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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ALDH9A1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
52.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
298.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
237.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
183.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
142.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
138.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
137.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
134.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
133.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
125.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
118.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
116.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
113.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
109.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
109.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
108.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
107.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
106.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
106.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
105.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
104.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
101.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
99.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
98.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
95.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
95.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
95.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
94.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
92.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
91.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
91.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
89.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
87.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
86.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
86.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
86.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
86.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
86.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
85.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
83.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
83.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
83.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
83.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
82.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
82.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
82.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
80.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
80.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
80.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
80.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
79.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
79.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
78.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
78.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
78.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
78.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
77.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
77.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
77.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
76.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
75.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
75.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
74.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
74.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
73.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
73.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
73.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
72.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
72.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
71.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
71.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
70.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
70.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
70.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
69.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
69.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
69.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
69.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
68.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
68.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
68.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
68.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
68.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
68.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
67.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
67.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
67.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
66.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
66.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
66.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
65.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
65.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
65.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
65.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
64.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
64.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
64.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
64.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
64.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
64.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
63.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
63.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
63.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
63.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
62.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
62.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
62.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
62.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
62.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
61.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
60.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
60.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
60.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
60.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
60.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
59.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
59.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
59.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
58.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
58.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
58.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
58.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
58.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
57.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
57.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
57.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
57.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
57.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
57.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
56.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
56.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
56.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
56.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
56.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
56.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
56.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
56.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
56.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
55.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
55.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
55.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
55.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
55.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
55.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
55.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
54.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
54.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
54.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
54.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
54.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
54.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
52.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
52.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
52.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
52.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
52.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
52.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
52.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
52.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
52.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
52.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
50.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
50.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
50.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
50.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
50.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
50.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
50.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
50.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
50.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
49.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
49.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
49.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
49.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
48.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
48.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
48.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
48.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
48.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
48.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
48.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
48.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
48.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
48.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
47.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
47.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
47.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
47.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
47.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
47.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
47.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
46.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
45.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
45.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
45.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
45.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
45.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
45.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
44.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
44.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
44.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
44.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
44.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
44.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
43.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
43.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
43.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
43.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
43.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
43.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
42.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
42.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
42.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
42.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
42.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
42.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
42.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
42.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
41.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
41.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
41.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
41.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
41.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
41.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
