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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ISG20L2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
61.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
35.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
34.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
34.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
33.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
32.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
32.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
30.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
29.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
29.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
29.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
28.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
26.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
26.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
25.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
25.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
25.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
24.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
23.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
23.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
23.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
22.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
22.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
22.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
22.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
22.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
22.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
21.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
21.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
20.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
20.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
20.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
20.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
20.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
20.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
19.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
19.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
19.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
19.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
19.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
19.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
18.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
18.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
18.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
17.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
17.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
17.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
17.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
17.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
17.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
17.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
17.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
17.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
17.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
17.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
16.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
16.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
16.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
16.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
16.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
16.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
16.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
16.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
15.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
15.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
15.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
15.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
15.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
15.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
15.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
15.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
15.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
15.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
14.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
14.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
14.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
14.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
14.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
14.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
14.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
14.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
14.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
14.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
13.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
13.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
13.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
13.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
13.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
13.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
13.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
13.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
13.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
13.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
13.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
12.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
12.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
12.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
12.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
12.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
12.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
12.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
12.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
12.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
12.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
12.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
12.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
12.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
11.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
11.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
11.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
11.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
11.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
11.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
11.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
11.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
11.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
11.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
11.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
11.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
11.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
11.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
11.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
10.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
10.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
10.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
10.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
10.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
10.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
9.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
9.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
9.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
9.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
9.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
9.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
9.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
9.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
9.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
8.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
8.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
8.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
8.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
8.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
8.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
8.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
7.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
6.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ISG20L2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.8
Number of samples
231
Samples
Sample
Description
TPM
DO23521
0 years, male, NA, stage:3, alive, 1110 days
84.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
40.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
38.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
30.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
29.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
28.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
26.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
24.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
24.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
24.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
24.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
23.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
23.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
22.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
22.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
22.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
21.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
21.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
21.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
20.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
20.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
20.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
20.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
20.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
19.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
19.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
19.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
19.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
19.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
19.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
19.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
19.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
18.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
18.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
18.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
18.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
18.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
18.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
18.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
18.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
18.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
17.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
17.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
17.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
17.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
17.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
17.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
17.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
17.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
16.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
16.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
16.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
16.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
16.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
16.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
16.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
16.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
16.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
15.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
15.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
15.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
15.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
15.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
15.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
15.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
15.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
15.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
15.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
15.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
15.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
14.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
14.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
14.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
14.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
14.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
14.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
14.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
14.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
13.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
13.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
13.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
13.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
