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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
POGZ is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
66.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
61.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
53.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
46.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
44.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
41.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
37.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
36.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
35.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
35.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
32.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
31.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
31.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
30.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
30.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
29.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
28.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
26.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
26.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
25.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
24.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
24.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
24.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
23.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
23.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
23.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
23.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
23.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
22.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
22.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
21.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
21.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
21.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
21.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
21.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
21.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
20.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
20.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
19.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
19.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
19.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
19.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
19.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
19.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
19.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
18.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
18.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
18.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
18.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
18.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
17.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
17.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
17.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
17.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
17.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
17.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
17.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
16.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
16.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
16.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
16.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
16.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
16.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
16.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
16.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
15.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
15.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
15.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
15.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
15.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
15.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
15.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
15.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
15.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
15.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
15.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
15.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
15.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
15.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
15.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
14.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
14.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
14.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
14.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
14.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
14.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
14.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
14.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
14.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
13.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
13.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
13.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
13.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
13.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
13.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
13.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
13.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
13.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
12.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
12.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
12.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
12.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
12.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
12.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
12.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
11.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
11.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
11.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
11.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
11.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
11.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
11.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
10.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
10.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
10.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
10.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
10.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
10.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
9.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
9.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
9.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
9.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
9.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
9.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
8.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
8.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
8.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
8.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
8.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
7.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
7.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
5.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
POGZ is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.6
Number of samples
231
Samples
Sample
Description
TPM
DO48732
0 years, male, NA, stage:3, alive, 630 days
