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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CERS2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
499.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A217-01A
75 years, female, white, stage:Stage II, dead, 1397 days
2716.4
TCGA-FV-A2QR-01A
75 years, male, white, stage:Stage I, dead, 581 days
1384.9
TCGA-DD-AAC8-01A
72 years, male, asian, stage:Stage I, dead, 16 days
1197.0
TCGA-BC-A10W-01A
50 years, male, asian, stage:'--, dead, 91 days
1188.9
TCGA-CC-A7IH-01A
58 years, male, asian, stage:Stage IIIA, alive, 365 days
1140.2
TCGA-DD-A1EB-01A
72 years, female, stage:Stage I, alive, 2017 days
1134.6
TCGA-DD-AADA-01A
66 years, female, asian, stage:Stage I, alive, 1233 days
1131.7
TCGA-DD-AACH-01A
69 years, male, asian, stage:Stage II, dead, 195 days
1113.1
TCGA-CC-5264-01A
71 years, male, asian, stage:Stage IIIA, dead, 102 days
1104.6
TCGA-DD-AACE-01A
62 years, male, asian, stage:Stage I, alive, 2184 days
1103.7
TCGA-DD-AAVY-01A
56 years, male, asian, stage:Stage IIIA, alive, 1970 days
1075.6
TCGA-DD-AAVV-01A
56 years, male, asian, stage:Stage II, alive, 2455 days
1043.8
TCGA-ED-A7XP-01A
53 years, female, asian, stage:Stage II, alive, 400 days
1038.4
TCGA-ZP-A9D2-01A
51 years, male, white, stage:'--, dead, 765 days
986.4
TCGA-BC-A3KG-01A
68 years, female, white, stage:Stage II, alive, 680 days
980.5
TCGA-G3-AAV7-01A
38 years, male, asian, stage:Stage II, alive, 361 days
962.4
TCGA-DD-AADY-01A
55 years, female, asian, stage:Stage I, alive, 555 days
959.7
TCGA-CC-A5UD-01A
45 years, male, asian, stage:Stage IIIA, dead, 304 days
949.9
TCGA-ZP-A9D1-01A
56 years, female, white, stage:'--, alive, 21 days
914.6
TCGA-CC-A3MC-01A
54 years, male, asian, stage:Stage IIIA, alive, 363 days
913.1
TCGA-DD-A1EH-01A
23 years, male, white, stage:Stage III, alive, 1495 days
908.2
TCGA-BC-A10U-01A
69 years, male, white, stage:'--, dead, 837 days
905.3
TCGA-UB-A7MB-01A
24 years, male, white, stage:Stage II, alive, 601 days
893.8
TCGA-DD-AADP-01A
45 years, male, asian, stage:Stage I, alive, 458 days
886.8
TCGA-UB-A7MA-01A
62 years, female, white, stage:Stage II, alive, 848 days
875.0
TCGA-ZP-A9CV-01A
59 years, male, white, stage:'--, dead, 1088 days
869.9
TCGA-DD-A4NH-01A
65 years, female, white, stage:Stage IIIB, alive, 917 days
849.0
TCGA-2Y-A9HA-01A
70 years, male, white, stage:Stage II, dead, 36 days
845.9
TCGA-G3-A5SI-01A
44 years, male, asian, stage:Stage II, dead, 768 days
840.8
TCGA-CC-A7IK-01A
59 years, male, asian, stage:Stage IIIA, dead, 262 days
840.7
TCGA-LG-A9QC-01A
48 years, male, white, stage:Stage I, alive, 425 days
818.8
TCGA-DD-AADC-01A
53 years, male, asian, stage:Stage I, dead, 425 days
811.1
TCGA-DD-AAE6-01A
59 years, female, asian, stage:Stage I, alive, 141 days
804.4
TCGA-DD-AADD-01A
51 years, male, asian, stage:Stage I, alive, 1231 days
802.0
TCGA-DD-A4NA-01A
67 years, female, white, stage:Stage IIIC, alive, 1008 days
800.8
TCGA-WJ-A86L-01A
68 years, female, white, stage:Stage I, alive, 345 days
798.2
TCGA-DD-A115-01A
53 years, male, white, stage:Stage IIIA, dead, 2542 days
797.5
TCGA-DD-AAD0-01A
73 years, female, asian, stage:Stage I, alive, 137 days
792.2
TCGA-DD-A11D-01A
57 years, female, white, stage:Stage I, dead, 1560 days
789.2
TCGA-CC-A3MB-01A
36 years, male, asian, stage:Stage IIIA, dead, 315 days
774.3
TCGA-5R-AA1C-01A
57 years, male, white, stage:Stage II, alive, 520 days
771.8
TCGA-DD-AAW1-01A
55 years, male, asian, stage:Stage IIIA, alive, 1989 days
768.5
TCGA-DD-A118-01A
77 years, female, white, stage:Stage II, alive, 3437 days
765.7
TCGA-DD-AACS-01A
39 years, male, asian, stage:Stage I, alive, 1804 days
765.2
TCGA-DD-A113-01A
55 years, female, white, stage:Stage II, alive, 2425 days
764.6
TCGA-ZP-A9D0-01A
67 years, female, black or african american, stage:'--, alive, 1091 days
762.7
TCGA-DD-AAE9-01A
69 years, male, asian, stage:Stage I, alive, 722 days
760.6
TCGA-DD-A11B-01A
73 years, male, white, stage:Stage I, dead, 14 days
760.2
TCGA-ED-A82E-01A
60 years, female, asian, stage:Stage IIIA, alive, 408 days
752.1
TCGA-BC-A10Q-01A
72 years, female, white, stage:'--, dead, 1135 days
749.4
TCGA-ED-A7PY-01A
20 years, female, asian, stage:Stage II, alive, 390 days
747.7
