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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SELENBP1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
131.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
762.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
647.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
639.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
631.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
609.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
532.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
522.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
466.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
457.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
456.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
431.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
417.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
395.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
388.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
381.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
380.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
377.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
377.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
366.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
366.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
353.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
350.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
338.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
337.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
331.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
331.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
328.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
327.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
324.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
320.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
318.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
306.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
303.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
296.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
295.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
280.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
279.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
270.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
267.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
265.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
258.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
257.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
256.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
253.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
247.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
242.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
238.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
237.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
230.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
229.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
226.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
224.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
222.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
222.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
218.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
215.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
213.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
211.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
211.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
208.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
207.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
207.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
206.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
204.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
200.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
197.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
197.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
195.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
194.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
193.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
189.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
187.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
184.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
183.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
182.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
180.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
179.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
178.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
177.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
172.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
172.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
169.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
167.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
167.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
163.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
161.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
160.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
160.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
159.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
158.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
155.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
151.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
151.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
150.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
149.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
149.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
148.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
147.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
146.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
145.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
144.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
143.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
143.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
142.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
142.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
142.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
141.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
141.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
140.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
138.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
137.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
136.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
136.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
136.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
136.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
134.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
134.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
134.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
133.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
132.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
132.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
131.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
130.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
130.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
129.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
127.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
126.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
125.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
125.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
125.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
124.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
124.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
124.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
124.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
122.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
122.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
122.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
121.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
121.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
120.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
119.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
119.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
119.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
117.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
117.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
117.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
116.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
116.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
115.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
115.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
114.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
113.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
113.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
112.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
112.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
111.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
111.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
109.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
108.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
107.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
107.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
106.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
106.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
105.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
105.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
105.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
104.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
103.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
102.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
102.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
102.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
102.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
101.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
101.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
101.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
101.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
100.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
99.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
97.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
97.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
96.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
95.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
95.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
94.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
94.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
94.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
94.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
94.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
94.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
94.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
94.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
93.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
93.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
93.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
92.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
92.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
92.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
90.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
90.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
90.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
89.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
89.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
89.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
88.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
87.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
87.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
86.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
85.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
85.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
85.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
84.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
84.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
83.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
83.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
82.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
82.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
81.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
81.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
81.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
81.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
