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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SF3B4 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
59.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
290.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
245.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
231.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
201.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
195.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
191.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
185.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
178.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
164.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
158.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
155.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
154.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
151.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
150.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
149.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
148.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
145.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
144.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
143.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
136.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
134.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
133.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
130.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
126.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
122.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
119.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
118.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
113.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
111.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
110.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
109.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
108.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
107.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
106.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
103.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
103.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
102.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
102.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
101.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
100.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
100.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
99.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
97.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
94.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
92.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
92.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
91.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
91.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
89.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
89.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
88.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
87.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
86.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
85.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
85.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
84.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
83.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
83.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
82.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
82.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
82.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
82.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
82.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
81.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
79.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
79.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
78.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
78.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
78.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
78.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
77.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
77.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
77.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
77.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
77.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
76.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
76.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
76.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
75.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
75.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
74.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
74.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
73.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
73.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
73.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
72.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
72.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
71.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
71.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
71.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
71.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
71.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
71.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
70.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
70.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
70.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
70.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
69.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
69.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
69.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
68.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
67.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
67.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
67.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
67.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
67.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
67.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
66.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
65.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
65.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
65.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
64.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
64.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
64.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
64.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
64.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
64.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
64.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
64.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
63.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
63.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
63.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
62.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
62.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
62.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
62.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
62.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
61.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
61.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
61.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
61.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
61.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
61.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
60.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
60.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
60.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
60.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
59.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
59.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
59.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
58.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
58.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
58.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
57.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
57.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
57.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
57.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
57.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
56.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
56.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
55.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
55.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
55.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
55.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
55.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
54.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
54.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
54.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
53.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
53.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
52.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
52.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
52.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
52.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
51.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
51.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
51.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
51.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
51.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
51.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
51.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
51.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
50.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
50.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
50.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
50.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
50.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
50.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
49.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
49.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
49.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
49.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
49.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
48.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
48.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
48.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
48.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
48.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
48.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
47.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
47.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
47.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
47.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
47.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
47.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
47.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
46.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
46.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
46.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
46.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
46.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
45.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
45.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
45.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
45.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
45.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
45.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
45.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
45.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
44.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
44.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
44.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
44.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
44.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
43.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
43.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
43.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
43.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
43.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
43.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
43.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