TCGA-XR-A8TG-01A
58 years, male, white, stage:Stage I, alive, 898 days
737.3
TCGA-DD-A4NF-01A
72 years, male, white, stage:Stage I, alive, 942 days
731.7
TCGA-DD-AAEG-01A
59 years, female, asian, stage:Stage I, alive, 719 days
727.8
TCGA-DD-AADW-01A
48 years, male, asian, stage:Stage I, alive, 587 days
720.5
TCGA-DD-A4NV-01A
61 years, male, white, stage:Stage IIIA, alive, 2398 days
706.5
TCGA-CC-5263-01A
35 years, male, asian, stage:Stage IIIA, dead, 129 days
703.8
TCGA-CC-A5UE-01A
48 years, male, asian, stage:Stage IIIB, dead, 272 days
703.1
TCGA-DD-AAW3-01A
69 years, male, asian, stage:Stage I, alive, 1633 days
701.4
TCGA-2Y-A9H9-01A
70 years, male, white, stage:Stage I, alive, 697 days
699.9
TCGA-YA-A8S7-01A
68 years, male, white, stage:Stage IIIA, dead, 412 days
692.8
TCGA-DD-AAVP-01A
48 years, male, asian, stage:Stage I, alive, 2752 days
687.9
TCGA-UB-A7ME-01A
51 years, male, asian, stage:Stage I, alive, 486 days
684.1
TCGA-DD-AACT-01A
69 years, female, asian, stage:Stage I, alive, 1562 days
683.5
TCGA-DD-AACI-01A
69 years, male, asian, stage:Stage II, alive, 1618 days
683.5
TCGA-DD-AAVZ-01A
38 years, male, asian, stage:Stage I, alive, 1900 days
683.1
TCGA-CC-A8HU-01A
39 years, female, asian, stage:Stage IIIA, dead, 344 days
680.0
TCGA-DD-A73B-01A
72 years, female, white, stage:Stage I, dead, 283 days
678.5
TCGA-DD-AADF-01A
64 years, female, asian, stage:Stage I, dead, 115 days
677.2
TCGA-CC-A8HS-01A
18 years, male, asian, stage:Stage IIIC, dead, 300 days
676.7
TCGA-DD-A4NO-01A
65 years, male, white, stage:Stage I, alive, 2245 days
674.3
TCGA-DD-A3A9-01A
64 years, female, white, stage:Stage IVB, dead, 931 days
673.9
TCGA-CC-5261-01A
44 years, male, asian, stage:Stage II, dead, 97 days
671.5
TCGA-G3-A6UC-01A
65 years, male, white, stage:Stage IIIB, alive, 671 days
671.5
TCGA-ED-A8O5-01A
59 years, female, asian, stage:Stage IIIA, alive, 406 days
666.2
TCGA-DD-A1EE-01A
73 years, male, white, stage:Stage IIIA, dead, 349 days
664.4
TCGA-DD-AAE1-01A
52 years, male, asian, stage:Stage I, alive, 552 days
662.1
TCGA-CC-A1HT-01A
50 years, male, asian, stage:Stage IIIA, dead, 101 days
659.6
TCGA-DD-A73D-01A
68 years, female, white, stage:Stage II, alive, 693 days
658.2
TCGA-5C-A9VH-01A
70 years, male, white, stage:Stage I, alive, 322 days
654.7
TCGA-UB-A7MC-01A
59 years, male, white, stage:Stage IIIA, alive, 500 days
653.0
TCGA-2Y-A9GU-01A
55 years, female, white, stage:Stage I, alive, 1939 days
652.9
TCGA-BC-A8YO-01A
66 years, female, white, stage:Stage IIIC, alive, 562 days
651.0
TCGA-EP-A12J-01A
62 years, male, black or african american, stage:Stage I, alive, 570 days
647.8
TCGA-BW-A5NO-01A
50 years, male, black or african american, stage:Stage IIIA, alive, 20 days
644.2
TCGA-ZP-A9CZ-01A
72 years, male, asian, stage:'--, alive, 706 days
644.1
TCGA-DD-AACY-01A
61 years, male, asian, stage:Stage I, alive, 1450 days
640.7
TCGA-DD-AADG-01A
70 years, male, asian, stage:Stage IIIA, alive, 1145 days
639.9
TCGA-2Y-A9H8-01A
85 years, female, white, stage:'--, dead, 633 days
638.4
TCGA-DD-AAW2-01A
69 years, male, asian, stage:Stage I, alive, 1855 days
632.4
TCGA-DD-A3A8-01A
75 years, male, white, stage:Stage II, dead, 11 days
631.4
TCGA-G3-A5SL-01A
70 years, male, white, stage:Stage II, alive, 621 days
629.2
TCGA-WX-AA44-01A
64 years, female, white, stage:Stage I, alive, 615 days
625.6
TCGA-DD-AADL-01A
58 years, male, asian, stage:Stage I, alive, 636 days
624.4
TCGA-DD-A1EA-01A
68 years, male, asian, stage:Stage II, alive, 2415 days
624.4
TCGA-EP-A2KB-01A
46 years, female, white, stage:Stage I, dead, 596 days
622.8
TCGA-DD-AAW0-01A
54 years, male, asian, stage:Stage I, alive, 2015 days
617.2
TCGA-FV-A23B-01A
70 years, female, white, stage:Stage II, dead, 1852 days
616.8
TCGA-EP-A2KC-01A
62 years, male, black or african american, stage:Stage I, dead, 19 days
616.0
TCGA-ZP-A9D4-01A
64 years, female, white, stage:'--, alive, 395 days
610.5
TCGA-DD-A4NN-01A
56 years, female, white, stage:Stage I, dead, 899 days
606.8
TCGA-CC-A7IL-01A
61 years, male, asian, stage:Stage IIIA, dead, 278 days
602.5
TCGA-DD-AADV-01A
50 years, male, asian, stage:Stage I, alive, 574 days
601.9
TCGA-DD-AACN-01A
32 years, male, asian, stage:Stage I, alive, 1302 days
601.1
TCGA-G3-A25Y-01A
