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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMCO1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
136.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
756.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
426.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
409.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
318.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
316.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
312.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
312.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
293.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
293.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
292.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
292.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
292.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
280.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
273.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
271.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
264.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
261.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
246.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
242.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
241.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
241.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
240.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
239.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
238.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
237.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
236.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
230.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
228.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
227.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
226.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
226.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
225.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
224.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
221.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
220.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
219.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
217.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
214.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
213.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
212.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
211.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
210.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
209.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
209.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
208.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
207.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
204.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
202.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
202.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
201.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
200.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
200.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
200.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
199.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
198.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
198.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
198.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
197.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
196.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
196.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
193.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
193.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
193.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
193.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
193.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
192.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
192.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
192.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
190.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
190.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
188.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
188.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
188.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
188.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
187.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
186.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
185.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
182.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
181.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
181.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
180.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
178.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
178.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
177.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
176.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
176.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
175.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
174.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
174.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
173.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
173.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
172.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
171.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
171.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
170.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
169.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
168.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
167.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
167.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
166.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
165.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
165.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
164.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
164.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
164.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
163.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
163.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
162.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
162.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
161.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
161.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
160.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
160.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
159.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
159.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
159.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
156.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
156.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
156.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
155.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
155.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
154.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
154.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
153.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
153.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
153.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
152.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
151.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
151.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
151.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
150.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
150.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
150.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
149.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
149.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
148.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
148.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
148.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
147.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
147.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
147.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
146.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
145.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
145.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
144.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
144.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
144.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
143.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
143.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
142.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
142.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
142.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
141.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
141.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
141.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
139.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
139.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
137.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
136.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
136.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
136.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
135.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
135.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
135.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
135.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
135.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
134.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
132.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
132.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
132.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
131.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
131.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
131.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
130.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
127.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
127.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
126.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
126.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
126.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
125.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
124.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
124.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
123.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
123.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
123.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
123.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
122.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
122.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
122.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
121.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
121.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
121.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
120.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
120.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
120.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
120.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
119.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
118.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
118.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
118.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
118.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
118.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
118.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
118.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
116.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
116.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
115.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
115.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
115.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
114.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
114.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
113.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
113.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
112.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
112.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
112.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
111.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
110.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
110.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
110.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
110.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
109.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
