MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.3 nTPM
HPA Brain:61.9 nTPM
GTEx:18.3 nTPM
FANTOM5:88.0 Scaled Tags Per Million
Pig:61.6 nTPM
Mouse:64.4 nTPM
Allen mouse:5.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 61.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 58.2
1833 Male, age 53, unknown 63.2
2586 Male, age 75, left hemisphere 63.1
2666 Male, age 74, left hemisphere 62.4
2019 Male, age 18, unknown 60.2
1830 Male, age 51, unknown 59.8
2411 Female, age 72, unknown 57.4
1870 Female, age 42, unknown 57.2
2219 Male, age 76, both hemispheres 56.0
1827 Male, age 72, unknown 52.1
2828 Female, age 72, unknown 51.1
Dorsal raphe nucleus
nTPM: 55.3
1828 Male, age 53, unknown 61.3
2016 Female, age 72, unknown 56.0
2047 Male, age 72, unknown 54.6
2750 Male, age 76, both hemispheres 53.2
2298 Female, age 72, unknown 51.4
Inferior colliculus
nTPM: 57.9
1848 Female, age 42, unknown 60.6
2849 Male, age 72, unknown 58.0
2097 Female, age 72, unknown 57.0
1890 Male, age 53, unknown 56.0
Median raphe nucleus
nTPM: 52.3
2220 Male, age 76, midline 52.3
Periaquaductal grey, anterior
nTPM: 51.4
2502 Female, age 75, unknown 57.3
1947 Male, age 18, unknown 51.5
1795 Male, age 51, unknown 45.4
Periaquaductal grey, dorsal
nTPM: 50.1
2464 Female, age 72, unknown 55.5
1840 Male, age 53, unknown 51.9
1831 Male, age 72, unknown 48.7
2850 Male, age 76, both hemispheres 44.3
Periaquaductal grey, lateral
nTPM: 45.0
2053 Male, age 18, unknown 47.7
2140 Male, age 76, both hemispheres 44.1
2272 Male, age 74, both hemispheres 43.1
Pretectal area
nTPM: 52.0
1944 Female, age 72, unknown 55.7
2007 Male, age 72, unknown 55.7
1817 Female, age 42, unknown 55.4
1815 Male, age 53, unknown 54.8
2825 Male, age 18, unknown 54.3
2407 Male, age 75, both hemispheres 54.1
1816 Male, age 51, unknown 53.2
2316 Male, age 76, right hemisphere 50.6
2224 Female, age 72, unknown 48.1
2667 Female, age 75, unknown 47.4
2273 Male, age 74, both hemispheres 42.8
Red nucleus
nTPM: 59.2
1821 Female, age 72, unknown 69.6
2769 Male, age 72, unknown 61.5
2227 Male, age 72, unknown 60.7
2503 Female, age 72, unknown 60.5
1954 Female, age 42, unknown 59.7
2584 Male, age 75, left hemisphere 58.7
2588 Male, age 74, left hemisphere 58.5
1865 Male, age 51, unknown 58.0
1904 Male, age 53, unknown 57.6
2785 Male, age 18, unknown 56.2
2823 Male, age 76, right hemisphere 55.3
2725 Female, age 75, unknown 53.6
Substantia nigra
nTPM: 61.9
2241 Male, age 72, unknown 72.5
1916 Female, age 42, unknown 68.9
1941 Male, age 53, unknown 63.9
1851 Male, age 51, unknown 62.1
1889 Female, age 72, unknown 60.5
2699 Male, age 18, unknown 60.5
2665 Male, age 74, both hemispheres 60.3
2409 Female, age 72, unknown 58.2
2590 Female, age 75, unknown 56.2
2583 Male, age 75, right hemisphere 56.1
Superior colliculus
nTPM: 54.3
2668 Female, age 75, unknown 63.8
2664 Male, age 75, both hemispheres 59.8
1839 Male, age 51, unknown 59.5
1895 Male, age 76, right hemisphere 59.3
2087 Female, age 72, unknown 53.6
2587 Male, age 74, left hemisphere 53.3
1913 Female, age 42, unknown 49.9
2261 Male, age 18, unknown 49.9
1796 Male, age 53, unknown 47.6
1995 Male, age 72, unknown 46.0
Ventral tegmental area
nTPM: 55.4
2410 Female, age 72, unknown 62.5
1915 Female, age 42, unknown 59.1
2218 Male, age 76, both hemispheres 57.3
1942 Male, age 51, unknown 54.0
2223 Female, age 72, unknown 51.1
2021 Male, age 53, unknown 48.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 18.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.3
Samples: 139

Max nTPM: 25.8
Min nTPM: 10.6
Std nTPM: 2.6
Median nTPM: 18.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 25.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 24.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 24.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 23.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 23.3
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 23.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 22.8
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 22.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 22.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 22.1
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 21.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 88.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 88.0
FF:10158-103A5 76 years, female 88.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 61.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 58.3
Samples: 4

Max nTPM: 64.3
Min nTPM: 49.7
Sample A Female 61.7
Sample B Female 49.7
Sample C Male 57.3
Sample D Male 64.3
Midbrain
nTPM: 61.6
Samples: 4

Max nTPM: 74.3
Min nTPM: 50.7
Sample A Female 74.3
Sample B Female 62.7
Sample C Male 50.7
Sample D Male 58.7
Periaqueductal gray
nTPM: 52.9
Samples: 3

Max nTPM: 57.1
Min nTPM: 50.0
Sample B Female 57.1
Sample C Male 51.6
Sample D Male 50.0
Superior colliculi
nTPM: 57.3
Samples: 4

Max nTPM: 65.0
Min nTPM: 41.0
Sample A Female 65.0
Sample B Female 41.0
Sample C Male 58.7
Sample D Male 64.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 64.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 64.5
Samples: 4

Max nTPM: 70.6
Min nTPM: 54.9
Sample A Male 54.9
Sample B Male 68.3
Sample C Female 70.6
Sample D Female 64.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.0
72002038 Antisense, RP_050915_02_F05, Mouse strain C57BL/6J (56 days, male) 6.2
70812954 Antisense, RP_050712_02_H05, Mouse strain C57BL/6J (56 days, male) 3.8

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