52 years, female, asian, stage:Stage I, dead, 452 days
596.7
TCGA-BC-A10Z-01A
62 years, female, white, stage:Stage I, dead, 34 days
596.0
TCGA-RC-A7SH-01A
42 years, male, asian, stage:Stage II, alive, 468 days
591.6
TCGA-DD-AAVW-01A
35 years, male, asian, stage:Stage I, alive, 2317 days
589.8
TCGA-XR-A8TC-01A
43 years, female, white, stage:Stage I, alive, 1339 days
588.5
TCGA-G3-A3CG-01A
80 years, male, white, stage:Stage I, alive, 673 days
586.8
TCGA-BC-A10R-01A
66 years, female, white, stage:'--, dead, 308 days
585.8
TCGA-DD-A11C-01A
69 years, male, white, stage:Stage I, alive, 662 days
581.7
TCGA-FV-A496-01A
84 years, female, white, stage:Stage I, alive, 10 days
577.7
TCGA-ED-A459-01A
47 years, male, asian, stage:Stage II, alive, 910 days
571.7
TCGA-DD-AACV-01A
53 years, male, asian, stage:Stage I, alive, 1531 days
570.9
TCGA-HP-A5N0-01A
90 years, female, stage:'--, dead, 752 days
566.1
TCGA-BC-A10Y-01A
76 years, male, white, stage:'--, dead, 711 days
564.7
TCGA-DD-A1EK-01A
64 years, female, white, stage:Stage IVB, dead, 558 days
558.8
TCGA-DD-AAVQ-01A
38 years, male, asian, stage:Stage I, alive, 2728 days
555.4
TCGA-ED-A8O6-01A
50 years, female, asian, stage:Stage IIIA, dead, 56 days
554.5
TCGA-DD-AADI-01A
43 years, female, asian, stage:Stage I, alive, 1085 days
553.8
TCGA-CC-5258-01A
48 years, male, asian, stage:Stage II, dead, 129 days
553.5
TCGA-RC-A7SK-01A
59 years, male, asian, stage:Stage I, alive, 472 days
548.7
TCGA-DD-AACJ-01A
75 years, male, asian, stage:Stage II, alive, 2102 days
544.7
TCGA-CC-5262-01A
67 years, male, asian, stage:Stage IIIC, dead, 103 days
541.4
TCGA-DD-AACU-01A
59 years, male, asian, stage:Stage I, alive, 1567 days
539.9
TCGA-DD-AAEA-01A
65 years, male, asian, stage:Stage I, alive, 575 days
537.9
TCGA-EP-A3JL-01A
76 years, male, white, stage:Stage I, alive, 303 days
537.8
TCGA-CC-5260-01A
61 years, female, asian, stage:Stage IIIC, dead, 87 days
536.9
TCGA-DD-AAD3-01A
43 years, male, asian, stage:Stage I, alive, 1295 days
534.8
TCGA-DD-AACF-01A
68 years, male, asian, stage:Stage I, dead, 365 days
532.7
TCGA-G3-AAV4-01A
83 years, female, white, stage:Stage I, dead, 27 days
528.3
TCGA-DD-AAVR-01A
44 years, male, asian, stage:Stage I, alive, 2513 days
527.9
TCGA-XR-A8TF-01A
74 years, male, white, stage:Stage I, dead, 693 days
527.3
TCGA-RC-A6M4-01A
74 years, female, white, stage:Stage IIIA, alive, 22 days
527.2
TCGA-UB-A7MD-01A
67 years, male, black or african american, stage:Stage I, dead, 52 days
523.1
TCGA-LG-A6GG-01A
79 years, female, white, stage:Stage II, alive, 387 days
522.0
TCGA-NI-A8LF-01A
74 years, male, white, stage:Stage I, alive, 799 days
521.8
TCGA-BC-A5W4-01A
69 years, male, white, stage:Stage IIIA, dead, 547 days
516.0
TCGA-DD-AACZ-01A
63 years, female, asian, stage:Stage I, dead, 171 days
515.9
TCGA-DD-A73C-01A
65 years, female, white, stage:Stage IIIA, alive, 701 days
514.7
TCGA-DD-AAEE-01A
55 years, male, asian, stage:Stage I, alive, 810 days
514.2
TCGA-DD-A4NK-01A
80 years, female, white, stage:Stage IIIA, dead, 1210 days
513.5
TCGA-CC-A9FW-01A
68 years, male, asian, stage:Stage IIIA, alive, 248 days
512.1
TCGA-2Y-A9GW-01A
64 years, male, white, stage:Stage I, dead, 1271 days
509.7
TCGA-DD-A1EG-01A
76 years, male, white, stage:Stage I, dead, 1372 days
508.2
TCGA-G3-A25S-01A
64 years, male, white, stage:Stage I, dead, 416 days
508.2
TCGA-DD-AAVS-01A
56 years, male, asian, stage:Stage I, alive, 1823 days
504.1
TCGA-DD-A1EF-01A
57 years, female, white, stage:Stage I, dead, 394 days
503.8
TCGA-FV-A3I1-01A
81 years, female, white, stage:Stage II, dead, 247 days
502.8
TCGA-2Y-A9H5-01A
59 years, female, white, stage:Stage I, dead, 555 days
501.0
TCGA-QA-A7B7-01A
48 years, male, black or african american, stage:Stage II, alive, 94 days
497.9
TCGA-ED-A66Y-01A
51 years, female, asian, stage:Stage IIIA, dead, 296 days
497.7
TCGA-KR-A7K0-01A
65 years, male, white, stage:Stage I, dead, 65 days
493.6
TCGA-EP-A26S-01A
70 years, male, white, stage:Stage I, alive, 608 days
486.1
TCGA-K7-A6G5-01A
66 years, male, white, stage:Stage I, alive, 512 days
482.3
TCGA-T1-A6J8-01A
68 years, male, white, stage:'--, alive, 23 days
479.0
TCGA-G3-AAV1-01A
51 years, male, asian, stage:Stage IIIC, dead, 359 days
473.3
