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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TARS2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
89.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
59.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
51.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
51.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
50.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
50.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
48.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
45.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
42.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
40.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
40.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
40.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
38.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
36.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
36.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
35.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
35.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
34.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
34.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
33.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
32.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
32.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
31.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
31.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
31.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
30.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
30.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
30.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
30.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
30.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
29.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
29.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
29.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
29.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
29.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
28.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
27.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
27.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
27.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
27.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
27.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
27.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
26.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
26.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
26.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
26.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
26.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
25.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
25.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
25.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
25.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
25.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
25.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
25.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
25.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
25.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
25.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
25.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
25.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
24.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
24.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
24.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
24.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
24.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
24.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
24.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
24.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
24.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
23.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
23.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
23.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
23.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
23.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
23.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
23.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
23.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
22.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
22.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
22.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
22.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
22.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
22.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
22.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
22.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
22.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
22.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
22.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
22.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
21.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
21.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
21.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
21.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
21.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
21.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
21.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
21.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
21.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
21.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
21.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
21.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
21.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
21.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
21.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
21.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
20.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
20.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
20.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
20.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
20.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
20.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
20.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
20.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
20.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
20.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
20.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
20.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
20.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
20.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
20.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
20.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
20.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
20.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
20.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
20.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
20.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
19.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
19.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
19.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
19.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
19.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
19.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
19.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
19.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
19.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
19.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
19.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
19.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
18.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
18.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
18.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
18.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
18.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
18.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
18.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
18.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
18.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
18.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
18.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
18.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
17.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
17.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
17.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
17.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
17.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
17.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
17.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
