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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MRPL9 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
40.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
255.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
187.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
115.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
113.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
101.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
101.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
100.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
96.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
92.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
91.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
91.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
89.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
85.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
85.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
84.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
84.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
84.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
83.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
83.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
82.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
81.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
79.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
78.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
78.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
77.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
77.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
75.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
74.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
73.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
71.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
70.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
70.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
69.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
67.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
67.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
66.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
66.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
65.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
64.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
64.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
63.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
63.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
63.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
63.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
63.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
62.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
60.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
60.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
60.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
58.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
58.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
58.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
58.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
57.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
57.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
57.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
56.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
56.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
56.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
56.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
56.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
55.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
55.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
55.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
55.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
55.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
55.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
55.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
55.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
54.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
54.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
54.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
54.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
54.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
54.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
53.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
53.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
53.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
53.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
52.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
52.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
52.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
52.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
50.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
50.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
50.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
50.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
50.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
50.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
50.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
50.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
49.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
49.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
49.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
49.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
49.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
49.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
49.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
49.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
49.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
49.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
48.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
48.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
48.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
48.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
48.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
48.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
48.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
47.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
47.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
47.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
47.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
47.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
47.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
46.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
46.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
46.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
46.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
46.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
45.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
45.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
45.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
45.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
45.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
45.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
44.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
44.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
44.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
43.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
43.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
42.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
42.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
42.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
41.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
41.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
41.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
41.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
41.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
40.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
40.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
40.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
40.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
40.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
40.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
40.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
39.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
39.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
39.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
39.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
39.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
39.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
39.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
39.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
38.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
38.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
38.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
38.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
38.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
38.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
38.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
38.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
38.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
38.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
38.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
38.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
37.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
37.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
37.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
37.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
37.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
37.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
37.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
36.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
36.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
36.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
36.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
36.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
36.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
36.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
35.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
35.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
35.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
35.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
35.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
35.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
35.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
34.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
34.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
34.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
34.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
34.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
34.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
34.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
34.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
34.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
33.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
33.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
33.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
33.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
32.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
32.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
32.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
32.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
32.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
32.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
32.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
32.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
32.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
32.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
32.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
32.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
32.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
32.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
31.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
31.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
31.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
31.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
31.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
31.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
