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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TIPRL is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
99.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
62.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
48.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
42.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
41.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
40.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
39.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
39.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
37.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
37.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
35.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
35.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
34.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
34.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
34.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
33.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
33.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
33.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
32.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
32.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
31.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
31.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
31.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
31.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
30.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
30.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
30.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
30.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
30.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
29.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
28.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
28.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
27.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
27.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
27.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
27.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
27.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
27.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
27.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
26.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
26.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
26.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
26.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
26.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
26.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
25.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
25.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
25.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
25.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
25.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
24.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
24.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
24.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
23.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
23.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
23.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
23.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
23.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
23.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
23.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
23.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
23.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
22.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
22.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
22.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
22.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
22.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
22.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
22.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
22.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
21.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
21.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
21.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
21.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
21.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
21.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
20.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
20.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
20.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
20.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
20.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
20.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
20.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
19.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
19.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
19.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
19.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
19.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
19.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
19.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
19.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
19.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
19.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
19.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
19.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
19.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
19.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
19.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
19.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
19.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
19.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
19.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
19.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
19.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
19.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
18.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
18.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
18.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
18.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
18.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
18.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
18.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
18.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
18.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
18.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
18.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
18.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
18.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
18.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
17.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
17.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
17.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
17.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
17.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
17.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
17.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
17.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
17.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
17.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
17.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
17.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
17.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
17.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
17.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
17.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
17.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
17.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
17.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
17.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
17.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
17.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
17.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
17.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
17.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
17.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
17.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
17.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
17.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
16.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
16.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
16.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
16.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
16.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
16.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
16.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
16.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
16.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
16.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
16.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
16.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
16.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
16.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
16.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
15.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
15.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
15.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
15.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
15.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
15.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
15.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
15.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
15.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