109.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
108.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
108.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
108.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
108.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
107.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
107.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
107.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
106.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
106.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
105.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
104.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
104.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
104.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
104.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
103.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
103.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
102.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
101.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
101.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
101.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
101.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
100.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
100.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
100.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
99.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
99.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
99.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
99.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
98.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
98.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
97.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
97.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
97.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
96.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
95.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
95.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
95.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
94.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
94.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
92.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
92.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
91.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
91.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
90.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
90.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
90.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
89.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
89.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
88.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
88.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
86.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
86.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
86.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
85.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
85.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
83.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
83.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
82.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
81.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
81.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
80.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
78.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
77.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
77.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
76.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
76.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
76.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
76.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
76.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
75.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
75.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
75.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
74.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
74.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
73.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
72.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
72.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
71.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
71.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
70.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
70.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
70.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
70.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
69.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
69.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
69.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
69.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
68.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
68.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
68.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
67.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
67.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
67.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
66.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
66.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
66.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
66.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
66.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
65.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
64.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
63.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
62.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
60.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
59.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
59.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
59.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
59.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
56.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
55.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
55.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
55.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
54.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
53.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
53.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
52.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
51.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
51.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
50.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
50.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
48.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
47.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
47.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
46.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
46.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
44.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
44.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
44.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
44.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
43.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
42.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
39.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
38.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
37.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
35.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
34.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
24.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
24.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
16.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMCO1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
37.3
Number of samples
231
Samples
Sample
Description
TPM
DO48704
0 years, female, NA, stage:3, alive, 750 days
103.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
103.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
76.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
72.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
72.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
68.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
68.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
68.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
67.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
65.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
65.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
64.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
64.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
63.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
63.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
61.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
60.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
60.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
59.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
59.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
59.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
58.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
57.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
56.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
55.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
55.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
55.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
55.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
54.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
54.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
54.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
54.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
54.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
54.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
53.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
51.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
51.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
51.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
51.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
50.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
50.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
50.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
50.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
50.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
49.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
49.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
48.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
47.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
47.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
47.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
46.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
46.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
45.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
45.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
45.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
45.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
45.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
45.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
45.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
45.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
45.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
44.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
44.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
43.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
43.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
43.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
43.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
43.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
42.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
42.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
42.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
42.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
42.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
42.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
41.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
41.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
41.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
41.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
40.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
40.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
40.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
40.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
39.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
39.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
39.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
39.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
39.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