TCGA-G3-A5SM-01A
58 years, male, white, stage:Stage II, alive, 520 days
472.1
TCGA-DD-AADK-01A
68 years, female, asian, stage:Stage II, alive, 1049 days
469.7
TCGA-CC-A9FS-01A
55 years, male, asian, stage:Stage II, alive, 211 days
467.0
TCGA-ED-A66X-01A
35 years, male, asian, stage:Stage IIIA, alive, 406 days
464.8
TCGA-FV-A3R2-01A
75 years, male, white, stage:Stage I, dead, 194 days
462.6
TCGA-2Y-A9H6-01A
68 years, female, white, stage:Stage I, alive, 357 days
461.6
TCGA-DD-AAD8-01A
73 years, female, asian, stage:Stage I, alive, 1219 days
461.4
TCGA-DD-AAED-01A
51 years, male, asian, stage:Stage I, alive, 763 days
458.3
TCGA-DD-A39W-01A
29 years, female, white, stage:Stage III, dead, 827 days
456.2
TCGA-FV-A3R3-01A
38 years, female, white, stage:Stage I, dead, 366 days
456.1
TCGA-KR-A7K2-01A
64 years, male, white, stage:Stage I, alive, 829 days
455.1
TCGA-G3-AAV3-01A
58 years, female, white, stage:Stage II, alive, 412 days
452.4
TCGA-ED-A7PZ-01A
61 years, male, asian, stage:Stage II, alive, 6 days
451.5
TCGA-ED-A7PX-01A
48 years, female, asian, stage:Stage II, alive, 6 days
451.5
TCGA-2Y-A9H0-01A
49 years, male, white, stage:Stage IIIA, alive, 3675 days
451.4
TCGA-DD-A39X-01A
78 years, female, white, stage:Stage I, dead, 1694 days
450.7
TCGA-DD-A114-01A
42 years, male, black or african american, stage:Stage II, dead, 1149 days
450.6
TCGA-UB-A7MF-01A
56 years, male, white, stage:Stage IIIA, dead, 214 days
447.7
TCGA-XR-A8TE-01A
16 years, male, white, stage:Stage IIIA, alive, 925 days
447.6
TCGA-BC-A216-01A
62 years, female, white, stage:Stage IIIA, alive, 1351 days
447.2
TCGA-BC-A112-01A
80 years, male, white, stage:'--, dead, 153 days
446.5
TCGA-MI-A75G-01A
63 years, male, white, stage:Stage II, alive, 698 days
445.2
TCGA-DD-A4NI-01A
67 years, male, white, stage:Stage II, alive, 816 days
445.0
TCGA-G3-A25U-01A
63 years, female, asian, stage:Stage I, alive, 1636 days
444.4
TCGA-DD-AACX-01A
66 years, male, asian, stage:Stage II, alive, 170 days
443.1
TCGA-ED-A4XI-01A
58 years, male, asian, stage:Stage II, alive, 819 days
442.3
TCGA-5C-AAPD-01A
61 years, male, asian, stage:Stage II, alive, 20 days
438.7
TCGA-DD-A4NG-01A
77 years, male, white, stage:Stage IIIA, dead, 802 days
438.6
TCGA-G3-A3CJ-01A
52 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
438.5
TCGA-RC-A7SB-01A
53 years, male, asian, stage:Stage II, alive, 588 days
437.9
TCGA-GJ-A9DB-01A
68 years, male, white, stage:Stage I, dead, 67 days
437.4
TCGA-4R-AA8I-01A
66 years, male, white, stage:Stage II, dead, 262 days
437.0
TCGA-ED-A7XO-01A
29 years, male, asian, stage:Stage IIIA, alive, 427 days
432.2
TCGA-DD-AAEH-01A
73 years, male, asian, stage:Stage I, alive, 784 days
431.8
TCGA-DD-AAD2-01A
66 years, male, asian, stage:Stage I, alive, 658 days
430.0
TCGA-3K-AAZ8-01A
65 years, male, black or african american, stage:Stage IIIB, alive, 396 days
427.5
TCGA-DD-AADM-01A
58 years, male, asian, stage:Stage II, dead, 12 days
424.9
TCGA-CC-A8HT-01A
74 years, male, asian, stage:Stage IIIA, dead, 140 days
424.0
TCGA-2Y-A9GZ-01A
82 years, female, white, stage:Stage II, dead, 848 days
423.8
TCGA-ZS-A9CG-01A
55 years, male, white, stage:Stage II, alive, 341 days
422.4
TCGA-DD-AAEK-01A
51 years, male, asian, stage:Stage II, alive, 1067 days
421.7
TCGA-CC-A5UC-01A
63 years, male, asian, stage:Stage IIIA, dead, 347 days
421.5
TCGA-DD-AACA-01A
65 years, male, asian, stage:Stage I, alive, 2301 days
421.4
TCGA-EP-A3RK-01A
73 years, male, white, stage:Stage IIIA, alive, 363 days
420.1
TCGA-CC-A8HV-01A
51 years, female, asian, stage:Stage II, dead, 279 days
418.5
TCGA-O8-A75V-01A
54 years, male, stage:Stage I, alive, 538 days
417.1
TCGA-DD-AACW-01A
43 years, male, asian, stage:Stage I, alive, 1424 days
416.1
TCGA-G3-A3CK-01A
61 years, male, asian, stage:Stage I, alive, 585 days
416.1
TCGA-DD-A73E-01A
66 years, male, white, stage:Stage I, alive, 44 days
415.5
TCGA-KR-A7K7-01A
61 years, female, white, stage:Stage II, alive, 951 days
414.6
TCGA-DD-A119-01A
40 years, male, asian, stage:Stage IV, dead, 223 days
413.8
TCGA-WQ-A9G7-01A
71 years, female, white, stage:'--, alive, 30 days
410.4
TCGA-DD-A39V-01A
77 years, male, white, stage:Stage II, dead, 643 days
407.6
TCGA-DD-A4NE-01A
75 years, female, white, stage:Stage IIIA, dead, 660 days