41.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
41.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
41.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
41.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
41.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
41.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
40.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
40.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
40.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
40.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
40.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
39.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
39.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
38.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
38.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
38.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
38.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
37.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
37.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
37.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
37.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
37.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
37.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
37.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
36.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
36.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
35.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
35.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
35.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
35.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
35.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
34.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
34.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
34.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
33.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
33.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
33.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
33.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
33.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
32.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
32.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
32.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
32.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
32.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
31.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
31.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
31.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
31.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
31.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
30.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
30.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
30.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
30.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
30.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
29.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
29.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
29.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
29.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
28.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
28.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
28.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
28.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
27.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
27.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
27.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
27.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
27.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
27.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
27.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
27.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
27.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
27.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
27.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
26.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
26.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
26.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
26.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
26.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
26.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
26.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
25.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
25.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
25.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
25.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
25.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
25.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
24.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
24.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
24.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
24.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
24.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
24.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
24.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
24.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
24.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
24.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
24.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
23.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
23.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
23.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
23.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
23.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
22.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
22.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
22.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
22.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
22.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
22.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
20.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
20.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
20.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
19.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
18.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
18.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
18.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
18.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
17.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
17.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
17.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
16.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
15.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
15.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
14.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
14.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
14.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
14.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
14.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
11.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
10.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
10.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
9.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
7.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ALDH9A1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
57.4
Number of samples
231
Samples
Sample
Description
TPM
DO48751
0 years, male, NA, stage:2, dead, 480 days
143.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
142.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
140.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
134.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
128.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
125.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
114.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
114.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
111.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
105.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
101.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
100.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
100.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
99.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
99.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
98.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
97.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
97.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
95.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
93.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
92.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
92.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
89.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
87.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
86.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
85.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
83.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
82.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
82.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
82.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
81.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
81.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
80.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
80.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
80.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
80.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
79.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
79.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
79.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
79.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
78.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
77.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
77.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
76.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
75.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
75.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
75.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
75.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
74.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
72.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
71.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
71.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
70.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
70.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
70.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
70.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
69.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
69.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
68.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
68.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
68.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
68.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
67.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
67.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
66.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
66.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
66.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
65.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
65.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
64.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
64.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
63.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
63.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
63.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
63.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
62.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
62.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
62.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
62.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
61.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
61.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
61.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
61.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
60.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
60.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
60.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
60.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
60.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
59.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
59.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
59.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