17.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
17.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
17.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
16.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
16.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
16.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
15.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
15.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
15.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
15.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
15.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
15.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
15.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
15.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
15.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
14.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
14.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
14.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
14.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
14.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
14.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
14.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
14.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
14.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
14.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
14.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
14.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
14.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
13.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
13.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
13.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
13.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
13.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
13.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
13.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
13.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
13.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
13.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
13.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
13.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
12.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
12.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
12.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
12.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
12.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
12.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
12.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
12.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
12.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
11.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
11.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
11.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
11.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
11.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
10.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
10.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
10.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
10.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
10.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
10.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
10.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
10.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
9.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
9.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
9.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
9.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
9.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
8.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
7.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TARS2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.7
Number of samples
231
Samples
Sample
Description
TPM
DO23525
0 years, male, NA, stage:4, alive, 1050 days
51.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
48.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
46.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
45.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
45.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
43.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
40.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
37.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
36.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
36.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
35.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
33.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
33.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
33.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
32.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
32.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
31.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
30.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
30.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
29.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
29.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
28.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
28.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
28.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
28.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
26.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
25.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
25.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
25.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
25.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
24.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
24.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
24.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
23.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
23.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
23.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
23.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
23.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
23.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
23.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
22.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
22.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
22.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
22.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
22.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
21.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
21.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
21.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
21.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
21.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
21.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
21.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
21.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
21.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
21.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
20.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
20.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
20.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
20.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
19.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
19.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
19.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
19.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
19.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
19.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
19.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
19.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
19.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
19.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
19.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
19.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
18.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
18.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
18.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
18.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
18.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
18.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
17.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
17.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
17.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
17.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
17.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
16.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
16.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
16.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
16.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
16.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