91.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
76.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
68.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
68.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
65.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
62.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
61.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
58.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
57.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
54.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
52.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
51.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
50.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
49.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
49.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
48.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
48.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
47.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
46.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
45.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
45.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
44.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
44.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
44.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
42.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
42.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
42.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
41.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
40.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
40.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
40.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
39.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
39.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
38.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
38.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
37.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
35.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
35.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
35.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
34.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
33.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
33.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
33.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
33.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
32.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
31.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
31.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
30.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
30.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
30.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
29.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
29.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
29.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
29.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
28.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
28.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
28.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
27.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
27.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
27.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
27.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
27.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
26.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
26.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
26.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
26.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
25.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
25.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
25.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
25.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
25.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
25.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
25.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
24.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
24.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
24.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
24.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
24.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
24.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
24.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
24.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
23.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
23.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
23.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
23.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
23.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
23.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
23.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
22.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
22.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
22.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
22.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
22.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
22.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
22.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
22.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
21.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
21.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
21.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
21.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
21.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
21.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
21.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
21.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
21.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
21.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
21.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
20.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
20.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
20.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
20.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
20.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
20.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
20.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
20.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
20.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
19.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
19.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
19.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
19.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
19.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
19.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
19.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
19.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
19.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
19.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
18.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
18.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
18.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
18.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
18.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
18.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
18.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
18.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
18.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
18.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
18.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
17.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