406.9
TCGA-G3-AAV5-01A
67 years, male, white, stage:Stage II, alive, 354 days
405.3
TCGA-MI-A75I-01A
61 years, male, black or african american, stage:'--, alive, 630 days
402.3
TCGA-DD-AA3A-01A
81 years, female, white, stage:Stage I, dead, 410 days
401.1
TCGA-DD-AACQ-01A
50 years, male, asian, stage:Stage II, dead, 432 days
401.1
TCGA-ZP-A9CY-01A
66 years, female, white, stage:'--, alive, 782 days
400.3
TCGA-FV-A2QQ-01A
80 years, male, white, stage:Stage I, alive, 729 days
399.5
TCGA-WQ-AB4B-01A
62 years, male, white, stage:Stage II, alive, 395 days
397.6
TCGA-HP-A5MZ-01A
78 years, male, stage:Stage I, dead, 91 days
397.1
TCGA-DD-A1EL-01A
23 years, male, black or african american, stage:Stage II, dead, 415 days
394.7
TCGA-DD-AADB-01A
51 years, male, asian, stage:Stage I, alive, 1242 days
394.4
TCGA-DD-AACB-01A
74 years, female, asian, stage:Stage I, alive, 2324 days
392.6
TCGA-DD-A3A3-01A
45 years, male, asian, stage:Stage I, dead, 535 days
391.2
TCGA-G3-A3CH-01A
53 years, male, asian, stage:Stage IIIA, alive, 780 days
390.2
TCGA-G3-A7M9-01A
70 years, male, white, stage:Stage IIIB, dead, 56 days
389.8
TCGA-UB-AA0U-01A
60 years, male, white, stage:Stage II, alive, 327 days
389.6
TCGA-DD-AAE0-01A
45 years, female, asian, stage:Stage IIIA, alive, 555 days
389.1
TCGA-CC-A7IF-01A
59 years, male, asian, stage:Stage IIIA, dead, 649 days
387.3
TCGA-2Y-A9GX-01A
68 years, male, white, stage:Stage I, alive, 2442 days
387.2
TCGA-2Y-A9GT-01A
51 years, male, white, stage:Stage I, dead, 1624 days
386.4
TCGA-2Y-A9H7-01A
81 years, female, white, stage:Stage I, alive, 1168 days
385.6
TCGA-DD-AADR-01A
58 years, male, asian, stage:Stage I, alive, 2028 days
385.1
TCGA-RC-A6M6-01A
75 years, male, white, stage:Stage II, alive, 9 days
384.0
TCGA-DD-A4NJ-01A
54 years, female, white, stage:Stage II, alive, 928 days
383.3
TCGA-XR-A8TD-01A
49 years, female, white, stage:Stage IIIB, alive, 1030 days
383.0
TCGA-NI-A4U2-01A
71 years, male, white, stage:Stage IIIA, dead, 1791 days
383.0
TCGA-BC-A69I-01A
69 years, male, white, stage:Stage I, alive, 387 days
383.0
TCGA-BC-A3KF-01A
66 years, female, white, stage:Stage I, alive, 8 days
380.0
TCGA-ZS-A9CE-01A
79 years, female, white, stage:Stage II, alive, 1241 days
377.6
TCGA-DD-AACL-01A
66 years, female, asian, stage:Stage I, dead, 107 days
376.3
TCGA-KR-A7K8-01A
57 years, male, stage:Stage I, alive, 906 days
376.3
TCGA-DD-AAC9-01A
51 years, male, asian, stage:Stage I, alive, 347 days
376.2
TCGA-DD-A116-01A
68 years, male, asian, stage:Stage IIIA, dead, 1622 days
375.6
TCGA-CC-A3MA-01A
61 years, male, asian, stage:Stage IIIA, dead, 303 days
371.8
TCGA-FV-A3I0-01A
76 years, female, white, stage:Stage II, alive, 848 days
370.3
TCGA-MI-A75H-01A
77 years, male, white, stage:'--, alive, 747 days
369.8
TCGA-RC-A7S9-01A
47 years, female, asian, stage:Stage I, alive, 640 days
367.9
TCGA-DD-AAE3-01A
50 years, male, asian, stage:Stage I, alive, 566 days
367.1
TCGA-ES-A2HT-01A
54 years, male, black or african american, stage:Stage I, dead, 438 days
365.9
TCGA-DD-AACC-01A
61 years, male, asian, stage:Stage I, dead, 1685 days
364.0
TCGA-DD-AAD5-01A
54 years, male, asian, stage:Stage I, alive, 1345 days
363.1
TCGA-MI-A75E-01A
61 years, male, white, stage:Stage IIIC, alive, 507 days
362.8
TCGA-DD-AAVU-01A
46 years, male, asian, stage:Stage II, alive, 2202 days
361.2
TCGA-DD-A4NS-01A
61 years, female, white, stage:Stage I, dead, 2456 days
360.3
TCGA-DD-A39Y-01A
67 years, male, asian, stage:Stage I, dead, 171 days
360.2
TCGA-DD-A1EI-01A
46 years, male, asian, stage:Stage I, alive, 183 days
359.9
TCGA-G3-A7M6-01A
60 years, female, white, stage:Stage I, alive, 632 days
358.3
TCGA-BC-A10T-01A
76 years, male, white, stage:'--, dead, 837 days
350.7
TCGA-2Y-A9GV-01A
54 years, female, white, stage:Stage I, dead, 2532 days
350.5
TCGA-5C-A9VG-01A
58 years, male, white, stage:Stage II, alive, 328 days
350.4
TCGA-DD-A3A5-01A
66 years, female, white, stage:Stage III, dead, 3125 days
346.9
TCGA-G3-A25Z-01A
58 years, male, asian, stage:Stage I, alive, 655 days
346.4
TCGA-EP-A2KA-01A
52 years, female, white, stage:Stage IIIA, dead, 627 days
345.7
TCGA-G3-A5SK-01A
58 years, male, white, stage:Stage I, alive, 744 days
344.9
TCGA-DD-A3A1-01A