13.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
13.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
13.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
13.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
13.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
13.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
13.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
12.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
12.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
12.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
12.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
12.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
12.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
12.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
12.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
12.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
11.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
11.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
11.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
10.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
10.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
10.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
7.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
7.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
6.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
4.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
2.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
2.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
1.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
427
Tumor
1.6
965
Tumor
1.3
473
Tumor
1.3
123
Tumor
1.2
357
Tumor
1.2
743
Tumor
1.2
431
Tumor
1.1
567
Tumor
1.1
131
Tumor
1.1
497
Tumor
1.0
957
Tumor
1.0
977
Tumor
1.0
545
Tumor
1.0
351
Tumor
1.0
877
Tumor
1.0
951
Tumor
0.9
211
Tumor
0.9
967
Tumor
0.9
1013
Tumor
0.8
865
Tumor
0.8
635
Tumor
0.7
1025
Tumor
0.7
447
Tumor
0.7
1021
Tumor
0.7
331
Tumor
0.7
817
Tumor
0.7
975
Tumor
0.7
425
Tumor
0.6
861
Tumor
0.6
267
Tumor
0.6
355
Tumor
0.6
573
Tumor
0.6
685
Tumor
0.6
1031
Tumor
0.6
647
Tumor
0.6
537
Tumor
0.6
557
Tumor
0.5
663
Tumor
0.5
523
Tumor
0.5
517
Tumor
0.5
487
Tumor
0.5
393
Tumor
0.5
445
Tumor
0.5
161
Tumor
0.5
641
Tumor
0.5
493
Tumor
0.5
737
Tumor
0.5
227
Tumor
0.5
953
Tumor
0.4
1027
Tumor
0.4
863
Tumor
0.4
813
Tumor
0.4
525
Tumor
0.4
867
Tumor
0.4
983
Tumor
0.4
435
Tumor
0.4
477
Tumor
0.4
727
Tumor
0.4
943
Tumor
0.4
873
Tumor
0.4
271
Tumor
0.4
527
Tumor
0.4
257
Tumor
0.4
777
Tumor
0.4
471
Tumor
0.3
387
Tumor
0.3
411
Tumor
0.3
923
Tumor
0.3
911
Tumor
0.3
671
Tumor
0.3
285
Tumor
0.3
533
Tumor
0.3
1041
Tumor
0.3
283
Tumor
0.3
715
Tumor
0.3
341
Tumor
0.3
491
Tumor
0.3
171
Tumor
0.3
823
Tumor
0.3
881
Tumor
0.3
383
Tumor
0.3
135
Tumor
0.3
483
Tumor
0.3
221
Tumor
0.3
883
Tumor
0.2
814
Normal
0.2
367
Tumor
0.2
375
Tumor
0.2
297
Tumor
0.2
535
Tumor
0.2
695
Tumor
0.2
231
Tumor
0.2
396
Normal
0.2
112
Tumor
0.2
313
Tumor
0.2
433
Tumor
0.2
553
Tumor
0.2
571
Tumor
0.2
857
Tumor
0.2
661
Tumor
0.1
858
Normal
0.1
741
Tumor
0.1
443
Tumor
0.1
361
Tumor
0.1
343
Tumor
0.1
388
Normal
0.1
515
Tumor
0.1
385
Tumor
0.1
327
Tumor
0.1
277
Tumor
0.1
125
Tumor
0.1
615
Tumor
0.1
913
Tumor
0.1
415
Tumor
0.1
785
Tumor
0.1
213
Tumor
0.1
463
Tumor
0.1
697
Tumor
0.1
147
Tumor
0.1
113
Tumor
0.1
818
Normal
0.1
824
Normal
0.1
912
Normal
0.1
721
Tumor
0.0
395
Tumor
0.0
461
Tumor
0.0
665
Tumor
0.0
724
Normal
0.0
666
Normal
0.0
261
Tumor
0.0
963
Tumor
0.0
617
Tumor
0.0
1045
Tumor
0.0
127
Tumor
0.0
114
Normal
0.0
386
Normal
0.0
451
Tumor
0.0
648
Normal
0.0
1042
Normal
0.0
664
Normal
0.0
141
Tumor
0.0
944
Normal
0.0
421
Tumor
0.0
423
Tumor
0.0
816
Normal
0.0
124
Normal
0.0
1015
Tumor
0.0
455
Tumor
0.0
187
Tumor
0.0
332
Normal
0.0
394
Normal
0.0
481
Tumor
-0.1
366
Normal
-0.1
925
Tumor
-0.1
662
Normal
-0.1
465
Tumor
-0.1
513
Tumor
-0.1
884
Normal
-0.1
744
Normal
-0.1
921
Tumor
-0.1
391
Tumor
-0.1
616
Normal
-0.1
852
Normal
-0.1
534
Normal
-0.1
413
Tumor
-0.1
298
Normal
-0.1
713
Tumor
-0.1
1032
Normal
-0.1
563
Tumor
-0.1
954
Normal
-0.1
958
Normal
-0.1
1022
Normal
-0.1
484
Normal
-0.1
353
Tumor
-0.1
314
Normal
-0.1
698
Normal
-0.1
1043
Tumor
-0.1
456
Normal
-0.1
191
Tumor
-0.1
952
Normal
-0.1
1014
Normal
-0.1
538
Normal
-0.1
968
Normal
-0.1
488
Normal
-0.1
554
Normal
-0.2
956
Normal
-0.2
628
Normal
-0.2
878
Normal
-0.2
363
Tumor
-0.2
185
Tumor
-0.2
1026
Normal
-0.2
232
Normal
-0.2
1046
Normal
-0.2
365
Tumor
-0.2
111
Normal
-0.2
498
Normal
-0.2
1028
Normal
-0.2
981
Tumor
-0.2
627
Tumor
-0.2
422
Normal
-0.2
528
Normal
-0.2
938
Normal
-0.2
815
Tumor
-0.2
642
Normal
-0.2
851
Tumor
-0.2
384
Normal
-0.2
924
Normal
-0.2
716
Normal
-0.2
362
Normal
-0.2
728
Normal
-0.2
937
Tumor
-0.2
572
Normal
-0.2
984
Normal
-0.2
568
Normal
-0.2
311
Tumor
-0.2
312
Normal
-0.2
966
Normal
-0.2
636
Normal
-0.2
546
Normal
-0.2
192
Normal
-0.2
516
Normal
-0.2
723
Tumor
-0.3
262
Normal
-0.3
494
Normal
-0.3
416
Normal
-0.3
258
Normal
-0.3
564
Normal
-0.3
862
Normal
-0.3
714
Normal
-0.3
145
Tumor
-0.3
272
Normal
-0.3
368
Normal
-0.3
392
Normal
-0.3
223
Tumor
-0.3
137
Tumor
-0.3
742
Normal
-0.3
574
Normal
-0.3
212
Normal
-0.3
518
Normal
-0.3
722
Normal
-0.3
864
Normal
-0.3
428
Normal
-0.3
536
Normal
-0.3
492
Normal
-0.3
412
Normal
-0.3
618
Normal
-0.3
672
Normal
-0.3
955
Tumor
-0.3
558
Normal
-0.3
976
Normal
-0.3
982
Normal
-0.3
268
Normal
-0.3
467
Tumor
-0.3
286
Normal
-0.3
278
Normal
-0.3
364
Normal
-0.3
195
Tumor
-0.3
328
Normal
-0.3
978
Normal
-0.3
376
Normal
-0.3
915
Tumor
-0.3
524
Normal
-0.3
138
Normal
-0.3
964
Normal
-0.4
462
Normal
-0.4
464
Normal
-0.4
224
Normal
-0.4
414
Normal
-0.4
146
Normal
-0.4
222
Normal
-0.4
882
Normal
-0.4
136
Normal
-0.4
874
Normal
-0.4
426
Normal
-0.4
214
Normal
-0.4
466
Normal
-0.4
866
Normal
-0.4
142
Normal
-0.4
128
Normal
-0.4
217
Tumor
-0.4
696
Normal
-0.4
686
Normal
-0.4
436
Normal
-0.4
468
Normal
-0.4
218
Normal
-0.4
284
Normal
-0.4
448
Normal
-0.4
132
Normal
-0.4
356
Normal
-0.4
172
Normal
-0.4
452
Normal
-0.4
526
Normal
-0.4
514
Normal
-0.4
162
Normal
-0.4
148
Normal
-0.4
228
Normal
-0.4
472
Normal
-0.4
188
Normal
-0.4
868
Normal
-0.4
474
Normal
-0.5
196
Normal
-0.5
424
Normal
-0.5
342
Normal
-0.5
922
Normal
-0.5
738
Normal
-0.5
186
Normal
-0.5
344
Normal
-0.5
126
Normal
-0.5
478
Normal
-0.5
1044
Normal
-0.5
914
Normal
-0.5
1016
Normal
-0.5
352
Normal
-0.5
746
Normal
-0.5
917
Tumor
-0.5
446
Normal
-0.5
745
Tumor
-0.5
926
Normal
-0.5
434
Normal
-0.5
755
Tumor
-0.6
354
Normal
-0.6
918
Normal
-0.6
444
Normal
-0.6
358
Normal
-0.6
482
Normal
-0.6
778
Normal
-0.7
916
Normal
-0.7
432
Normal
-0.8
786
Normal
-0.8
756
Normal
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
