
Tumor
-0.1
366
Normal
-0.1
258
Normal
-0.1
976
Normal
-0.1
284
Normal
-0.1
328
Normal
-0.1
852
Normal
-0.1
664
Normal
-0.1
1014
Normal
-0.1
217
Tumor
-0.1
232
Normal
-0.1
262
Normal
-0.1
617
Tumor
-0.2
455
Tumor
-0.2
618
Normal
-0.2
1046
Normal
-0.2
228
Normal
-0.2
922
Normal
-0.2
952
Normal
-0.2
1028
Normal
-0.2
642
Normal
-0.2
526
Normal
-0.2
448
Normal
-0.2
444
Normal
-0.2
413
Tumor
-0.2
824
Normal
-0.2
914
Normal
-0.2
874
Normal
-0.2
864
Normal
-0.2
312
Normal
-0.2
497
Tumor
-0.2
722
Normal
-0.2
558
Normal
-0.2
738
Normal
-0.2
786
Normal
-0.2
186
Normal
-0.2
148
Normal
-0.2
785
Tumor
-0.2
468
Normal
-0.2
192
Normal
-0.2
162
Normal
-0.2
956
Normal
-0.2
955
Tumor
-0.2
222
Normal
-0.2
376
Normal
-0.2
494
Normal
-0.2
423
Tumor
-0.2
224
Normal
-0.2
138
Normal
-0.2
412
Normal
-0.2
428
Normal
-0.2
456
Normal
-0.2
436
Normal
-0.2
472
Normal
-0.2
696
Normal
-0.2
518
Normal
-0.2
524
Normal
-0.2
968
Normal
-0.2
648
Normal
-0.2
361
Tumor
-0.2
982
Normal
-0.2
615
Tumor
-0.2
172
Normal
-0.2
1022
Normal
-0.2
214
Normal
-0.2
435
Tumor
-0.2
938
Normal
-0.3
112
Tumor
-0.3
278
Normal
-0.3
421
Tumor
-0.3
498
Normal
-0.3
1016
Normal
-0.3
286
Normal
-0.3
356
Normal
-0.3
422
Normal
-0.3
818
Normal
-0.3
482
Normal
-0.3
535
Tumor
-0.3
628
Normal
-0.3
713
Tumor
-0.3
723
Tumor
-0.3
478
Normal
-0.3
858
Normal
-0.3
698
Normal
-0.3
742
Normal
-0.3
446
Normal
-0.3
964
Normal
-0.3
662
Normal
-0.3
223
Tumor
-0.3
384
Normal
-0.3
536
Normal
-0.3
218
Normal
-0.3
1026
Normal
-0.3
146
Normal
-0.3
926
Normal
-0.3
424
Normal
-0.3
124
Normal
-0.3
954
Normal
-0.3
1045
Tumor
-0.3
966
Normal
-0.3
851
Tumor
-0.3
363
Tumor
-0.3
755
Tumor
-0.3
114
Normal
-0.3
778
Normal
-0.3
756
Normal
-0.3
984
Normal
-0.3
161
Tumor
-0.3
666
Normal
-0.3
484
Normal
-0.3
388
Normal
-0.3
331
Tumor
-0.4
491
Tumor
-0.4
452
Normal
-0.4
546
Normal
-0.4
528
Normal
-0.4
492
Normal
-0.4
744
Normal
-0.4
884
Normal
-0.4
426
Normal
-0.4
878
Normal
-0.4
923
Tumor
-0.4
554
Normal
-0.4
111
Normal
-0.4
368
Normal
-0.4
142
Normal
-0.4
385
Tumor
-0.4
311
Tumor
-0.4
686
Normal
-0.4
396
Normal
-0.4
364
Normal
-0.4
342
Normal
-0.4
534
Normal
-0.4
882
Normal
-0.4
365
Tumor
-0.4
462
Normal
-0.4
227
Tumor
-0.4
432
Normal
-0.4
716
Normal
-0.4
488
Normal
-0.4
141
Tumor
-0.5
298
Normal
-0.5
727
Tumor
-0.5
912
Normal
-0.5
1044
Normal
-0.5
814
Normal
-0.5
352
Normal
-0.5
392
Normal
-0.5
434
Normal
-0.5
314
Normal
-0.5
126
Normal
-0.5
445
Tumor
-0.5
355
Tumor
-0.5
367
Tumor
-0.5
816
Normal
-0.5
467
Tumor
-0.6
358
Normal
-0.6
394
Normal
-0.6
721
Tumor
-0.7
813
Tumor
-0.7
414
Normal
-0.7
815
Tumor
-0.7
344
Normal
-0.7
386
Normal
-0.7
354
Normal
-0.7
695
Tumor
-0.7
672
Normal
-0.7
332
Normal
-0.7
383
Tumor
-0.8
487
Tumor
-0.8
353
Tumor
-0.8
431
Tumor
-0.9
937
Tumor
-0.9
277
Tumor
-1.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