65 years, male, stage:Stage IIIA, dead, 233 days
344.9
TCGA-2Y-A9HB-01A
66 years, male, stage:Stage I, alive, 260 days
342.8
TCGA-DD-A3A2-01A
76 years, female, white, stage:Stage I, dead, 2131 days
342.7
TCGA-DD-A73F-01A
77 years, female, white, stage:Stage I, alive, 1085 days
342.3
TCGA-ZS-A9CD-01A
73 years, male, white, stage:Stage II, dead, 1386 days
342.2
TCGA-PD-A5DF-01A
58 years, female, white, stage:Stage IIIB, dead, 639 days
340.4
TCGA-5R-AAAM-01A
65 years, female, white, stage:Stage II, dead, 46 days
339.3
TCGA-2Y-A9GS-01A
58 years, male, white, stage:'--, dead, 724 days
339.2
TCGA-DD-AADJ-01A
70 years, female, asian, stage:Stage I, alive, 1066 days
338.9
TCGA-CC-A7IG-01A
47 years, male, asian, stage:Stage II, dead, 299 days
335.5
TCGA-K7-A5RG-01A
66 years, male, black or african american, stage:Stage I, alive, 519 days
334.9
TCGA-2Y-A9H4-01A
68 years, male, black or african american, stage:Stage I, alive, 1452 days
333.9
TCGA-G3-AAV0-01A
58 years, male, asian, stage:Stage I, alive, 476 days
333.6
TCGA-DD-AACP-01A
64 years, male, asian, stage:Stage I, alive, 415 days
333.4
TCGA-DD-AADU-01A
60 years, male, asian, stage:Stage II, alive, 554 days
331.6
TCGA-ZS-A9CF-01A
64 years, male, white, stage:Stage II, alive, 2412 days
327.9
TCGA-DD-AACK-01A
70 years, male, asian, stage:Stage I, alive, 9 days
323.8
TCGA-2Y-A9H2-01A
64 years, female, white, stage:Stage I, alive, 1731 days
321.4
TCGA-DD-AAEI-01A
72 years, male, asian, stage:Stage I, alive, 1531 days
319.9
TCGA-DD-A39Z-01A
43 years, female, stage:Stage II, dead, 601 days
318.0
TCGA-RG-A7D4-01A
69 years, male, black or african american, stage:Stage II, alive, 1098 days
315.9
TCGA-DD-AAVX-01A
38 years, male, asian, stage:Stage II, alive, 1718 days
315.0
TCGA-BC-A10X-01A
52 years, female, white, stage:Stage IIIA, dead, 770 days
313.4
TCGA-DD-A3A4-01A
37 years, male, white, stage:Stage IIIA, dead, 612 days
312.9
TCGA-G3-A25T-01A
45 years, female, white, stage:Stage IIIA, alive, 1553 days
311.3
TCGA-DD-AAEB-01A
60 years, male, asian, stage:Stage I, alive, 478 days
310.4
TCGA-G3-AAV2-01A
50 years, male, white, stage:Stage I, alive, 372 days
307.2
TCGA-K7-A5RF-01A
64 years, male, white, stage:Stage I, alive, 631 days
306.7
TCGA-BD-A2L6-01A
69 years, male, white, stage:'--, alive, 1363 days
306.6
TCGA-DD-AAE7-01A
72 years, male, asian, stage:Stage I, alive, 644 days
305.6
TCGA-DD-A4NR-01A
85 years, female, white, stage:Stage I, dead, 9 days
303.9
TCGA-DD-A73A-01A
71 years, male, white, stage:Stage I, alive, 728 days
303.2
TCGA-G3-A7M8-01A
31 years, male, asian, stage:Stage I, alive, 430 days
301.1
TCGA-CC-5259-01A
60 years, female, asian, stage:Stage IIIC, alive, 250 days
300.8
TCGA-DD-A4NB-01A
25 years, male, white, stage:Stage I, alive, 989 days
297.6
TCGA-G3-A7M5-01A
76 years, male, asian, stage:Stage I, alive, 447 days
296.9
TCGA-G3-A25X-01A
73 years, male, asian, stage:Stage II, alive, 1779 days
294.2
TCGA-ED-A5KG-01A
60 years, female, asian, stage:Stage II, alive, 854 days
294.1
TCGA-GJ-A3OU-01A
59 years, male, white, stage:Stage I, alive, 879 days
293.6
TCGA-DD-A4NQ-01A
60 years, male, white, stage:Stage II, dead, 373 days
289.7
TCGA-BC-A10S-01A
81 years, male, white, stage:'--, dead, 1423 days
288.2
TCGA-DD-AAD1-01A
51 years, female, asian, stage:Stage I, alive, 564 days
287.9
TCGA-G3-A7M7-01A
65 years, male, white, stage:Stage I, alive, 361 days
285.9
TCGA-FV-A495-01A
51 years, female, white, stage:Stage II, alive, 1 days
285.7
TCGA-DD-A3A7-01A
67 years, male, stage:Stage IIIB, dead, 419 days
280.5
TCGA-BD-A3ER-01A
62 years, male, white, stage:Stage II, alive, 1115 days
279.4
TCGA-UB-AA0V-01A
69 years, female, white, stage:Stage I, alive, 314 days
277.2
TCGA-DD-A1EJ-01A
71 years, female, white, stage:Stage IIIC, dead, 1005 days
276.8
TCGA-RC-A7SF-01A
66 years, male, asian, stage:Stage I, alive, 579 days
275.8
TCGA-MR-A520-01A
58 years, male, white, stage:Stage I, alive, 229 days
274.6
TCGA-DD-A4NL-01A
46 years, male, white, stage:Stage I, alive, 1711 days
271.3
TCGA-CC-A7IE-01A
57 years, male, asian, stage:Stage IIIA, dead, 217 days
269.1
TCGA-WX-AA46-01A
61 years, male, white, stage:Stage II, alive, 756 days
268.7
TCGA-DD-AAD6-01A
66 years, male, asian, stage:Stage IIIA, alive, 672 days
