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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
POGK is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
53.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
52.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
41.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
38.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
37.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
33.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
33.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
32.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
31.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
31.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
29.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
28.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
28.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
27.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
26.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
25.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
23.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
22.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
21.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
20.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
20.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
20.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
20.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
19.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
19.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
19.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
18.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
18.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
18.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
17.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
17.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
17.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
16.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
16.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
16.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
16.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
15.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
15.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
15.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
14.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
14.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
14.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
14.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
14.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
13.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
13.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
13.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
13.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
13.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
12.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
12.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
12.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
12.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
12.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
12.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
12.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
11.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
11.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
10.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
10.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
10.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
10.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
10.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
10.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
10.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
9.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
9.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
8.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
8.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
8.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
8.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
8.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
8.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
7.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
7.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
7.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
7.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
7.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
6.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
5.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
5.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
5.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
4.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
4.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
4.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
3.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
POGK is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.9
Number of samples
231
Samples
Sample
Description
TPM
DO45251
0 years, female, NA, stage:2, alive, 900 days
76.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
62.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
61.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
59.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
47.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
47.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
44.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
42.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
35.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
32.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
30.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
30.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
30.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
29.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
29.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
28.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
28.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
27.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
27.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
27.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
26.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
26.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
26.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
25.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
24.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
24.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
24.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
24.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
24.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
24.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
24.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
24.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
24.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
23.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
23.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
23.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
23.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
22.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
22.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
22.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
22.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
22.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
21.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
21.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
21.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
21.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
21.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
21.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
21.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
20.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
20.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
20.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
20.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
19.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
19.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
19.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
19.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
19.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
18.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
18.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
18.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