43.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
43.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
43.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
43.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
43.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
43.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
43.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
43.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
43.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
43.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
42.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
42.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
42.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
42.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
42.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
41.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
41.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
41.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
41.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
41.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
40.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
40.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
40.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
39.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
39.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
39.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
39.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
39.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
39.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
38.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
38.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
38.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
38.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
37.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
37.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
37.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
37.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
37.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
37.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
37.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
37.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
37.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
36.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
36.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
36.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
36.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
35.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
35.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
35.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
35.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
34.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
34.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
34.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
34.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
34.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
34.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
33.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
33.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
33.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
33.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
33.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
33.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
33.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
33.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
32.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
32.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
31.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
31.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
31.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
31.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
30.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
29.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
29.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
29.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
28.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
28.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
28.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
28.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
28.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
28.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
28.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
28.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
28.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
27.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
27.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
26.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
26.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
26.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
26.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
26.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
26.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
26.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
25.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
25.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
25.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
25.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
25.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
25.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
24.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
24.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
24.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
24.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
24.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
23.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
23.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
23.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
23.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
23.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
23.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
23.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
23.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
23.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
22.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
22.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
21.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
21.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
21.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
20.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
20.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
20.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
19.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
19.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
18.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
18.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
17.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
17.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
17.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
17.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
16.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
16.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
16.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
16.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
15.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
15.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
14.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
13.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
13.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
12.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
11.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SF3B4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
35.4
Number of samples
231
Samples
Sample
Description
TPM
DO45249
0 years, male, NA, stage:1, alive, 630 days
153.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
142.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
137.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
115.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
103.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
95.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
77.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
76.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
76.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
75.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
72.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
72.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
72.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
70.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
69.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
69.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
62.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
61.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
61.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
60.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
59.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
58.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
56.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
56.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
55.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
54.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
54.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
53.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
53.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
53.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
52.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
51.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
51.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
50.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
50.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
49.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
49.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
49.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
49.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
49.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
47.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
47.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
47.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
47.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
47.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
47.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
46.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
46.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
46.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
45.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
44.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
44.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
43.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
43.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
42.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
42.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
42.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
42.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
42.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
41.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
40.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
40.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
40.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
40.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
39.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
39.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
39.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
39.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
39.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
38.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
38.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
38.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
38.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
38.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
37.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
37.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
37.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
36.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
36.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
36.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
35.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
35.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
35.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