268.6
TCGA-WX-AA47-01A
33 years, female, white, stage:Stage IIIA, dead, 556 days
266.8
TCGA-DD-AAE2-01A
51 years, male, asian, stage:Stage I, alive, 638 days
265.3
TCGA-BD-A3EP-01A
75 years, female, black or african american, stage:Stage I, alive, 409 days
261.7
TCGA-2Y-A9GY-01A
64 years, female, white, stage:Stage II, dead, 757 days
260.9
TCGA-DD-A1EC-01A
20 years, female, white, stage:Stage I, alive, 602 days
259.9
TCGA-2Y-A9H3-01A
45 years, male, white, stage:Stage II, alive, 1516 days
258.2
TCGA-DD-AADQ-01A
59 years, male, asian, stage:Stage II, alive, 436 days
255.0
TCGA-K7-AAU7-01A
61 years, male, white, stage:Stage II, alive, 359 days
252.7
TCGA-FV-A4ZQ-01A
52 years, male, white, stage:Stage I, alive, 12 days
250.7
TCGA-G3-A3CI-01A
71 years, male, white, stage:Stage I, alive, 180 days
247.8
TCGA-RC-A6M5-01A
20 years, female, white, stage:Stage IVA, alive, 15 days
245.3
TCGA-DD-A4NP-01A
32 years, male, white, stage:Stage I, alive, 3308 days
242.8
TCGA-LG-A9QD-01A
68 years, male, white, stage:Stage IIIA, alive, 366 days
242.5
TCGA-G3-A25V-01A
68 years, male, white, stage:Stage I, alive, 860 days
238.1
TCGA-DD-A4ND-01A
56 years, female, white, stage:Stage I, alive, 2746 days
236.3
TCGA-DD-A73G-01A
73 years, female, white, stage:Stage I, alive, 3478 days
231.3
TCGA-DD-AACG-01A
52 years, male, asian, stage:Stage II, dead, 469 days
228.9
TCGA-ED-A627-01A
74 years, male, white, stage:Stage I, alive, 423 days
221.4
TCGA-DD-A1ED-01A
68 years, male, white, stage:Stage I, alive, 2301 days
220.9
TCGA-BC-A110-01A
51 years, female, black or african american, stage:'--, dead, 2116 days
218.4
TCGA-DD-AADO-01A
55 years, male, asian, stage:Stage I, alive, 453 days
216.4
TCGA-ED-A97K-01A
54 years, male, asian, stage:Stage IIIA, alive, 6 days
213.3
TCGA-MI-A75C-01A
64 years, male, white, stage:Stage I, alive, 291 days
210.7
TCGA-G3-AAUZ-01A
48 years, male, stage:Stage I, alive, 480 days
207.7
TCGA-DD-AACD-01A
48 years, male, asian, stage:Stage I, dead, 381 days
203.3
TCGA-G3-AAV6-01A
53 years, female, white, stage:Stage IIIA, dead, 65 days
202.1
TCGA-2Y-A9H1-01A
58 years, male, white, stage:Stage I, dead, 1229 days
201.3
TCGA-DD-AAE4-01A
49 years, female, asian, stage:Stage I, alive, 608 days
186.9
TCGA-G3-A5SJ-01A
59 years, male, white, stage:Stage I, alive, 698 days
181.1
TCGA-BC-A69H-01A
64 years, male, white, stage:Stage II, alive, 444 days
177.9
TCGA-DD-AACO-01A
40 years, male, asian, stage:Stage I, alive, 1876 days
170.4
TCGA-DD-AADS-01A
63 years, male, asian, stage:Stage I, alive, 474 days
163.4
TCGA-GJ-A6C0-01A
75 years, female, white, stage:Stage II, dead, 31 days
162.2
TCGA-CC-A123-01A
24 years, female, asian, stage:Stage IIIA, alive, 219 days
158.7
TCGA-5R-AA1D-01A
17 years, female, white, stage:Stage IIIA, alive, 449 days
154.5
TCGA-MR-A8JO-01A
34 years, male, white, stage:Stage I, alive, 330 days
140.9
TCGA-ES-A2HS-01A
80 years, male, white, stage:Stage I, dead, 688 days
137.0
TCGA-CC-A7II-01A
54 years, male, asian, stage:Stage IIIA, alive, 399 days
120.1
TCGA-FV-A4ZP-01A
78 years, male, white, stage:Stage IIIA, dead, 2486 days
108.3
TCGA-DD-AADN-01A
59 years, male, asian, stage:Stage I, alive, 898 days
97.3
TCGA-CC-A3M9-01A
45 years, male, asian, stage:Stage IIIA, dead, 300 days
82.8
TCGA-DD-A3A6-01A
72 years, female, white, stage:Stage II, dead, 3258 days
80.5
TCGA-CC-A7IJ-01A
56 years, male, asian, stage:Stage II, alive, 382 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
1.2
435
Tumor
1.2
425
Tumor
1.1
147
Tumor
1.0
431
Tumor
0.9
615
Tumor
0.9
123
Tumor
0.8
171
Tumor
0.8
445
Tumor
0.8
777
Tumor
0.8
411
Tumor
0.8
135
Tumor
0.8
393
Tumor
0.8
231
Tumor
0.7
741
Tumor
0.6
221
Tumor
0.6
271
Tumor
0.6
361
Tumor
0.6
1021
Tumor
0.6
1025
Tumor
0.6
357
Tumor
0.6
277
Tumor
0.6
387
Tumor
0.6
161
Tumor
0.6
647
Tumor
0.6
257
Tumor
0.6
443
Tumor
0.5
191
Tumor
0.5
451
Tumor
0.5
697
Tumor
0.5
426
Normal
0.5
635
Tumor
0.5
481
Tumor
0.5
911
Tumor
0.5
383
Tumor
0.5
713
Tumor
0.5
665
Tumor
0.5
724
Normal
0.5
427
Tumor
0.5
497
Tumor
0.4
314
Normal
0.4
222
Normal
0.4
977
Tumor
0.4
227
Tumor
0.4
463
Tumor
0.4
327
Tumor
0.4
743
Tumor
0.4
132
Normal
0.4
721
Tumor
0.4
571
Tumor
0.4
527
Tumor
0.3
641
Tumor
0.3
573
Tumor
0.3
567
Tumor
0.3
863
Tumor
0.3
172
Normal