31.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
31.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
31.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
30.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
30.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
30.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
30.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
30.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
30.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
29.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
29.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
29.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
29.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
29.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
29.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
29.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
29.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
29.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
29.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
29.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
29.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
29.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
29.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
29.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
29.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
29.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
29.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
28.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
28.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
28.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
28.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
28.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
28.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
28.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
28.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
28.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
28.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
27.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
27.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
27.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
27.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
27.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
27.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
27.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
27.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
27.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
26.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
26.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
26.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
26.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
26.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
26.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
26.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
25.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
25.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
25.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
25.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
25.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
25.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
25.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
25.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
25.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
24.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
24.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
24.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
24.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
24.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
24.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
24.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
23.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
23.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
23.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
23.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
23.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
23.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
23.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
23.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
23.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
22.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
22.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
22.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
21.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
21.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
21.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
21.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
21.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
20.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
20.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
20.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
20.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
20.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
20.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
20.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
19.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
19.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
19.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
19.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
19.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
19.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
19.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
18.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
18.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
18.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
17.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
17.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
17.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
17.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
17.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
16.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
16.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
15.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
15.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
15.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
15.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
15.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
14.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
14.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
14.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
13.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
13.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
12.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
12.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
12.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
11.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
11.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
10.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
9.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
7.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
7.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MRPL9 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
36.0
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
88.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
86.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
84.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
82.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
81.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
78.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
73.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
69.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
68.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
66.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
63.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
60.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
60.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
60.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
59.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
59.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
59.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
59.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
58.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
57.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
56.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
55.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
54.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
54.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
54.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
54.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
53.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
53.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
53.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
51.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
51.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
50.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
50.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
50.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
49.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
49.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
48.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
48.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
48.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
48.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
48.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
48.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
47.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
47.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
47.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
46.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
46.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
46.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
46.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
46.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
46.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
45.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
45.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
45.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
45.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
44.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
44.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
44.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
44.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
44.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
44.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
44.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
44.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
44.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
44.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
43.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
42.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
42.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
42.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
42.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
42.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
42.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
42.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
41.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
41.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
41.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
41.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
41.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
41.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
40.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
40.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
40.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
40.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
39.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
39.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
39.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
38.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
38.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
38.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
38.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
38.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