17.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
17.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
17.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
17.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
17.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
16.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
16.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
16.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
16.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
16.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
16.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
16.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
16.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
16.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
16.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
16.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
15.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
15.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
15.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
15.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
15.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
15.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
15.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
15.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
15.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
14.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
14.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
14.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
14.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
14.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
14.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
14.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
14.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
14.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
13.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
13.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
13.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
13.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
13.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
13.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
13.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
12.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
11.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
11.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
10.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
10.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
10.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
10.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
9.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
9.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
131
Tumor
1.3
695
Tumor
1.2
743
Tumor
1.2
497
Tumor
1.0
425
Tumor
1.0
545
Tumor
1.0
431
Tumor
1.0
161
Tumor
0.9
473
Tumor
0.9
965
Tumor
0.8
877
Tumor
0.8
865
Tumor
0.8
351
Tumor
0.8
357
Tumor
0.8
977
Tumor
0.7
1021
Tumor
0.7
331
Tumor
0.7
463
Tumor
0.7
313
Tumor
0.7
737
Tumor
0.7
445
Tumor
0.7
487
Tumor
0.7
957
Tumor
0.7
211
Tumor
0.7
411
Tumor
0.7
951
Tumor
0.6
647
Tumor
0.6
1031
Tumor
0.6
813
Tumor
0.6
663
Tumor
0.6
385
Tumor
0.6
523
Tumor
0.6
881
Tumor
0.6
975
Tumor
0.6
427
Tumor
0.6
921
Tumor
0.6
271
Tumor
0.5
277
Tumor
0.5
567
Tumor
0.5
297
Tumor
0.5
661
Tumor
0.5
123
Tumor
0.5
671
Tumor
0.4
135
Tumor
0.4
817
Tumor
0.4
983
Tumor
0.4
1025
Tumor
0.4
777
Tumor
0.4
343
Tumor
0.4
383
Tumor
0.4
435
Tumor
0.4
814
Normal
0.4
525
Tumor
0.4
1013
Tumor
0.4
553
Tumor
0.3
447
Tumor
0.3
355
Tumor
0.3
471
Tumor
0.3
537
Tumor
0.3
527
Tumor
0.3
141
Tumor
0.3
125
Tumor
0.3
185
Tumor
0.3
715
Tumor
0.3
665
Tumor
0.3
491
Tumor
0.3
413
Tumor
0.3
571
Tumor
0.3
641
Tumor
0.3
943
Tumor
0.3
375
Tumor
0.3
727
Tumor
0.3
455
Tumor
0.3
923
Tumor
0.3
517
Tumor
0.3
1043
Tumor
0.3
393
Tumor
0.3
213
Tumor
0.3
953
Tumor
0.3
367
Tumor
0.2
227
Tumor
0.2
483
Tumor
0.2
433
Tumor
0.2
535
Tumor
0.2
533
Tumor
0.2
112
Tumor
0.2
283
Tumor
0.2
917
Tumor
0.2
285
Tumor
0.2
573
Tumor
0.2
221
Tumor
0.2
387
Tumor
0.2
724
Normal
0.2
467
Tumor
0.2
391
Tumor
0.1
515
Tumor
0.1
963
Tumor
0.1
461
Tumor
0.1
147
Tumor
0.1
423
Tumor
0.1
451
Tumor
0.1
477
Tumor
0.1
815
Tumor
0.1
823
Tumor
0.1
267
Tumor
0.1
913
Tumor
0.1
231
Tumor
0.1
883
Tumor
0.1
443
Tumor
0.1
465
Tumor
0.1
741
Tumor
0.1
361
Tumor
0.0
873
Tumor
0.0
493
Tumor
0.0
127
Tumor
0.0
697
Tumor
0.0
721
Tumor
0.0
967
Tumor
0.0
863
Tumor
0.0
341
Tumor
0.0
685
Tumor
0.0
217
Tumor
0.0
192
Normal
0.0
1041
Tumor
0.0
415
Tumor
0.0
478
Normal
0.0
363
Tumor
0.0
713
Tumor
0.0
171
Tumor
-0.1
563
Tumor
-0.1
857
Tumor
-0.1
298
Normal
-0.1
257
Tumor
-0.1
356
Normal
-0.1
421
Tumor
-0.1
311
Tumor
-0.1
224
Normal
-0.1
911
Tumor
-0.1
481
Tumor
-0.1
146
Normal
-0.1
861
Tumor
-0.1
785
Tumor
-0.1
191
Tumor
-0.1
444
Normal
-0.1
915
Tumor
-0.1
364
Normal
-0.1
744
Normal
-0.1
498
Normal
-0.1
492
Normal
-0.1
538
Normal
-0.1
742
Normal
-0.2
113
Tumor
-0.2
867
Tumor
-0.2
472
Normal
-0.2
312
Normal
-0.2
484
Normal
-0.2
534
Normal
-0.2
1016
Normal
-0.2
528
Normal
-0.2
132
Normal
-0.2
142
Normal
-0.2
488
Normal
-0.2
554
Normal
-0.2
314
Normal
-0.2
388
Normal
-0.2
635
Tumor
-0.2
964
Normal
-0.2
187
Tumor
-0.2
494
Normal
-0.2
434
Normal
-0.2
284
Normal
-0.2
976
Normal
-0.2
738
Normal
-0.2
858
Normal
-0.2
456
Normal
-0.2
332
Normal
-0.2
1014
Normal
-0.2
818
Normal
-0.2
728
Normal
-0.2
278
Normal
-0.2
966
Normal
-0.2
464
Normal
-0.2
574
Normal
-0.2
524
Normal
-0.2
344
Normal
-0.2
114
Normal
-0.2
516
Normal
-0.2
268
Normal
-0.2
386
Normal
-0.2
824
Normal
-0.2
394
Normal
-0.2
261
Tumor
-0.2
851
Tumor
-0.2
223
Tumor
-0.2
672
Normal
-0.2
984
Normal
-0.2
982
Normal
-0.2
745
Tumor
-0.2
546
Normal
-0.2
513
Tumor
-0.2
722
Normal
-0.2
1027
Tumor
-0.2
698
Normal
-0.2
195
Tumor
-0.2
617
Tumor
-0.2
137
Tumor
-0.2
914
Normal
-0.2
188
Normal
-0.2
412
Normal
-0.2
136
Normal
-0.2
466
Normal
-0.2
148
Normal
-0.2
1032
Normal
-0.3
352
Normal
-0.3
138
Normal
-0.3
342
Normal
-0.3
884
Normal
-0.3
878
Normal
-0.3
944
Normal
-0.3
392
Normal
-0.3
1015
Tumor
-0.3
328
Normal
-0.3
128
Normal
-0.3
396
Normal
-0.3
212
Normal
-0.3
686
Normal
-0.3
518
Normal
-0.3
228
Normal
-0.3
384
Normal
-0.3
124
Normal
-0.3
514
Normal
-0.3
474
Normal
-0.3
786
Normal
-0.3
952
Normal
-0.3
978
Normal
-0.3
778
Normal
-0.3
365
Tumor
-0.3
327
Tumor
-0.3
426
Normal
-0.3
756
Normal
-0.3
416
Normal
-0.3
446
Normal
-0.3
912
Normal
-0.3
968
Normal
-0.3
436
Normal
-0.3
354
Normal
-0.3
723
Tumor
-0.3
232
Normal
-0.3
482
Normal
-0.3
955
Tumor
-0.3
666
Normal
-0.3
852
Normal
-0.3
662
Normal
-0.3
186
Normal
-0.3
536
Normal
-0.3
462
Normal
-0.3
664
Normal
-0.3
428
Normal
-0.3
1044
Normal
-0.3
628
Normal
-0.3
126
Normal
-0.3
526
Normal
-0.3
432
Normal
-0.3
145
Tumor
-0.3
286
Normal
-0.3
956
Normal
-0.3
468
Normal
-0.3
424
Normal
-0.3
358
Normal
-0.3
214
Normal
-0.3
111
Normal
-0.3
218
Normal
-0.3
918
Normal
-0.3
162
Normal
-0.3
874
Normal
-0.3
648
Normal
-0.3
882
Normal
-0.3
696
Normal
-0.3
925
Tumor
-0.3
958
Normal
-0.3
272
Normal
-0.3
258
Normal
-0.3
1046
Normal
-0.3
1045
Tumor
-0.3
916
Normal
-0.3
924
Normal
-0.3
954
Normal
-0.4
922
Normal
-0.4
866
Normal
-0.4
937
Tumor
-0.4
196
Normal
-0.4
376
Normal
-0.4
816
Normal
-0.4
938
Normal
-0.4
452
Normal
-0.4
448
Normal
-0.4
558
Normal
-0.4
1042
Normal
-0.4
746
Normal
-0.4
714
Normal
-0.4
716
Normal
-0.4
1026
Normal
-0.4
564
Normal
-0.4
395
Tumor
-0.4
1028
Normal
-0.4
557
Tumor
-0.4
1022
Normal
-0.4
353
Tumor
-0.4
414
Normal
-0.4
926
Normal
-0.4
366
Normal
-0.4
362
Normal
-0.4
568
Normal
-0.4
755
Tumor
-0.4
422
Normal
-0.4
172
Normal
-0.4
642
Normal
-0.4
864
Normal
-0.4
222
Normal
-0.4
618
Normal
-0.4
572
Normal
-0.4
262
Normal
-0.4
616
Normal
-0.5
862
Normal
-0.5
368
Normal
-0.5
636
Normal
-0.5
627
Tumor
-0.5
868
Normal
-0.5
981
Tumor
-0.5
615
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