81.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
81.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
81.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
81.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
78.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
78.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
77.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
77.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
77.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
77.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
76.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
76.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
76.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
75.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
75.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
74.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
74.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
74.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
73.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
73.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
73.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
72.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
72.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
72.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
71.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
70.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
70.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
70.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
70.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
69.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
69.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
68.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
68.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
67.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
66.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
66.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
66.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
66.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
65.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
65.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
64.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
64.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
63.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
62.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
61.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
61.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
60.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
59.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
59.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
59.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
58.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
57.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
57.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
57.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
56.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
56.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
56.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
56.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
56.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
56.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
56.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
54.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
54.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
53.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
53.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
53.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
53.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
52.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
52.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
52.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
52.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
51.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
51.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
50.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
50.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
49.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
49.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
47.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
47.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
46.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
45.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
45.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
44.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
44.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
44.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
43.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
43.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
42.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
41.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
41.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
41.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
40.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
39.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
39.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
38.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
38.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
37.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
37.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
36.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
35.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
35.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
35.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
34.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
34.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
34.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
33.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
32.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
32.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
32.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
31.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
30.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
30.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
30.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
29.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
29.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
29.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
28.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
28.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
26.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
24.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
24.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
23.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
22.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
19.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
19.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
18.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
15.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
14.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
11.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
7.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
6.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
6.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
5.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
3.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
2.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SELENBP1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
139.6
Number of samples
231
Samples
Sample
Description
TPM
DO48677
0 years, male, NA, stage:3, alive, 1140 days
807.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
606.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
593.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
589.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
478.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
466.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
461.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
460.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
456.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
369.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
360.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
350.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
347.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
346.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
343.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
331.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
328.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
328.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
327.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
301.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
299.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
293.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
289.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
287.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
285.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
280.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
275.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
267.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
266.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
264.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
264.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
258.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
254.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
252.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
236.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
235.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
230.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
227.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
223.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
222.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
221.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
220.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
219.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
219.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
213.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
212.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
207.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
207.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
206.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
205.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
199.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
199.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
199.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
199.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
198.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
197.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
193.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
191.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
191.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
185.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
183.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
181.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
180.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
175.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
168.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
168.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
167.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
166.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
163.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
162.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
160.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
159.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
158.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
158.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
158.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
157.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
157.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
155.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
155.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
151.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
150.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
149.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
149.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
146.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
143.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
139.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
134.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
133.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