38.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
38.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
37.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
37.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
37.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
37.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
36.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
36.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
36.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
36.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
36.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
36.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
36.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
36.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
36.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
36.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
35.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
35.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
35.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
34.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
34.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
34.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
34.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
34.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
34.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
33.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
33.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
32.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
32.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
32.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
32.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
32.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
32.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
32.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
32.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
32.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
31.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
31.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
31.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
31.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
31.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
31.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
31.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
31.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
30.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
30.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
30.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
30.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
30.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
30.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
30.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
30.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
30.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
29.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
29.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
29.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
29.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
29.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
29.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
29.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
28.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
28.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
28.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
28.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
28.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
28.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
28.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
27.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
27.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
27.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
27.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
26.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
26.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
26.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
25.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
25.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
25.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
25.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
24.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
24.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
24.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
24.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
24.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
24.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
24.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
23.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
23.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
23.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
23.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
23.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
23.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
23.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
23.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
23.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
22.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
22.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
22.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
22.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
22.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
22.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
21.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
21.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
21.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
21.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
21.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
20.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
20.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
20.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
20.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
20.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
20.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
20.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
20.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
19.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
19.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
18.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
18.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
18.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
18.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
18.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
17.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
17.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
17.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
17.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
17.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
17.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
17.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
16.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
16.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
16.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
15.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
14.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
14.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
13.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
12.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1041
Tumor
1.3
865
Tumor
1.1
435
Tumor
1.0
361
Tumor
0.9
557
Tumor
0.8
227
Tumor
0.8
743
Tumor
0.8
473
Tumor
0.8
525
Tumor
0.7
911
Tumor
0.7
741
Tumor
0.7
665
Tumor
0.7
883
Tumor
0.7
393
Tumor
0.6
277
Tumor
0.6
231
Tumor
0.6
411
Tumor
0.6
267
Tumor
0.6
431
Tumor
0.6
123
Tumor
0.6
663
Tumor
0.6
685
Tumor
0.6
285
Tumor
0.6
467
Tumor
0.6
915
Tumor
0.6
367
Tumor
0.5
171
Tumor
0.5
351
Tumor
0.5
981
Tumor
0.5
427
Tumor
0.5
553
Tumor
0.5
967
Tumor
0.5
913
Tumor
0.5
533
Tumor
0.4
823
Tumor
0.4
951
Tumor
0.4
1021
Tumor
0.4
483
Tumor
0.4
957
Tumor
0.4
423
Tumor
0.4
1025
Tumor
0.4
537
Tumor
0.4
395
Tumor
0.4
353
Tumor
0.4
1013
Tumor
0.4
1043
Tumor
0.4
327
Tumor
0.4
641
Tumor
0.4
713
Tumor
0.4
221
Tumor
0.4
223
Tumor
0.4
451
Tumor
0.4
627
Tumor
0.4
571
Tumor
0.4
463
Tumor
0.3
357
Tumor
0.3
671
Tumor
0.3
965
Tumor
0.3
1031
Tumor
0.3
567
Tumor
0.3
851
Tumor
0.3
187
Tumor
0.3
145
Tumor
0.3
497
Tumor
0.3
491
Tumor
0.3
261
Tumor
0.3
363
Tumor
0.3
517
Tumor
0.3
195
Tumor
0.3
127
Tumor
0.3
937
Tumor
0.3
727
Tumor
0.3
722
Normal
0.3
482
Normal
0.2
331
Tumor
0.2
257
Tumor
0.2
724
Normal
0.2
745
Tumor
0.2
921
Tumor
0.2
785
Tumor
0.2
356
Normal
0.2
147
Tumor
0.2
375
Tumor
0.2
728
Normal
0.2
413
Tumor
0.2
341
Tumor
0.2
445
Tumor
0.2
481
Tumor
0.2
877
Tumor
0.2
477
Tumor
0.2
861
Tumor
0.2
715
Tumor
0.2
721
Tumor
0.2
446
Normal
0.2
635
Tumor
0.2
424
Normal
0.2
297
Tumor
0.2
523
Tumor
0.2
462
Normal
0.2
391
Tumor
0.2
977
Tumor
0.1
617
Tumor
0.1
983
Tumor
0.1
468
Normal
0.1
358
Normal
0.1
212
Normal
0.1
527
Tumor
0.1
493
Tumor
0.1
191
Tumor
0.1
786
Normal
0.1
428
Normal
0.1
271
Tumor
0.1
383
Tumor
0.1
272
Normal
0.1
647
Tumor
0.1
755
Tumor
0.1
432
Normal
0.1
444
Normal
0.1
414
Normal
0.1
113
Tumor
0.1
313
Tumor
0.1
213
Tumor
0.1
185
Tumor
0.1
211
Tumor
0.1
867
Tumor
0.1
355
Tumor
0.1
434
Normal
0.1
416
Normal
0.1
436
Normal
0.1
944
Normal
0.1
514
Normal
0.1
112
Tumor
0.1
422
Normal
0.1
815
Tumor
0.1
487
Tumor
0.1
777
Tumor
0.1
471
Tumor
0.1
564
Normal
0.1
916
Normal
0.1
284
Normal
0.1
573
Tumor
0.0
953
Tumor
0.0
697
Tumor
0.0
141
Tumor
0.0
756
Normal
0.0
443
Tumor
0.0
148
Normal
0.0
465
Tumor
0.0
455
Tumor
0.0
258
Normal
0.0
364
Normal
0.0
188
Normal
0.0
568
Normal
0.0
135
Tumor
0.0
464
Normal
0.0
963
Tumor
0.0
923
Tumor
0.0
387
Tumor
0.0
286
Normal
0.0
312
Normal
0.0
314
Normal
0.0
1032
Normal
0.0
365
Tumor
0.0
466
Normal
0.0
881
Tumor
0.0
172
Normal
0.0
914
Normal
0.0
572
Normal
0.0
817
Tumor
0.0
162
Normal
0.0
426
Normal
0.0
912
Normal
0.0
918
Normal
0.0
738
Normal
0.0
161
Tumor
0.0
456
Normal
0.0
698
Normal
0.0
362
Normal
0.0
278
Normal
0.0
385
Tumor
0.0
137
Tumor
0.0
664
Normal
0.0
535
Tumor
0.0
132
Normal
0.0
714
Normal
0.0
214
Normal
0.0
232
Normal
0.0
814
Normal
-0.1
642
Normal
-0.1
516
Normal
-0.1
328
Normal
-0.1
661
Tumor
-0.1
452
Normal
-0.1
384
Normal
-0.1
131
Tumor
-0.1
472
Normal
-0.1
376
Normal
-0.1
528
Normal
-0.1
196
Normal
-0.1
925
Tumor
-0.1
628
Normal
-0.1
716
Normal
-0.1
922
Normal
-0.1
696
Normal
-0.1
186
Normal
-0.1
526
Normal
-0.1
488
Normal
-0.1
447
Tumor
-0.1
574
Normal
-0.1
283
Tumor
-0.1
484
Normal
-0.1
824
Normal
-0.1
368
Normal
-0.1
1016
Normal
-0.1
412
Normal
-0.1
128
Normal
-0.1
857
Tumor
-0.1
955
Tumor
-0.1
421
Tumor
-0.1
433
Tumor
-0.1
666
Normal
-0.1
938
Normal
-0.1
858
Normal
-0.1
448
Normal
-0.1
366
Normal
-0.1
982
Normal
-0.1
415
Tumor
-0.1
311
Tumor
-0.1
396
Normal
-0.1
723
Tumor
-0.1
262
Normal
-0.1
268
Normal
-0.1
494
Normal
-0.1
394
Normal
-0.1
686
Normal
-0.1
695
Tumor
-0.1
742
Normal
-0.1
648
Normal
-0.1
474
Normal
-0.1
136
Normal
-0.2
222
Normal
-0.2
778
Normal
-0.2
228
Normal
-0.2
615
Tumor
-0.2
192
Normal
-0.2
1042
Normal
-0.2
1028
Normal
-0.2
388
Normal
-0.2
662
Normal
-0.2
618
Normal
-0.2
958
Normal
-0.2
616
Normal
-0.2
546
Normal
-0.2
864
Normal
-0.2
125
Tumor
-0.2
518
Normal
-0.2
1022
Normal
-0.2
818
Normal
-0.2
114
Normal
-0.2
1027
Tumor
-0.2
558
Normal
-0.2
352
Normal
-0.2
126
Normal
-0.2
332
Normal
-0.2
563
Tumor
-0.2
138
Normal
-0.2
224
Normal
-0.2
964
Normal
-0.2
111
Normal
-0.2
926
Normal
-0.2
975
Tumor
-0.2
866
Normal
-0.2
1044
Normal
-0.2
1014
Normal
-0.2
461
Tumor
-0.2
217
Tumor
-0.2
746
Normal
-0.2
524
Normal
-0.2
1015
Tumor
-0.2
1045
Tumor
-0.2
513
Tumor
-0.3
392
Normal
-0.3
142
Normal
-0.3
878
Normal
-0.3
354
Normal
-0.3
956
Normal
-0.3
534
Normal
-0.3
816
Normal
-0.3
737
Tumor
-0.3
978
Normal
-0.3
984
Normal
-0.3
1046
Normal
-0.3
298
Normal
-0.3
386
Normal
-0.3
852
Normal
-0.3
976
Normal
-0.3
124
Normal
-0.3
968
Normal
-0.3
545
Tumor
-0.3
672
Normal
-0.3
515
Tumor
-0.3
146
Normal
-0.3
952
Normal
-0.3
868
Normal
-0.4
924
Normal
-0.4
498
Normal
-0.4
554
Normal
-0.4
873
Tumor
-0.4
862
Normal
-0.4
954
Normal
-0.4
425
Tumor
-0.4
636
Normal
-0.4
1026
Normal
-0.4
342
Normal
-0.4
344
Normal
-0.4
536
Normal
-0.4
943
Tumor
-0.4
882
Normal
-0.4
813
Tumor
-0.4
492
Normal
-0.4
478
Normal
-0.4
917
Tumor
-0.4
874
Normal
-0.5
884
Normal
-0.5
744
Normal
-0.5
966
Normal
-0.5
218
Normal
-0.6
343
Tumor
-0.6
863
Tumor
-0.6
538
Normal
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