59.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
59.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
58.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
58.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
58.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
58.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
57.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
57.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
57.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
57.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
57.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
56.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
56.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
56.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
55.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
55.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
55.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
55.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
55.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
54.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
54.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
54.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
54.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
54.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
54.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
53.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
53.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
53.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
53.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
52.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
52.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
52.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
51.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
51.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
51.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
51.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
50.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
50.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
50.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
50.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
49.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
49.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
49.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
49.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
49.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
48.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
48.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
48.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
48.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
48.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
48.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
48.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
47.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
47.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
47.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
46.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
46.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
46.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
45.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
45.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
45.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
44.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
44.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
44.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
44.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
43.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
43.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
43.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
43.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
43.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
42.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
42.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
42.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
42.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
42.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
42.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
42.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
41.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
41.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
41.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
41.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
41.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
41.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
41.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
41.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
41.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
40.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
40.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
40.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
40.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
39.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
39.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
39.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
39.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
38.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
38.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
38.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
38.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
37.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
37.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
36.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
35.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
34.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
34.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
34.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
34.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
33.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
33.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
33.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
32.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
32.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
31.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
31.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
31.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
30.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
30.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
30.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
30.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
30.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
30.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
29.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
29.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
29.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
27.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
27.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
27.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
27.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
26.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
26.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
24.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
24.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
23.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
23.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
23.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
19.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
18.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
17.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
13.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
13.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
342
Normal
0.8
436
Normal
0.7
128
Normal
0.7
742
Normal
0.6
746
Normal
0.6
627
Tumor
0.6
738
Normal
0.6
862
Normal
0.6
452
Normal
0.6
698
Normal
0.6
728
Normal
0.6
744
Normal
0.5
222
Normal
0.5
462
Normal
0.5
952
Normal
0.5
546
Normal
0.5
298
Normal
0.5
1022
Normal
0.5
412
Normal
0.5
472
Normal
0.5
982
Normal
0.5
818
Normal
0.5
111
Normal
0.5
924
Normal
0.5
723
Tumor
0.5
911
Tumor
0.4
172
Normal
0.4
714
Normal
0.4
448
Normal
0.4
1026
Normal
0.4
186
Normal
0.4
196
Normal
0.4
484
Normal
0.4
426
Normal
0.4
878
Normal
0.4
534
Normal
0.4
482
Normal
0.4
816
Normal
0.4
938
Normal
0.4
314
Normal
0.4
868
Normal
0.4
824
Normal
0.4
1016
Normal
0.4
445
Tumor
0.4
716
Normal
0.4
518
Normal
0.4
914
Normal
0.4
332
Normal
0.4
278
Normal
0.4
422
Normal
0.3
356
Normal
0.3
618
Normal
0.3
358
Normal
0.3
428
Normal
0.3
286
Normal
0.3
944
Normal
0.3
777
Tumor
0.3
648
Normal
0.3
366
Normal
0.3
258
Normal
0.3
1046
Normal
0.3
966
Normal
0.3
955
Tumor
0.3
696
Normal
0.3
964
Normal
0.3
446
Normal
0.3
488
Normal
0.3
481
Tumor
0.3
464
Normal
0.3
664
Normal
0.3
376
Normal
0.3
858
Normal
0.3
866
Normal
0.3
132
Normal
0.3
882
Normal
0.3
114
Normal
0.3
918
Normal
0.3
424
Normal
0.3
272
Normal
0.3
232
Normal
0.3
554
Normal
0.3
778
Normal
0.2
786
Normal
0.2
344
Normal
0.2
414
Normal
0.2
756
Normal
0.2
864
Normal
0.2
218
Normal
0.2
162
Normal
0.2
146
Normal
0.2
474
Normal
0.2
364
Normal
0.2
642
Normal
0.2
915
Tumor
0.2
416
Normal
0.2
148
Normal
0.2
867
Tumor
0.2
432
Normal
0.2
328
Normal
0.2
515
Tumor
0.2
922
Normal
0.2
465
Tumor
0.2
466
Normal
0.2
636
Normal
0.2
394
Normal
0.2
956
Normal
0.2
722
Normal
0.2
228
Normal
0.2
1028
Normal
0.2
666
Normal
0.1
456
Normal
0.1
327
Tumor
0.1
138
Normal
0.1
745
Tumor
0.1
616
Normal
0.1
1044
Normal
0.1
262
Normal
0.1
214
Normal
0.1
142
Normal
0.1
1027
Tumor
0.1
976
Normal
0.1
662
Normal
0.1
912
Normal
0.1
312
Normal
0.1
528
Normal
0.1
741
Tumor
0.1
1032
Normal
0.1
392
Normal
0.1
615
Tumor
0.1
526
Normal
0.1
388
Normal
0.1
874
Normal
0.1
354
Normal
0.1
1045
Tumor
0.1
574
Normal
0.1
686
Normal
0.1
564
Normal
0.1
884
Normal
0.0
212
Normal
0.0
136
Normal
0.0
124
Normal
0.0
628
Normal
0.0
284
Normal
0.0
968
Normal
0.0
386
Normal
0.0
1014
Normal
0.0
926
Normal
0.0
568
Normal
0.0
435
Tumor
0.0
513
Tumor
0.0
434
Normal
0.0
396
Normal
0.0
984
Normal
0.0
352
Normal
0.0
514
Normal
0.0
415
Tumor
0.0
147
Tumor
0.0
468
Normal
-0.1
1042
Normal
-0.1
126
Normal
-0.1
958
Normal
-0.1
516
Normal
-0.1
572
Normal
-0.1
852
Normal
-0.1
494
Normal
-0.1
857
Tumor
-0.1
954
Normal
-0.1
1043
Tumor
-0.1
916
Normal
-0.1
423
Tumor
-0.1
368
Normal
-0.1
188
Normal
-0.1
538
Normal
-0.1
672
Normal
-0.1
141
Tumor
-0.2
125
Tumor
-0.2
365
Tumor
-0.2
663
Tumor
-0.2
224
Normal
-0.2
461
Tumor
-0.2
257
Tumor
-0.2
491
Tumor
-0.2
357
Tumor
-0.2
161
Tumor
-0.2
268
Normal
-0.2
523
Tumor
-0.2
127
Tumor
-0.2
863
Tumor
-0.2
427
Tumor
-0.2
785
Tumor
-0.2
755
Tumor
-0.2
978
Normal
-0.3
192
Normal
-0.3
137
Tumor
-0.3
477
Tumor
-0.3
487
Tumor
-0.3
953
Tumor
-0.3
977
Tumor
-0.3
981
Tumor
-0.3
558
Normal
-0.3
362
Normal
-0.3
135
Tumor
-0.3
261
Tumor
-0.3
191
Tumor
-0.3
444
Normal
-0.3
478
Normal
-0.3
527
Tumor
-0.3
873
Tumor
-0.3
267
Tumor
-0.3
721
Tumor
-0.3
715
Tumor
-0.3
185
Tumor
-0.4
393
Tumor
-0.4
861
Tumor
-0.4
313
Tumor
-0.4
727
Tumor
-0.4
492
Normal
-0.4
536
Normal
-0.4
145
Tumor
-0.4
425
Tumor
-0.4
217
Tumor
-0.4
957
Tumor
-0.4
1041
Tumor
-0.4
883
Tumor
-0.4
271
Tumor
-0.4
171
Tumor
-0.4
113
Tumor
-0.4
112
Tumor
-0.4
411
Tumor
-0.4
695
Tumor
-0.5
421
Tumor
-0.5
131
Tumor
-0.5
384
Normal
-0.5
524
Normal
-0.5
1013
Tumor
-0.5
823
Tumor
-0.5
431
Tumor
-0.5
483
Tumor
-0.5
195
Tumor
-0.5
123
Tumor
-0.5
737
Tumor
-0.6
463
Tumor
-0.6
231
Tumor
-0.6
361
Tumor
-0.6
557
Tumor
-0.6
433
Tumor
-0.6
571
Tumor
-0.6
451
Tumor
-0.6
925
Tumor
-0.6
913
Tumor
-0.6
498
Normal
-0.6
447
Tumor
-0.6
813
Tumor
-0.6
865
Tumor
-0.6
341
Tumor
-0.6
881
Tumor
-0.6
443
Tumor
-0.6
387
Tumor
-0.6
227
Tumor
-0.6
277
Tumor
-0.6
1031
Tumor
-0.7
617
Tumor
-0.7
1021
Tumor
-0.7
517
Tumor
-0.7
1015
Tumor
-0.7
471
Tumor
-0.7
553
Tumor
-0.7
943
Tumor
-0.7
685
Tumor
-0.7
355
Tumor
-0.7
814
Normal
-0.7
921
Tumor
-0.7
297
Tumor
-0.7
213
Tumor
-0.7
563
Tumor
-0.7
647
Tumor
-0.7
493
Tumor
-0.8
1025
Tumor
-0.8
963
Tumor
-0.8
635
Tumor
-0.8
975
Tumor
-0.8
187
Tumor
-0.8
375
Tumor
-0.8
533
Tumor
-0.8
221
Tumor
-0.8
353
Tumor
-0.8
917
Tumor
-0.9
383
Tumor
-0.9
363
Tumor
-0.9
545
Tumor
-0.9
223
Tumor
-0.9
473
Tumor
-0.9
413
Tumor
-0.9
743
Tumor
-1.0
665
Tumor
-1.0
724
Normal
-1.0
525
Tumor
-1.0
697
Tumor
-1.0
851
Tumor
-1.0
283
Tumor
-1.0
455
Tumor
-1.0
877
Tumor
-1.0
641
Tumor
-1.0
923
Tumor
-1.1
573
Tumor
-1.1
467
Tumor
-1.1
951
Tumor
-1.1
713
Tumor
-1.1
343
Tumor
-1.1
391
Tumor
-1.1
211
Tumor
-1.1
815
Tumor
-1.1
983
Tumor
-1.2
817
Tumor
-1.2
537
Tumor
-1.2
331
Tumor
-1.2
937
Tumor
-1.2
311
Tumor
-1.2
535
Tumor
-1.2
965
Tumor
-1.3
285
Tumor
-1.3
567
Tumor
-1.3
367
Tumor
-1.3
497
Tumor
-1.4
395
Tumor
-1.4
351
Tumor
-1.4
671
Tumor
-1.4
661
Tumor
-1.5
385
Tumor
-1.5
967
Tumor
-1.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