16.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
16.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
16.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
15.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
15.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
15.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
15.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
15.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
15.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
15.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
15.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
15.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
15.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
15.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
15.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
14.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
14.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
14.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
14.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
14.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
14.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
14.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
14.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
14.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
14.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
14.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
14.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
14.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
14.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
13.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
13.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
13.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
13.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
13.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
13.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
13.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
13.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
13.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
13.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
12.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
12.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
12.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
12.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
12.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
12.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
12.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
12.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
11.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
11.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
11.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
11.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
11.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
11.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
11.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
11.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
10.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
10.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
10.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
9.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
9.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
9.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
9.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
8.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
7.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
7.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
6.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
6.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
6.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
6.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
6.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
477
Tumor
1.5
487
Tumor
1.4
383
Tumor
1.3
123
Tumor
1.3
571
Tumor
1.3
431
Tumor
1.1
443
Tumor
1.1
695
Tumor
1.0
1041
Tumor
0.9
231
Tumor
0.9
873
Tumor
0.9
977
Tumor
0.8
525
Tumor
0.8
161
Tumor
0.8
567
Tumor
0.8
642
Normal
0.7
1013
Tumor
0.7
865
Tumor
0.7
925
Tumor
0.7
411
Tumor
0.7
393
Tumor
0.7
957
Tumor
0.7
112
Tumor
0.6
427
Tumor
0.6
191
Tumor
0.6
357
Tumor
0.6
665
Tumor
0.6
465
Tumor
0.5
425
Tumor
0.5
883
Tumor
0.5
135
Tumor
0.5
145
Tumor
0.5
267
Tumor
0.5
911
Tumor
0.5
361
Tumor
0.4
313
Tumor
0.4
171
Tumor
0.4
277
Tumor
0.4
423
Tumor
0.4
915
Tumor
0.4
663
Tumor
0.4
823
Tumor
0.4
953
Tumor
0.3
435
Tumor
0.3
635
Tumor
0.3
824
Normal
0.3
358
Normal
0.3
724
Normal
0.3
213
Tumor
0.3
387
Tumor
0.2
445
Tumor
0.2
342
Normal
0.2
132
Normal
0.2
537
Tumor
0.2
384
Normal
0.2
351
Tumor
0.2
497
Tumor
0.2
861
Tumor
0.2
491
Tumor
0.2
1021
Tumor
0.2
721
Tumor
0.2
421
Tumor
0.2
981
Tumor
0.2
185
Tumor
0.2
756
Normal
0.2
572
Normal
0.2
341
Tumor
0.2
636
Normal
0.2
727
Tumor
0.1
127
Tumor
0.1
786
Normal
0.1
483
Tumor
0.1
723
Tumor
0.1
137
Tumor
0.1
1043
Tumor
0.1
432
Normal
0.1
327
Tumor
0.1
527
Tumor
0.1
451
Tumor
0.1
278
Normal
0.1
951
Tumor
0.1
952
Normal
0.1
864
Normal
0.1
468
Normal
0.1
627
Tumor
0.1
113
Tumor
0.1
195
Tumor
0.1
533
Tumor
0.1
221
Tumor
0.1
755
Tumor
0.1
563
Tumor
0.0
424
Normal
0.0
954
Normal
0.0
741
Tumor
0.0
557
Tumor
0.0
488
Normal
0.0
367
Tumor
0.0
745
Tumor
0.0
214
Normal
0.0
227
Tumor
0.0
392
Normal
0.0
867
Tumor
0.0
148
Normal
0.0
813
Tumor
0.0
1045
Tumor
0.0
574
Normal
0.0
874
Normal
0.0
128
Normal
0.0
172
Normal
0.0
778
Normal
0.0
696
Normal
0.0
388
Normal
0.0
147
Tumor
0.0
196
Normal
0.0
564
Normal
0.0
298
Normal
0.0
983
Tumor
0.0
558
Normal
0.0
648
Normal
0.0
647
Tumor
0.0
568
Normal
0.0
452
Normal
0.0
744
Normal
-0.1
114
Normal
-0.1
124
Normal
-0.1
1027
Tumor
-0.1
478
Normal
-0.1
232
Normal
-0.1
526
Normal
-0.1
394
Normal
-0.1
534
Normal
-0.1
162
Normal
-0.1
186
Normal
-0.1
937
Tumor
-0.1
715
Tumor
-0.1
355
Tumor
-0.1
641
Tumor
-0.1
1014
Normal
-0.1
187
Tumor
-0.1
528
Normal
-0.1
1022
Normal
-0.1
261
Tumor
-0.1
857
Tumor
-0.1
436
Normal
-0.1
446
Normal
-0.1
444
Normal
-0.1
698
Normal
-0.1
433
Tumor
-0.1
924
Normal
-0.1
391
Tumor
-0.1
426
Normal
-0.1
912
Normal
-0.1
314
Normal
-0.1
515
Tumor
-0.1
878
Normal
-0.1
1032
Normal
-0.1
353
Tumor
-0.1
376
Normal
-0.1
484
Normal
-0.2
513
Tumor
-0.2
141
Tumor
-0.2
554
Normal
-0.2
328
Normal
-0.2
742
Normal
-0.2
785
Tumor
-0.2
944
Normal
-0.2
142
Normal
-0.2
923
Tumor
-0.2
738
Normal
-0.2
662
Normal
-0.2
366
Normal
-0.2
222
Normal
-0.2
868
Normal
-0.2
354
Normal
-0.2
218
Normal
-0.2
1026
Normal
-0.2
422
Normal
-0.2
494
Normal
-0.2
456
Normal
-0.2
368
Normal
-0.2
473
Tumor
-0.2
415
Tumor
-0.2
352
Normal
-0.2
978
Normal
-0.2
1028
Normal
-0.2
618
Normal
-0.2
434
Normal
-0.2
858
Normal
-0.2
332
Normal
-0.2
284
Normal
-0.2
356
Normal
-0.2
968
Normal
-0.2
616
Normal
-0.2
131
Tumor
-0.2
615
Tumor
-0.2
428
Normal
-0.2
414
Normal
-0.2
1031
Tumor
-0.2
938
Normal
-0.2
984
Normal
-0.2
777
Tumor
-0.2
228
Normal
-0.2
546
Normal
-0.2
363
Tumor
-0.2
722
Normal
-0.2
474
Normal
-0.2
666
Normal
-0.2
538
Normal
-0.3
365
Tumor
-0.3
714
Normal
-0.3
545
Tumor
-0.3
111
Normal
-0.3
913
Tumor
-0.3
217
Tumor
-0.3
1046
Normal
-0.3
462
Normal
-0.3
492
Normal
-0.3
448
Normal
-0.3
412
Normal
-0.3
286
Normal
-0.3
686
Normal
-0.3
481
Tumor
-0.3
1016
Normal
-0.3
364
Normal
-0.3
138
Normal
-0.3
514
Normal
-0.3
518
Normal
-0.3
862
Normal
-0.3
955
Tumor
-0.3
297
Tumor
-0.3
866
Normal
-0.3
818
Normal
-0.3
967
Tumor
-0.3
851
Tumor
-0.3
697
Tumor
-0.3
524
Normal
-0.3
628
Normal
-0.3
728
Normal
-0.3
1044
Normal
-0.3
466
Normal
-0.3
664
Normal
-0.3
1025
Tumor
-0.3
816
Normal
-0.3
926
Normal
-0.3
877
Tumor
-0.3
396
Normal
-0.3
386
Normal
-0.3
375
Tumor
-0.3
918
Normal
-0.3
272
Normal
-0.3
661
Tumor
-0.3
746
Normal
-0.3
461
Tumor
-0.3
965
Tumor
-0.3
262
Normal
-0.4
975
Tumor
-0.4
922
Normal
-0.4
331
Tumor
-0.4
672
Normal
-0.4
685
Tumor
-0.4
188
Normal
-0.4
464
Normal
-0.4
146
Normal
-0.4
136
Normal
-0.4
312
Normal
-0.4
268
Normal
-0.4
212
Normal
-0.4
958
Normal
-0.4
517
Tumor
-0.4
362
Normal
-0.4
956
Normal
-0.4
258
Normal
-0.4
982
Normal
-0.4
523
Tumor
-0.4
471
Tumor
-0.4
482
Normal
-0.4
224
Normal
-0.4
344
Normal
-0.4
463
Tumor
-0.4
395
Tumor
-0.4
914
Normal
-0.4
882
Normal
-0.4
976
Normal
-0.4
516
Normal
-0.4
416
Normal
-0.4
125
Tumor
-0.4
573
Tumor
-0.4
472
Normal
-0.5
498
Normal
-0.5
716
Normal
-0.5
852
Normal
-0.5
964
Normal
-0.5
447
Tumor
-0.5
916
Normal
-0.5
1015
Tumor
-0.5
713
Tumor
-0.5
884
Normal
-0.5
737
Tumor
-0.5
126
Normal
-0.5
493
Tumor
-0.5
467
Tumor
-0.5
1042
Normal
-0.5
553
Tumor
-0.5
385
Tumor
-0.5
617
Tumor
-0.5
921
Tumor
-0.6
671
Tumor
-0.6
257
Tumor
-0.6
966
Normal
-0.6
743
Tumor
-0.6
192
Normal
-0.6
413
Tumor
-0.6
223
Tumor
-0.6
455
Tumor
-0.6
285
Tumor
-0.6
211
Tumor
-0.6
815
Tumor
-0.6
863
Tumor
-0.7
943
Tumor
-0.7
963
Tumor
-0.7
283
Tumor
-0.7
814
Normal
-0.7
917
Tumor
-0.7
881
Tumor
-0.7
536
Normal
-0.7
311
Tumor
-0.8
271
Tumor
-0.8
535
Tumor
-0.9
343
Tumor
-0.9
817
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