34.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
34.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
34.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
34.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
34.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
34.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
34.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
34.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
33.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
33.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
33.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
33.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
33.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
33.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
33.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
33.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
32.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
32.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
32.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
32.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
32.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
32.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
32.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
31.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
31.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
31.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
31.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
31.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
31.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
31.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
30.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
30.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
30.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
30.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
30.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
30.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
30.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
30.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
30.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
30.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
29.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
29.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
29.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
29.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
29.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
29.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
29.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
29.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
29.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
29.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
28.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
28.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
28.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
28.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
28.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
28.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
27.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
27.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
27.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
27.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
27.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
27.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
27.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
27.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
27.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
26.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
26.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
26.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
26.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
26.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
26.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
25.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
25.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
25.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
25.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
25.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
25.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
24.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
24.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
24.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
24.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
24.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
24.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
24.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
24.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
24.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
23.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
23.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
22.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
22.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
22.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
22.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
22.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
22.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
22.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
21.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
21.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
21.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
21.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
21.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
20.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
20.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
20.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
20.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
20.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
20.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
20.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
19.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
19.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
19.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
19.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
19.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
19.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
19.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
19.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
19.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
18.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
18.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
17.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
17.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
17.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
17.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
16.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
16.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
16.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
15.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
14.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
14.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
14.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
14.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
13.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
12.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
12.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
12.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
12.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
11.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
425
Tumor
1.0
351
Tumor
0.9
411
Tumor
0.9
463
Tumor
0.9
743
Tumor
0.8
635
Tumor
0.8
497
Tumor
0.8
271
Tumor
0.8
211
Tumor
0.7
331
Tumor
0.7
123
Tumor
0.7
661
Tumor
0.7
671
Tumor
0.6
567
Tumor
0.6
277
Tumor
0.6
977
Tumor
0.6
1021
Tumor
0.6
724
Normal
0.6
865
Tumor
0.5
525
Tumor
0.5
297
Tumor
0.5
221
Tumor
0.5
443
Tumor
0.5
367
Tumor
0.5
131
Tumor
0.5
383
Tumor
0.5
357
Tumor
0.5
533
Tumor
0.5
455
Tumor
0.4
571
Tumor
0.4
217
Tumor
0.4
737
Tumor
0.4
665
Tumor
0.4
387
Tumor
0.4
573
Tumor
0.4
112
Tumor
0.4
1031
Tumor
0.3
663
Tumor
0.3
967
Tumor
0.3
983
Tumor
0.3
385
Tumor
0.3
975
Tumor
0.3
814
Normal
0.3
227
Tumor
0.3
285
Tumor
0.3
813
Tumor
0.3
815
Tumor
0.3
921
Tumor
0.3
413
Tumor
0.3
427
Tumor
0.3
685
Tumor
0.3
213
Tumor
0.3
311
Tumor
0.3
161
Tumor
0.3
391
Tumor
0.3
147
Tumor
0.2
923
Tumor
0.2
313
Tumor
0.2
877
Tumor
0.2
395
Tumor
0.2
451
Tumor
0.2
563
Tumor
0.2
393
Tumor
0.2
881
Tumor
0.2
125
Tumor
0.2
343
Tumor
0.2
545
Tumor
0.2
431
Tumor
0.2
647
Tumor
0.2
883
Tumor
0.2
527
Tumor
0.2
817
Tumor
0.2
363
Tumor
0.2
447
Tumor
0.2
467
Tumor
0.2
375
Tumor
0.2
493
Tumor
0.1
641
Tumor
0.1
445
Tumor
0.1
965
Tumor
0.1
695
Tumor
0.1
917
Tumor
0.1
231
Tumor
0.1
171
Tumor
0.1
487
Tumor
0.1
951
Tumor
0.1
423
Tumor
0.1
433
Tumor
0.1
464
Normal
0.1
368
Normal
0.1
135
Tumor
0.1
483
Tumor
0.1
452
Normal
0.0
1027
Tumor
0.0
715
Tumor
0.0
515
Tumor
0.0
361
Tumor
0.0
523
Tumor
0.0
185
Tumor
0.0
1013
Tumor
0.0
341
Tumor
0.0
517
Tumor
0.0
195
Tumor
0.0
435
Tumor
0.0
187
Tumor
0.0
1025
Tumor
0.0
913
Tumor
0.0
191
Tumor
0.0
267
Tumor
0.0
727
Tumor
0.0
777
Tumor
0.0
943
Tumor
0.0
421
Tumor
0.0
537
Tumor
0.0
697
Tumor
0.0
384
Normal
0.0
353
Tumor
0.0
823
Tumor
0.0
283
Tumor
0.0
465
Tumor
0.0
535
Tumor
0.0
127
Tumor
-0.1
422
Normal
-0.1
461
Tumor
-0.1
873
Tumor
-0.1
257
Tumor
-0.1
863
Tumor
-0.1
867
Tumor
-0.1
491
Tumor
-0.1
426
Normal
-0.1
186
Normal
-0.1
223
Tumor
-0.1
355
Tumor
-0.1
444
Normal
-0.1
471
Tumor
-0.1
124
Normal
-0.1
456
Normal
-0.1
172
Normal
-0.1
526
Normal
-0.1
113
Tumor
-0.1
534
Normal
-0.1
1041
Tumor
-0.1
666
Normal
-0.1
358
Normal
-0.1
145
Tumor
-0.1
365
Tumor
-0.1
222
Normal
-0.1
388
Normal
-0.1
468
Normal
-0.1
162
Normal
-0.1
396
Normal
-0.1
851
Tumor
-0.1
553
Tumor
-0.1
568
Normal
-0.1
721
Tumor
-0.1
354
Normal
-0.1
672
Normal
-0.1
741
Tumor
-0.1
148
Normal
-0.1
785
Tumor
-0.1
428
Normal
-0.2
394
Normal
-0.2
192
Normal
-0.2
557
Tumor
-0.2
528
Normal
-0.2
914
Normal
-0.2
617
Tumor
-0.2
352
Normal
-0.2
466
Normal
-0.2
344
Normal
-0.2
698
Normal
-0.2
786
Normal
-0.2
366
Normal
-0.2
744
Normal
-0.2
1045
Tumor
-0.2
224
Normal
-0.2
911
Tumor
-0.2
473
Tumor
-0.2
564
Normal
-0.2
432
Normal
-0.2
414
Normal
-0.2
137
Tumor
-0.2
554
Normal
-0.2
546
Normal
-0.2
1015
Tumor
-0.2
745
Tumor
-0.2
342
Normal
-0.2
111
Normal
-0.2
376
Normal
-0.2
268
Normal
-0.2
196
Normal
-0.2
558
Normal
-0.2
1014
Normal
-0.2
984
Normal
-0.2
957
Tumor
-0.2
386
Normal
-0.2
857
Tumor
-0.2
114
Normal
-0.2
912
Normal
-0.2
664
Normal
-0.2
615
Tumor
-0.2
286
Normal
-0.2
126
Normal
-0.2
572
Normal
-0.2
327
Tumor
-0.2
446
Normal
-0.2
861
Tumor
-0.2
141
Tumor
-0.2
188
Normal
-0.2
574
Normal
-0.2
228
Normal
-0.2
648
Normal
-0.2
662
Normal
-0.2
424
Normal
-0.2
477
Tumor
-0.2
492
Normal
-0.2
392
Normal
-0.2
214
Normal
-0.2
218
Normal
-0.2
884
Normal
-0.3
978
Normal
-0.3
1043
Tumor
-0.3
488
Normal
-0.3
498
Normal
-0.3
481
Tumor
-0.3
882
Normal
-0.3
128
Normal
-0.3
755
Tumor
-0.3
963
Tumor
-0.3
284
Normal
-0.3
434
Normal
-0.3
1046
Normal
-0.3
261
Tumor
-0.3
146
Normal
-0.3
858
Normal
-0.3
627
Tumor
-0.3
713
Tumor
-0.3
686
Normal
-0.3
462
Normal
-0.3
616
Normal
-0.3
138
Normal
-0.3
258
Normal
-0.3
494
Normal
-0.3
298
Normal
-0.3
1016
Normal
-0.3
332
Normal
-0.3
272
Normal
-0.3
864
Normal
-0.3
636
Normal
-0.3
314
Normal
-0.3
362
Normal
-0.3
132
Normal
-0.3
513
Tumor
-0.3
778
Normal
-0.3
953
Tumor
-0.3
436
Normal
-0.3
538
Normal
-0.3
212
Normal
-0.3
868
Normal
-0.3
738
Normal
-0.3
878
Normal
-0.3
484
Normal
-0.3
142
Normal
-0.3
696
Normal
-0.4
356
Normal
-0.4
618
Normal
-0.4
364
Normal
-0.4
514
Normal
-0.4
922
Normal
-0.4
415
Tumor
-0.4
818
Normal
-0.4
232
Normal
-0.4
328
Normal
-0.4
412
Normal
-0.4
136
Normal
-0.4
1028
Normal
-0.4
915
Tumor
-0.4
448
Normal
-0.4
628
Normal
-0.4
866
Normal
-0.4
278
Normal
-0.4
482
Normal
-0.4
746
Normal
-0.4
966
Normal
-0.4
742
Normal
-0.4
824
Normal
-0.4
262
Normal
-0.4
723
Tumor
-0.4
924
Normal
-0.4
1044
Normal
-0.4
756
Normal
-0.4
416
Normal
-0.4
852
Normal
-0.4
968
Normal
-0.4
874
Normal
-0.4
524
Normal
-0.4
516
Normal
-0.4
982
Normal
-0.4
642
Normal
-0.4
312
Normal
-0.5
816
Normal
-0.5
536
Normal
-0.5
958
Normal
-0.5
716
Normal
-0.5
1032
Normal
-0.5
964
Normal
-0.5
1042
Normal
-0.5
722
Normal
-0.5
976
Normal
-0.5
925
Tumor
-0.5
981
Tumor
-0.5
916
Normal
-0.5
862
Normal
-0.5
938
Normal
-0.5
518
Normal
-0.5
926
Normal
-0.5
478
Normal
-0.5
728
Normal
-0.5
474
Normal
-0.5
918
Normal
-0.5
954
Normal
-0.6
714
Normal
-0.6
944
Normal
-0.6
952
Normal
-0.6
1026
Normal
-0.6
937
Tumor
-0.7
955
Tumor
-0.7
956
Normal
-0.7
472
Normal
-0.8
1022
Normal
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