15.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
15.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
15.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
15.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
15.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
15.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
15.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
15.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
15.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
14.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
14.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
14.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
14.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
14.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
14.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
14.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
14.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
14.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
14.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
14.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
14.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
14.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
14.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
14.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
14.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
14.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
14.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
14.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
13.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
13.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
13.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
13.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
13.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
13.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
13.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
13.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
13.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
13.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
13.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
13.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
13.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
13.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
13.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
13.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
13.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
13.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
13.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
12.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
12.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
12.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
12.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
12.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
12.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
12.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
12.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
12.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
12.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
12.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
12.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
12.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
12.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
12.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
11.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
11.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
11.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
11.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
11.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
11.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
11.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
10.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
10.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
10.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
10.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
10.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
10.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
10.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
10.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
10.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
9.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
9.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
9.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
8.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
8.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
7.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TIPRL is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.7
Number of samples
231
Samples
Sample
Description
TPM
DO23521
0 years, male, NA, stage:3, alive, 1110 days
44.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
43.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
41.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
38.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
38.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
38.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
36.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
35.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
34.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
32.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
32.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
32.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
31.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
31.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
31.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
31.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
30.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
30.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
29.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
29.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
29.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
29.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
28.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
27.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
27.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
27.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
27.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
27.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
27.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
27.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
27.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
26.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
26.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
26.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
26.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
26.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
26.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
26.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
26.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
25.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
25.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
25.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
25.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
25.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
24.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
24.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
24.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
24.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
24.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
24.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
24.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
24.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
24.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
23.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
23.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
23.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
23.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
23.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
23.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
23.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
22.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
22.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
22.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
22.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
22.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
22.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
21.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
21.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
21.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
21.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
21.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
21.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
21.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
21.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
21.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
20.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
20.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
20.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
20.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
20.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
20.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
20.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
20.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
20.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
20.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
20.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
20.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
20.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
19.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