38.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
38.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
38.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
38.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
38.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
38.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
38.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
37.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
37.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
37.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
37.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
37.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
37.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
37.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
36.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
36.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
36.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
36.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
36.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
36.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
36.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
36.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
36.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
36.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
36.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
35.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
35.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
35.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
35.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
35.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
34.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
34.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
34.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
34.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
33.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
33.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
33.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
33.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
33.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
33.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
33.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
33.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
33.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
33.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
33.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
33.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
32.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
32.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
32.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
32.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
32.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
32.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
32.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
32.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
32.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
32.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
31.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
31.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
31.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
31.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
30.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
30.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
30.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
30.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
30.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
30.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
30.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
30.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
30.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
29.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
29.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
29.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
29.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
29.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
28.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
28.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
28.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
28.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
28.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
28.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
28.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
28.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
27.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
27.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
27.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
27.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
27.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
27.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
27.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
27.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
26.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
26.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
26.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
25.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
25.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
25.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
25.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
24.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
24.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
23.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
23.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
23.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
23.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
23.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
22.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
22.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
22.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
22.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
22.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
22.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
22.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
21.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
21.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
21.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
21.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
20.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
20.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
20.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
20.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
19.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
19.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
19.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
19.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
18.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
18.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
18.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
18.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
17.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
17.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
17.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
16.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
16.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
16.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
16.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
16.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
15.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
15.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
15.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
14.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
14.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
14.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
12.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1013
Tumor
1.9
745
Tumor
1.3
571
Tumor
1.2
411
Tumor
1.1
567
Tumor
1.0
533
Tumor
1.0
615
Tumor
0.9
123
Tumor
0.9
257
Tumor
0.8
227
Tumor
0.8
477
Tumor
0.8
925
Tumor
0.8
435
Tumor
0.7
361
Tumor
0.7
724
Normal
0.7
267
Tumor
0.7
231
Tumor
0.7
313
Tumor
0.7
697
Tumor
0.6
537
Tumor
0.6
357
Tumor
0.6
911
Tumor
0.6
967
Tumor
0.6
636
Normal
0.6
1027
Tumor
0.6
923
Tumor
0.6
713
Tumor
0.5
1025
Tumor
0.5
525
Tumor
0.5
957
Tumor
0.5
513
Tumor
0.5
557
Tumor
0.5
527
Tumor
0.5
663
Tumor
0.5
685
Tumor
0.5
627
Tumor
0.5
395
Tumor
0.5
915
Tumor
0.4
135
Tumor
0.4
145
Tumor
0.4
1014
Normal
0.4
491
Tumor
0.4
375
Tumor
0.4
628
Normal
0.4
865
Tumor
0.4
191
Tumor
0.4
367
Tumor
0.4
573
Tumor
0.4
387
Tumor
0.3
857
Tumor
0.3
351
Tumor
0.3
922
Normal
0.3
642
Normal
0.3
953
Tumor
0.3
861
Tumor
0.3
535
Tumor
0.3
423
Tumor
0.3
1043
Tumor
0.3
984
Normal
0.3
353
Tumor
0.3
558
Normal
0.3
648
Normal
0.3
341
Tumor
0.3
873
Tumor
0.3
195
Tumor
0.3
392
Normal
0.2
913
Tumor
0.2
616
Normal
0.2
982
Normal
0.2
481
Tumor
0.2
388
Normal
0.2
431
Tumor
0.2
866
Normal
0.2
563
Tumor
0.2
327
Tumor
0.2
223
Tumor
0.2
686
Normal
0.2
232
Normal
0.2
951
Tumor
0.2
465
Tumor
0.2
635
Tumor
0.2
358
Normal
0.2
363
Tumor
0.2
963
Tumor
0.2
128
Normal
0.2
1032
Normal
0.2
212
Normal
0.2
883
Tumor
0.2
258
Normal
0.2
981
Tumor
0.2
394
Normal
0.2
695
Tumor
0.2
553
Tumor
0.2
421
Tumor
0.2
196
Normal
0.2
171
Tumor
0.2
564
Normal
0.2
978
Normal
0.2
618
Normal
0.2
755
Tumor
0.2
728
Normal
0.2
448
Normal
0.2
443
Tumor
0.2
851
Tumor
0.1
483
Tumor
0.1
314
Normal
0.1
396
Normal
0.1
368
Normal
0.1
222
Normal
0.1
514
Normal
0.1
432
Normal
0.1
944
Normal
0.1
1046
Normal
0.1
862
Normal
0.1
568
Normal
0.1
228
Normal
0.1
983
Tumor
0.1
1016
Normal
0.1
662
Normal
0.1
1015
Tumor
0.1
365
Tumor
0.1
864
Normal
0.1
466
Normal
0.1
523
Tumor
0.1
1028
Normal
0.1
172
Normal
0.1
366
Normal
0.1
868
Normal
0.1
647
Tumor
0.1
977
Tumor
0.1
534
Normal
0.1
665
Tumor
0.1
916
Normal
0.1
742
Normal
0.1
1044
Normal
0.1
376
Normal
0.1
278
Normal
0.1
918
Normal
0.1
462
Normal
0.1
125
Tumor
0.1
474
Normal
0.1
1022
Normal
0.1
878
Normal
0.0
426
Normal
0.0
737
Tumor
0.0
284
Normal
0.0
217
Tumor
0.0
664
Normal
0.0
1021
Tumor
0.0
362
Normal
0.0
424
Normal
0.0
968
Normal
0.0
666
Normal
0.0
1041
Tumor
0.0
488
Normal
0.0
964
Normal
0.0
127
Tumor
0.0
741
Tumor
0.0
221
Tumor
0.0
518
Normal
0.0
546
Normal
0.0
137
Tumor
0.0
451
Tumor
0.0
882
Normal
0.0
914
Normal
0.0
714
Normal
0.0
671
Tumor
0.0
354
Normal
0.0
148
Normal
0.0
696
Normal
0.0
1045
Tumor
0.0
912
Normal
0.0
428
Normal
0.0
342
Normal
0.0
414
Normal
0.0
328
Normal
0.0
433
Tumor
0.0
1042
Normal
0.0
515
Tumor
0.0
816
Normal
0.0
468
Normal
0.0
422
Normal
0.0
536
Normal
0.0
111
Normal
0.0
517
Tumor
0.0
213
Tumor
0.0
331
Tumor
0.0
817
Tumor
0.0
262
Normal
0.0
874
Normal
0.0
286
Normal
0.0
722
Normal
0.0
877
Tumor
0.0
356
Normal
0.0
298
Normal
0.0
526
Normal
0.0
824
Normal
0.0
452
Normal
0.0
391
Tumor
0.0
1026
Normal
0.0
412
Normal
0.0
297
Tumor
0.0
114
Normal
0.0
113
Tumor
0.0
446
Normal
-0.1
738
Normal
-0.1
261
Tumor
-0.1
344
Normal
-0.1
572
Normal
-0.1
494
Normal
-0.1
161
Tumor
-0.1
493
Tumor
-0.1
924
Normal
-0.1
528
Normal
-0.1
352
Normal
-0.1
224
Normal
-0.1
214
Normal
-0.1
976
Normal
-0.1
436
Normal
-0.1
938
Normal
-0.1
554
Normal
-0.1
455
Tumor
-0.1
954
Normal
-0.1
332
Normal
-0.1
672
Normal
-0.1
112
Tumor
-0.1
937
Tumor
-0.1
926
Normal
-0.1
136
Normal
-0.1
958
Normal
-0.1
746
Normal
-0.1
955
Tumor
-0.1
386
Normal
-0.1
756
Normal
-0.1
312
Normal
-0.1
272
Normal
-0.1
473
Tumor
-0.1
268
Normal
-0.1
484
Normal
-0.1
786
Normal
-0.1
218
Normal
-0.1
721
Tumor
-0.1
482
Normal
-0.1
818
Normal
-0.1
142
Normal
-0.1
364
Normal
-0.1
444
Normal
-0.1
921
Tumor
-0.1
384
Normal
-0.1
524
Normal
-0.1
698
Normal
-0.1
823
Tumor
-0.1
124
Normal
-0.1
852
Normal
-0.2
723
Tumor
-0.2
461
Tumor
-0.2
777
Tumor
-0.2
355
Tumor
-0.2
956
Normal
-0.2
383
Tumor
-0.2
427
Tumor
-0.2
472
Normal
-0.2
574
Normal
-0.2
132
Normal
-0.2
538
Normal
-0.2
884
Normal
-0.2
187
Tumor
-0.2
716
Normal
-0.2
277
Tumor
-0.2
516
Normal
-0.2
492
Normal
-0.2
147
Tumor
-0.2
617
Tumor
-0.2
445
Tumor
-0.2
126
Normal
-0.2
415
Tumor
-0.2
162
Normal
-0.2
785
Tumor
-0.2
952
Normal
-0.2
138
Normal
-0.2
497
Tumor
-0.2
416
Normal
-0.2
188
Normal
-0.2
464
Normal
-0.2
456
Normal
-0.3
471
Tumor
-0.3
858
Normal
-0.3
778
Normal
-0.3
447
Tumor
-0.3
343
Tumor
-0.3
867
Tumor
-0.3
813
Tumor
-0.3
1031
Tumor
-0.3
434
Normal
-0.3
727
Tumor
-0.3
744
Normal
-0.3
715
Tumor
-0.3
393
Tumor
-0.3
478
Normal
-0.3
881
Tumor
-0.3
966
Normal
-0.3
467
Tumor
-0.3
815
Tumor
-0.3
283
Tumor
-0.4
661
Tumor
-0.4
413
Tumor
-0.4
641
Tumor
-0.4
965
Tumor
-0.4
185
Tumor
-0.4
425
Tumor
-0.4
285
Tumor
-0.4
211
Tumor
-0.4
141
Tumor
-0.4
975
Tumor
-0.4
311
Tumor
-0.4
943
Tumor
-0.4
814
Normal
-0.4
498
Normal
-0.4
186
Normal
-0.5
192
Normal
-0.5
385
Tumor
-0.5
545
Tumor
-0.5
271
Tumor
-0.5
463
Tumor
-0.5
743
Tumor
-0.6
917
Tumor
-0.6
131
Tumor
-0.6
146
Normal
-0.6
487
Tumor
-0.7
863
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.