0.3
332
Normal
0.3
125
Tumor
0.3
388
Normal
0.3
515
Tumor
0.3
452
Normal
0.3
313
Tumor
0.3
636
Normal
0.3
196
Normal
0.3
145
Tumor
0.3
127
Tumor
0.3
423
Tumor
0.3
114
Normal
0.3
813
Tumor
0.3
218
Normal
0.3
851
Tumor
0.3
214
Normal
0.3
915
Tumor
0.3
436
Normal
0.2
162
Normal
0.2
648
Normal
0.2
267
Tumor
0.2
414
Normal
0.2
186
Normal
0.2
112
Tumor
0.2
422
Normal
0.2
136
Normal
0.2
217
Tumor
0.2
428
Normal
0.2
433
Tumor
0.2
365
Tumor
0.2
213
Tumor
0.2
278
Normal
0.2
923
Tumor
0.2
185
Tumor
0.2
362
Normal
0.2
258
Normal
0.2
873
Tumor
0.2
394
Normal
0.2
148
Normal
0.2
111
Normal
0.2
298
Normal
0.2
376
Normal
0.2
392
Normal
0.2
415
Tumor
0.2
465
Tumor
0.2
695
Tumor
0.2
616
Normal
0.2
955
Tumor
0.2
715
Tumor
0.2
861
Tumor
0.2
138
Normal
0.1
642
Normal
0.1
187
Tumor
0.1
342
Normal
0.1
358
Normal
0.1
137
Tumor
0.1
1043
Tumor
0.1
424
Normal
0.1
877
Tumor
0.1
487
Tumor
0.1
126
Normal
0.1
464
Normal
0.1
618
Normal
0.1
557
Tumor
0.1
341
Tumor
0.1
867
Tumor
0.1
786
Normal
0.1
568
Normal
0.1
124
Normal
0.1
128
Normal
0.1
466
Normal
0.1
742
Normal
0.1
714
Normal
0.1
564
Normal
0.1
432
Normal
0.1
722
Normal
0.1
366
Normal
0.1
744
Normal
0.1
462
Normal
0.1
368
Normal
0.1
396
Normal
0.1
824
Normal
0.0
312
Normal
0.0
862
Normal
0.0
446
Normal
0.0
354
Normal
0.0
343
Tumor
0.0
351
Tumor
0.0
627
Tumor
0.0
286
Normal
0.0
951
Tumor
0.0
664
Normal
0.0
628
Normal
0.0
386
Normal
0.0
953
Tumor
0.0
483
Tumor
0.0
745
Tumor
0.0
957
Tumor
0.0
914
Normal
0.0
814
Normal
0.0
331
Tumor
0.0
881
Tumor
0.0
938
Normal
0.0
232
Normal
0.0
553
Tumor
0.0
384
Normal
0.0
482
Normal
0.0
352
Normal
0.0
113
Tumor
0.0
737
Tumor
0.0
523
Tumor
0.0
131
Tumor
0.0
878
Normal
0.0
723
Tumor
0.0
468
Normal
0.0
912
Normal
0.0
1022
Normal
0.0
817
Tumor
-0.1
574
Normal
-0.1
188
Normal
-0.1
882
Normal
-0.1
142
Normal
-0.1
728
Normal
-0.1
456
Normal
-0.1
818
Normal
-0.1
738
Normal
-0.1
662
Normal
-0.1
1041
Tumor
-0.1
421
Tumor
-0.1
666
Normal
-0.1
146
Normal
-0.1
572
Normal
-0.1
663
Tumor
-0.1
272
Normal
-0.1
698
Normal
-0.1
1044
Normal
-0.1
268
Normal
-0.1
477
Tumor
-0.1
975
Tumor
-0.1
944
Normal
-0.1
356
Normal
-0.1
563
Tumor
-0.1
746
Normal
-0.1
528
Normal
-0.1
1028
Normal
-0.1
672
Normal
-0.1
868
Normal
-0.1
212
Normal
-0.1
778
Normal
-0.1
816
Normal
-0.1
448
Normal
-0.1
344
Normal
-0.1
686
Normal
-0.1
533
Tumor
-0.1
284
Normal
-0.1
297
Tumor
-0.1
696
Normal
-0.1
864
Normal
-0.1
937
Tumor
-0.1
195
Tumor
-0.1
785
Tumor
-0.2
262
Normal
-0.2
981
Tumor
-0.2
412
Normal
-0.2
228
Normal
-0.2
952
Normal
-0.2
866
Normal
-0.2
954
Normal
-0.2
727
Tumor
-0.2
756
Normal
-0.2
956
Normal
-0.2
141
Tumor
-0.2
488
Normal
-0.2
857
Tumor
-0.2
493
Tumor
-0.2
963
Tumor
-0.2
1031
Tumor
-0.2
416
Normal
-0.2
913
Tumor
-0.2
471
Tumor
-0.2
884
Normal
-0.2
353
Tumor
-0.2
474
Normal
-0.2
1032
Normal
-0.2
491
Tumor
-0.2
671
Tumor
-0.2
525
Tumor
-0.2
1045
Tumor
-0.2
823
Tumor
-0.3
545
Tumor
-0.3
558
Normal
-0.3
534
Normal
-0.3
472
Normal
-0.3
224
Normal
-0.3
375
Tumor
-0.3
461
Tumor
-0.3
858
Normal
-0.3
874
Normal
-0.3
968
Normal
-0.3
1046
Normal
-0.3
1026
Normal
-0.3
192
Normal
-0.3
434
Normal
-0.3
484
Normal
-0.3
261
Tumor
-0.3
964
Normal
-0.3
444
Normal
-0.3
924
Normal
-0.3
921
Tumor
-0.3
328
Normal
-0.3
395
Tumor
-0.3
546
Normal
-0.3
716
Normal
-0.3
364
Normal
-0.3
455
Tumor
-0.3
982
Normal
-0.4
367
Tumor
-0.4
617
Tumor
-0.4
1016
Normal
-0.4
922
Normal
-0.4
883
Tumor
-0.4
852
Normal
-0.4
494
Normal
-0.4
1014
Normal
-0.4
755
Tumor
-0.4
223
Tumor
-0.4
526
Normal
-0.4
363
Tumor
-0.4
513
Tumor
-0.4
958
Normal
-0.4
518
Normal
-0.4
943
Tumor
-0.4
926
Normal
-0.4
978
Normal
-0.4
685
Tumor
-0.4
355
Tumor
-0.4
976
Normal
-0.4
478
Normal
-0.4
517
Tumor
-0.5
514
Normal
-0.5
554
Normal
-0.5
1013
Tumor
-0.5
1015
Tumor
-0.5
385
Tumor
-0.5
467
Tumor
-0.5
537
Tumor
-0.5
925
Tumor
-0.5
966
Normal
-0.5
865
Tumor
-0.5
498
Normal
-0.5
516
Normal
-0.5
916
Normal
-0.6
391
Tumor
-0.6
965
Tumor
-0.6
447
Tumor
-0.6
918
Normal
-0.6
473
Tumor
-0.6
538
Normal
-0.6
984
Normal
-0.6
283
Tumor
-0.6
1042
Normal
-0.7
524
Normal
-0.7
492
Normal
-0.7
536
Normal
-0.7
413
Tumor
-0.7
967
Tumor
-0.7
983
Tumor
-0.8
311
Tumor
-0.8
661
Tumor
-0.9
285
Tumor
-0.9
815
Tumor
-0.9
917
Tumor
-1.1
211
Tumor
-1.5
535
Tumor
-1.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.