19.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
19.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
19.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
19.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
19.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
19.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
19.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
18.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
18.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
18.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
18.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
18.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
18.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
18.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
18.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
18.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
17.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
17.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
17.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
17.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
17.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
17.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
17.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
17.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
17.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
17.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
17.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
17.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
17.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
16.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
16.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
16.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
16.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
16.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
16.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
16.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
16.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
16.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
16.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
16.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
16.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
16.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
16.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
15.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
15.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
15.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
15.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
15.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
15.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
15.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
15.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
15.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
15.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
15.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
15.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
14.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
14.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
14.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
14.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
14.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
14.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
14.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
14.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
14.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
14.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
14.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
14.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
14.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
13.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
13.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
13.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
13.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
13.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
13.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
12.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
12.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
12.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
12.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
12.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
12.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
11.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
11.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
10.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
10.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
10.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
10.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
9.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
745
Tumor
1.4
777
Tumor
1.4
957
Tumor
1.4
523
Tumor
1.4
425
Tumor
1.0
123
Tumor
1.0
724
Normal
0.9
131
Tumor
0.9
533
Tumor
0.9
737
Tumor
0.8
1027
Tumor
0.8
527
Tumor
0.8
283
Tumor
0.8
727
Tumor
0.8
943
Tumor
0.7
1043
Tumor
0.7
977
Tumor
0.7
427
Tumor
0.7
851
Tumor
0.7
147
Tumor
0.7
921
Tumor
0.7
743
Tumor
0.7
515
Tumor
0.6
125
Tumor
0.6
537
Tumor
0.6
953
Tumor
0.6
1021
Tumor
0.6
553
Tumor
0.6
663
Tumor
0.6
1025
Tumor
0.6
211
Tumor
0.6
965
Tumor
0.6
545
Tumor
0.6
481
Tumor
0.5
865
Tumor
0.5
393
Tumor
0.5
1031
Tumor
0.5
817
Tumor
0.5
463
Tumor
0.5
435
Tumor
0.5
257
Tumor
0.5
1013
Tumor
0.5
473
Tumor
0.5
721
Tumor
0.5
951
Tumor
0.4
713
Tumor
0.4
471
Tumor
0.4
517
Tumor
0.4
525
Tumor
0.4
285
Tumor
0.4
617
Tumor
0.4
975
Tumor
0.4
227
Tumor
0.4
445
Tumor
0.4
647
Tumor
0.4
447
Tumor
0.3
327
Tumor
0.3
411
Tumor
0.3
881
Tumor
0.3
911
Tumor
0.3
357
Tumor
0.3
635
Tumor
0.3
497
Tumor
0.3
141
Tumor
0.3
917
Tumor
0.3
477
Tumor
0.3
493
Tumor
0.3
271
Tumor
0.3
863
Tumor
0.3
415
Tumor
0.3
877
Tumor
0.3
813
Tumor
0.3
191
Tumor
0.3
213
Tumor
0.3
277
Tumor
0.3
857
Tumor
0.2
567
Tumor
0.2
715
Tumor
0.2
313
Tumor
0.2
697
Tumor
0.2
491
Tumor
0.2
355
Tumor
0.2
952
Normal
0.2
746
Normal
0.2
923
Tumor
0.2
387
Tumor
0.2
738
Normal
0.2
483
Tumor
0.2
823
Tumor
0.2
873
Tumor
0.2
573
Tumor
0.2
915
Tumor
0.1
785
Tumor
0.1
385
Tumor
0.1
741
Tumor
0.1
1046
Normal
0.1
966
Normal
0.1
171
Tumor
0.1
983
Tumor
0.1
461
Tumor
0.1
1026
Normal
0.1
916
Normal
0.1
137
Tumor
0.1
955
Tumor
0.1
223
Tumor
0.1
728
Normal
0.1
1022
Normal
0.1
723
Tumor
0.1
627
Tumor
0.1
161
Tumor
0.1
685
Tumor
0.1
778
Normal
0.1
861
Tumor
0.1
472
Normal
0.1
221
Tumor
0.0
924
Normal
0.0
913
Tumor
0.0
661
Tumor
0.0
375
Tumor
0.0
1044
Normal
0.0
1041
Tumor
0.0
912
Normal
0.0
455
Tumor
0.0
756
Normal
0.0
956
Normal
0.0
938
Normal
0.0
918
Normal
0.0
926
Normal
0.0
518
Normal
0.0
297
Tumor
0.0
482
Normal
0.0
958
Normal
0.0
513
Tumor
0.0
571
Tumor
0.0
536
Normal
0.0
867
Tumor
0.0
742
Normal
0.0
554
Normal
0.0
1028
Normal
0.0
922
Normal
0.0
755
Tumor
0.0
816
Normal
0.0
883
Tumor
0.0
478
Normal
0.0
641
Tumor
0.0
492
Normal
0.0
862
Normal
-0.1
815
Tumor
-0.1
535
Tumor
-0.1
474
Normal
-0.1
968
Normal
-0.1
944
Normal
-0.1
416
Normal
-0.1
884
Normal
-0.1
716
Normal
-0.1
448
Normal
-0.1
212
Normal
-0.1
187
Tumor
-0.1
852
Normal
-0.1
516
Normal
-0.1
714
Normal
-0.1
383
Tumor
-0.1
494
Normal
-0.1
331
Tumor
-0.1
1042
Normal
-0.1
451
Tumor
-0.1
615
Tumor
-0.1
967
Tumor
-0.1
443
Tumor
-0.1
628
Normal
-0.1
557
Tumor
-0.1
814
Normal
-0.1
696
Normal
-0.1
412
Normal
-0.1
391
Tumor
-0.1
963
Tumor
-0.1
343
Tumor
-0.1
363
Tumor
-0.1
546
Normal
-0.1
858
Normal
-0.1
698
Normal
-0.1
864
Normal
-0.1
351
Tumor
-0.1
185
Tumor
-0.1
874
Normal
-0.1
616
Normal
-0.1
868
Normal
-0.1
113
Tumor
-0.1
467
Tumor
-0.1
824
Normal
-0.1
1045
Tumor
-0.1
534
Normal
-0.1
364
Normal
-0.1
228
Normal
-0.1
981
Tumor
-0.2
978
Normal
-0.2
925
Tumor
-0.2
866
Normal
-0.2
818
Normal
-0.2
286
Normal
-0.2
524
Normal
-0.2
284
Normal
-0.2
484
Normal
-0.2
487
Tumor
-0.2
558
Normal
-0.2
538
Normal
-0.2
431
Tumor
-0.2
1016
Normal
-0.2
786
Normal
-0.2
878
Normal
-0.2
186
Normal
-0.2
464
Normal
-0.2
1032
Normal
-0.2
328
Normal
-0.2
976
Normal
-0.2
1014
Normal
-0.2
456
Normal
-0.2
914
Normal
-0.2
1015
Tumor
-0.2
361
Tumor
-0.2
964
Normal
-0.2
882
Normal
-0.2
135
Tumor
-0.2
365
Tumor
-0.2
145
Tumor
-0.2
528
Normal
-0.2
954
Normal
-0.2
664
Normal
-0.2
982
Normal
-0.2
686
Normal
-0.2
665
Tumor
-0.2
722
Normal
-0.2
452
Normal
-0.2
466
Normal
-0.3
356
Normal
-0.3
188
Normal
-0.3
224
Normal
-0.3
488
Normal
-0.3
386
Normal
-0.3
572
Normal
-0.3
695
Tumor
-0.3
126
Normal
-0.3
937
Tumor
-0.3
114
Normal
-0.3
514
Normal
-0.3
984
Normal
-0.3
642
Normal
-0.3
498
Normal
-0.3
261
Tumor
-0.3
434
Normal
-0.3
366
Normal
-0.3
526
Normal
-0.3
314
Normal
-0.3
426
Normal
-0.3
671
Tumor
-0.3
132
Normal
-0.3
218
Normal
-0.3
376
Normal
-0.3
648
Normal
-0.3
618
Normal
-0.3
436
Normal
-0.3
142
Normal
-0.3
468
Normal
-0.3
428
Normal
-0.3
432
Normal
-0.3
162
Normal
-0.3
563
Tumor
-0.4
195
Tumor
-0.4
172
Normal
-0.4
341
Tumor
-0.4
666
Normal
-0.4
124
Normal
-0.4
462
Normal
-0.4
568
Normal
-0.4
214
Normal
-0.4
222
Normal
-0.4
138
Normal
-0.4
446
Normal
-0.4
278
Normal
-0.4
262
Normal
-0.4
217
Tumor
-0.4
148
Normal
-0.4
421
Tumor
-0.4
396
Normal
-0.4
353
Tumor
-0.4
744
Normal
-0.4
424
Normal
-0.4
362
Normal
-0.4
344
Normal
-0.4
136
Normal
-0.4
388
Normal
-0.4
272
Normal
-0.4
433
Tumor
-0.4
662
Normal
-0.4
564
Normal
-0.4
111
Normal
-0.5
196
Normal
-0.5
394
Normal
-0.5
146
Normal
-0.5
444
Normal
-0.5
465
Tumor
-0.5
258
Normal
-0.5
298
Normal
-0.5
422
Normal
-0.5
413
Tumor
-0.5
367
Tumor
-0.5
392
Normal
-0.5
267
Tumor
-0.5
414
Normal
-0.5
636
Normal
-0.5
395
Tumor
-0.5
574
Normal
-0.5
342
Normal
-0.5
368
Normal
-0.5
312
Normal
-0.5
268
Normal
-0.5
231
Tumor
-0.5
192
Normal
-0.5
332
Normal
-0.5
311
Tumor
-0.6
232
Normal
-0.6
384
Normal
-0.6
128
Normal
-0.6
112
Tumor
-0.6
672
Normal
-0.6
358
Normal
-0.6
423
Tumor
-0.6
127
Tumor
-0.9
352
Normal
-0.9
354
Normal
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.