132.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
131.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
131.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
130.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
130.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
129.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
127.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
126.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
125.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
124.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
124.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
124.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
122.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
120.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
120.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
118.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
115.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
114.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
113.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
112.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
112.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
106.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
105.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
105.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
105.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
105.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
103.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
101.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
101.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
100.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
99.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
99.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
99.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
98.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
97.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
97.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
97.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
96.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
96.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
95.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
92.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
91.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
91.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
90.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
90.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
90.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
89.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
86.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
85.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
84.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
84.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
84.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
82.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
81.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
81.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
80.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
76.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
76.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
76.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
75.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
75.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
74.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
74.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
74.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
73.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
72.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
72.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
70.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
70.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
68.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
68.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
66.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
66.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
66.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
66.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
63.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
62.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
61.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
61.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
60.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
59.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
58.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
57.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
57.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
57.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
56.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
54.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
54.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
53.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
51.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
51.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
51.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
51.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
51.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
50.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
50.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
49.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
49.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
48.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
48.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
48.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
47.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
47.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
47.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
46.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
43.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
43.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
42.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
42.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
42.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
41.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
39.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
39.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
38.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
33.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
33.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
33.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
32.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
31.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
30.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
30.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
30.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
28.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
26.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
26.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
26.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
24.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
23.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
22.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
21.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
21.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
20.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
18.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
17.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
17.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
9.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
8.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
5.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
2.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
915
Tumor
1.2
955
Tumor
1.1
618
Normal
1.1
867
Tumor
1.1
222
Normal
1.0
481
Tumor
1.0
515
Tumor
1.0
911
Tumor
0.9
196
Normal
0.9
436
Normal
0.9
648
Normal
0.8
342
Normal
0.8
698
Normal
0.8
714
Normal
0.8
298
Normal
0.8
462
Normal
0.8
414
Normal
0.8
482
Normal
0.8
862
Normal
0.8
742
Normal
0.7
432
Normal
0.7
518
Normal
0.7
746
Normal
0.7
451
Tumor
0.7
111
Normal
0.7
132
Normal
0.7
162
Normal
0.7
824
Normal
0.7
878
Normal
0.7
484
Normal
0.7
882
Normal
0.7
568
Normal
0.7
422
Normal
0.7
464
Normal
0.7
172
Normal
0.7
744
Normal
0.7
426
Normal
0.7
148
Normal
0.7
786
Normal
0.7
472
Normal
0.7
664
Normal
0.7
546
Normal
0.7
314
Normal
0.6
261
Tumor
0.6
956
Normal
0.6
938
Normal
0.6
756
Normal
0.6
1046
Normal
0.6
366
Normal
0.6
723
Tumor
0.6
534
Normal
0.6
964
Normal
0.6
818
Normal
0.6
1016
Normal
0.6
332
Normal
0.6
394
Normal
0.6
128
Normal
0.6
616
Normal
0.6
866
Normal
0.6
186
Normal
0.6
356
Normal
0.6
272
Normal
0.6
358
Normal
0.6
388
Normal
0.6
858
Normal
0.5
428
Normal
0.5
286
Normal
0.5
628
Normal
0.5
738
Normal
0.5
1026
Normal
0.5
258
Normal
0.5
944
Normal
0.5
642
Normal
0.5
912
Normal
0.5
666
Normal
0.5
448
Normal
0.5
864
Normal
0.5
278
Normal
0.5
114
Normal
0.5
952
Normal
0.5
695
Tumor
0.5
982
Normal
0.5
376
Normal
0.5
564
Normal
0.5
452
Normal
0.5
416
Normal
0.5
884
Normal
0.5
136
Normal
0.5
1022
Normal
0.5
412
Normal
0.5
396
Normal
0.5
662
Normal
0.5
446
Normal
0.5
424
Normal
0.5
456
Normal
0.4
914
Normal
0.4
977
Tumor
0.4
572
Normal
0.4
362
Normal
0.4
728
Normal
0.4
365
Tumor
0.4
214
Normal
0.4
232
Normal
0.4
922
Normal
0.4
1032
Normal
0.4
138
Normal
0.4
868
Normal
0.4
861
Tumor
0.4
874
Normal
0.4
218
Normal
0.4
386
Normal
0.4
696
Normal
0.4
468
Normal
0.4
741
Tumor
0.4
722
Normal
0.4
526
Normal
0.4
466
Normal
0.4
514
Normal
0.4
966
Normal
0.4
392
Normal
0.4
924
Normal
0.4
716
Normal
0.4
816
Normal
0.4
636
Normal
0.4
574
Normal
0.4
352
Normal
0.4
926
Normal
0.4
918
Normal
0.4
528
Normal
0.3
976
Normal
0.3
558
Normal
0.3
146
Normal
0.3
513
Tumor
0.3
364
Normal
0.3
554
Normal
0.3
1044
Normal
0.3
488
Normal
0.3
474
Normal
0.3
228
Normal
0.3
312
Normal
0.3
354
Normal
0.3
262
Normal
0.3
1014
Normal
0.3
778
Normal
0.3
516
Normal
0.3
954
Normal
0.2
212
Normal
0.2
368
Normal
0.2
968
Normal
0.2
627
Tumor
0.2
984
Normal
0.2
686
Normal
0.2
958
Normal
0.2
1042
Normal
0.2
142
Normal
0.2
344
Normal
0.2
978
Normal
0.2
171
Tumor
0.2
1028
Normal
0.2
188
Normal
0.2
126
Normal
0.2
328
Normal
0.1
852
Normal
0.1
423
Tumor
0.1
361
Tumor
0.1
1043
Tumor
0.1
981
Tumor
0.1
1041
Tumor
0.1
192
Normal
0.1
434
Normal
0.1
327
Tumor
0.1
863
Tumor
0.1
445
Tumor
0.1
494
Normal
0.1
147
Tumor
0.1
672
Normal
0.0
161
Tumor
0.0
615
Tumor
0.0
777
Tumor
0.0
461
Tumor
0.0
268
Normal
0.0
284
Normal
0.0
124
Normal
0.0
727
Tumor
0.0
477
Tumor
0.0
916
Normal
0.0
1027
Tumor
0.0
384
Normal
0.0
415
Tumor
0.0
224
Normal
-0.1
785
Tumor
-0.1
538
Normal
-0.1
431
Tumor
-0.1
195
Tumor
-0.1
533
Tumor
-0.1
444
Normal
-0.1
137
Tumor
-0.1
435
Tumor
-0.1
721
Tumor
-0.2
745
Tumor
-0.2
523
Tumor
-0.2
487
Tumor
-0.2
737
Tumor
-0.2
141
Tumor
-0.2
715
Tumor
-0.2
498
Normal
-0.2
131
Tumor
-0.2
393
Tumor
-0.2
492
Normal
-0.3
557
Tumor
-0.3
517
Tumor
-0.3
663
Tumor
-0.3
231
Tumor
-0.3
478
Normal
-0.3
433
Tumor
-0.3
217
Tumor
-0.3
524
Normal
-0.3
357
Tumor
-0.3
857
Tumor
-0.4
271
Tumor
-0.4
813
Tumor
-0.4
123
Tumor
-0.4
425
Tumor
-0.4
553
Tumor
-0.4
685
Tumor
-0.4
921
Tumor
-0.4
963
Tumor
-0.5
465
Tumor
-0.5
814
Normal
-0.5
1025
Tumor
-0.5
267
Tumor
-0.5
1015
Tumor
-0.5
873
Tumor
-0.5
112
Tumor
-0.5
353
Tumor
-0.6
571
Tumor
-0.6
493
Tumor
-0.6
383
Tumor
-0.6
257
Tumor
-0.6
471
Tumor
-0.6
617
Tumor
-0.6
277
Tumor
-0.6
127
Tumor
-0.6
755
Tumor
-0.6
145
Tumor
-0.6
536
Normal
-0.6
953
Tumor
-0.6
185
Tumor
-0.7
563
Tumor
-0.7
527
Tumor
-0.7
1045
Tumor
-0.7
937
Tumor
-0.7
341
Tumor
-0.7
881
Tumor
-0.7
1031
Tumor
-0.7
975
Tumor
-0.7
865
Tumor
-0.8
665
Tumor
-0.8
421
Tumor
-0.8
187
Tumor
-0.8
113
Tumor
-0.8
443
Tumor
-0.8
213
Tumor
-0.8
823
Tumor
-0.8
191
Tumor
-0.8
647
Tumor
-0.8
297
Tumor
-0.8
943
Tumor
-0.8
483
Tumor
-0.8
877
Tumor
-0.8
525
Tumor
-0.8
883
Tumor
-0.8
221
Tumor
-0.8
917
Tumor
-0.9
411
Tumor
-0.9
1021
Tumor
-0.9
635
Tumor
-0.9
641
Tumor
-0.9
447
Tumor
-0.9
391
Tumor
-0.9
957
Tumor
-0.9
227
Tumor
-0.9
1013
Tumor
-0.9
713
Tumor
-0.9
545
Tumor
-1.0
923
Tumor
-1.0
567
Tumor
-1.0
313
Tumor
-1.0
473
Tumor
-1.0
491
Tumor
-1.0
355
Tumor
-1.1
135
Tumor
-1.1
343
Tumor
-1.1
697
Tumor
-1.1
387
Tumor
-1.1
463
Tumor
-1.1
913
Tumor
-1.1
427
Tumor
-1.1
497
Tumor
-1.2
363
Tumor
-1.2
413
Tumor
-1.2
925
Tumor
-1.2
455
Tumor
-1.2
965
Tumor
-1.2
223
Tumor
-1.2
467
Tumor
-1.3
967
Tumor
-1.3
951
Tumor
-1.3
311
Tumor
-1.3
743
Tumor
-1.3
351
Tumor
-1.3
983
Tumor
-1.4
331
Tumor
-1.4
815
Tumor
-1.4
573
Tumor
-1.4
851
Tumor
-1.4
125
Tumor
-1.5
817
Tumor
-1.5
367
Tumor
-1.5
671
Tumor
-1.5
724
Normal
-1.5
375
Tumor
-1.5
395
Tumor
-1.6
537
Tumor
-1.7
283
Tumor
-1.7
385
Tumor
-1.8
285
Tumor
-1.8
211
Tumor
-2.0
661
Tumor
-2.1
535
Tumor
-2.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.