18.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
18.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
18.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
18.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
17.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
17.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
17.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
17.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
17.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
17.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
17.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
17.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
16.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
16.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
16.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
16.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
16.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
16.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
16.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
16.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
16.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
16.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
15.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
15.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
15.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
15.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
15.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
15.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
15.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
15.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
15.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
15.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
15.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
14.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
14.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
13.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
13.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
13.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
13.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
13.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
13.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
13.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
12.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
12.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
12.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
12.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
12.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
12.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
11.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
11.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
11.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
11.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
11.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
11.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
11.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
11.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
10.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
10.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
10.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
10.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
10.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
10.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
10.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
9.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
9.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
8.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
1.8
131
Tumor
1.6
427
Tumor
1.4
211
Tumor
1.4
425
Tumor
1.3
983
Tumor
1.2
957
Tumor
1.2
545
Tumor
1.1
737
Tumor
1.0
817
Tumor
0.9
331
Tumor
0.9
1013
Tumor
0.8
375
Tumor
0.8
447
Tumor
0.8
384
Normal
0.8
533
Tumor
0.7
191
Tumor
0.7
517
Tumor
0.7
445
Tumor
0.7
917
Tumor
0.7
297
Tumor
0.7
813
Tumor
0.7
951
Tumor
0.7
463
Tumor
0.7
535
Tumor
0.7
953
Tumor
0.6
497
Tumor
0.6
473
Tumor
0.6
527
Tumor
0.6
975
Tumor
0.6
357
Tumor
0.6
881
Tumor
0.6
443
Tumor
0.5
523
Tumor
0.5
814
Normal
0.5
361
Tumor
0.5
385
Tumor
0.5
525
Tumor
0.5
435
Tumor
0.5
283
Tumor
0.5
366
Normal
0.5
213
Tumor
0.5
1021
Tumor
0.4
977
Tumor
0.4
943
Tumor
0.4
416
Normal
0.4
727
Tumor
0.4
815
Tumor
0.4
857
Tumor
0.4
362
Normal
0.4
383
Tumor
0.4
285
Tumor
0.4
368
Normal
0.4
376
Normal
0.4
877
Tumor
0.4
724
Normal
0.4
573
Tumor
0.3
661
Tumor
0.3
313
Tumor
0.3
343
Tumor
0.3
365
Tumor
0.3
411
Tumor
0.3
851
Tumor
0.3
393
Tumor
0.3
135
Tumor
0.3
351
Tumor
0.3
671
Tumor
0.3
433
Tumor
0.2
455
Tumor
0.2
865
Tumor
0.2
923
Tumor
0.2
777
Tumor
0.2
311
Tumor
0.2
715
Tumor
0.2
721
Tumor
0.2
431
Tumor
0.2
546
Normal
0.2
883
Tumor
0.2
697
Tumor
0.2
227
Tumor
0.2
818
Normal
0.2
663
Tumor
0.2
823
Tumor
0.2
224
Normal
0.2
491
Tumor
0.1
921
Tumor
0.1
356
Normal
0.1
534
Normal
0.1
852
Normal
0.1
1025
Tumor
0.1
467
Tumor
0.1
567
Tumor
0.1
963
Tumor
0.1
277
Tumor
0.1
1031
Tumor
0.1
515
Tumor
0.1
387
Tumor
0.1
471
Tumor
0.1
863
Tumor
0.1
537
Tumor
0.1
1041
Tumor
0.1
413
Tumor
0.1
477
Tumor
0.1
483
Tumor
0.1
363
Tumor
0.1
514
Normal
0.1
488
Normal
0.1
395
Tumor
0.1
394
Normal
0.1
536
Normal
0.1
221
Tumor
0.1
125
Tumor
0.1
421
Tumor
0.0
493
Tumor
0.0
424
Normal
0.0
428
Normal
0.0
785
Tumor
0.0
685
Tumor
0.0
965
Tumor
0.0
217
Tumor
0.0
113
Tumor
0.0
415
Tumor
0.0
858
Normal
0.0
423
Tumor
0.0
554
Normal
0.0
513
Tumor
0.0
884
Normal
0.0
1042
Normal
0.0
873
Tumor
0.0
328
Normal
0.0
284
Normal
0.0
414
Normal
0.0
538
Normal
0.0
286
Normal
0.0
756
Normal
0.0
1046
Normal
0.0
412
Normal
0.0
444
Normal
0.0
426
Normal
0.0
745
Tumor
0.0
695
Tumor
0.0
192
Normal
0.0
355
Tumor
0.0
967
Tumor
0.0
223
Tumor
0.0
713
Tumor
-0.1
364
Normal
-0.1
698
Normal
-0.1
352
Normal
-0.1
354
Normal
-0.1
528
Normal
-0.1
456
Normal
-0.1
112
Tumor
-0.1
557
Tumor
-0.1
1043
Tumor
-0.1
1032
Normal
-0.1
195
Tumor
-0.1
647
Tumor
-0.1
422
Normal
-0.1
123
Tumor
-0.1
916
Normal
-0.1
723
Tumor
-0.1
744
Normal
-0.1
526
Normal
-0.1
824
Normal
-0.1
572
Normal
-0.1
461
Tumor
-0.1
434
Normal
-0.1
926
Normal
-0.1
228
Normal
-0.1
882
Normal
-0.1
466
Normal
-0.1
925
Tumor
-0.1
446
Normal
-0.1
958
Normal
-0.1
964
Normal
-0.1
141
Tumor
-0.1
341
Tumor
-0.2
918
Normal
-0.2
563
Tumor
-0.2
432
Normal
-0.2
145
Tumor
-0.2
327
Tumor
-0.2
516
Normal
-0.2
452
Normal
-0.2
451
Tumor
-0.2
396
Normal
-0.2
914
Normal
-0.2
212
Normal
-0.2
388
Normal
-0.2
524
Normal
-0.2
367
Tumor
-0.2
392
Normal
-0.2
464
Normal
-0.2
468
Normal
-0.2
222
Normal
-0.2
1044
Normal
-0.2
617
Tumor
-0.2
984
Normal
-0.2
976
Normal
-0.2
665
Tumor
-0.2
1028
Normal
-0.2
716
Normal
-0.2
778
Normal
-0.2
564
Normal
-0.2
498
Normal
-0.2
465
Tumor
-0.2
728
Normal
-0.2
492
Normal
-0.2
924
Normal
-0.2
386
Normal
-0.2
786
Normal
-0.2
146
Normal
-0.2
314
Normal
-0.3
312
Normal
-0.3
878
Normal
-0.3
738
Normal
-0.3
1022
Normal
-0.3
332
Normal
-0.3
1027
Tumor
-0.3
978
Normal
-0.3
481
Tumor
-0.3
128
Normal
-0.3
358
Normal
-0.3
1014
Normal
-0.3
866
Normal
-0.3
571
Tumor
-0.3
136
Normal
-0.3
127
Tumor
-0.3
518
Normal
-0.3
954
Normal
-0.3
138
Normal
-0.3
494
Normal
-0.3
741
Tumor
-0.3
938
Normal
-0.3
391
Tumor
-0.3
641
Tumor
-0.3
1045
Tumor
-0.3
478
Normal
-0.3
874
Normal
-0.3
142
Normal
-0.3
218
Normal
-0.3
114
Normal
-0.3
696
Normal
-0.3
816
Normal
-0.3
615
Tumor
-0.3
915
Tumor
-0.3
868
Normal
-0.3
278
Normal
-0.3
448
Normal
-0.3
124
Normal
-0.3
968
Normal
-0.4
912
Normal
-0.4
616
Normal
-0.4
966
Normal
-0.4
132
Normal
-0.4
196
Normal
-0.4
864
Normal
-0.4
862
Normal
-0.4
922
Normal
-0.4
558
Normal
-0.4
937
Tumor
-0.4
911
Tumor
-0.4
344
Normal
-0.4
111
Normal
-0.4
436
Normal
-0.4
568
Normal
-0.4
482
Normal
-0.4
214
Normal
-0.4
672
Normal
-0.4
1026
Normal
-0.4
1016
Normal
-0.4
952
Normal
-0.4
867
Tumor
-0.4
662
Normal
-0.4
342
Normal
-0.4
714
Normal
-0.4
746
Normal
-0.4
755
Tumor
-0.4
913
Tumor
-0.4
484
Normal
-0.4
861
Tumor
-0.4
722
Normal
-0.4
686
Normal
-0.4
742
Normal
-0.4
298
Normal
-0.4
627
Tumor
-0.4
353
Tumor
-0.4
664
Normal
-0.4
635
Tumor
-0.4
126
Normal
-0.4
1015
Tumor
-0.4
472
Normal
-0.4
628
Normal
-0.5
944
Normal
-0.5
648
Normal
-0.5
618
Normal
-0.5
462
Normal
-0.5
955
Tumor
-0.5
666
Normal
-0.5
636
Normal
-0.5
574
Normal
-0.6
982
Normal
-0.6
956
Normal
-0.6
474
Normal
-0.6
553
Tumor
-0.6
981
Tumor
-0.6
137
Tumor
-0.6
642
Normal
-0.7
487
Tumor
-0.7
231
Tumor
N/A
232
Normal
N/A
257
Tumor
N/A
258
Normal
N/A
261
Tumor
N/A
262
Normal
N/A
267
Tumor
N/A
147
Tumor
N/A
268
Normal
N/A
148
Normal
N/A
271
Tumor
N/A
272
Normal
N/A
161
Tumor
N/A
162
Normal
N/A
171
Tumor
N/A
172
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
