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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSMA5 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
3.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
17.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
15.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
12.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
8.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
8.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
8.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
7.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
7.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
7.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
7.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
6.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
6.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
6.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
6.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
6.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
5.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
5.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
5.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
5.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
5.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
5.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
5.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
4.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
4.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
4.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
4.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
4.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
4.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
4.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
4.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
4.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
4.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
4.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
4.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
4.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
4.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
4.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
4.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
4.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
4.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
4.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
4.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
4.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
4.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
3.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
3.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
3.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
3.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
3.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
3.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
3.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
3.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
3.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
3.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
3.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
3.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
3.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
3.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
3.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
3.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
3.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
3.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
3.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
3.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
3.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
3.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
3.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
3.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
3.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
3.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
2.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
2.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
2.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
2.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
2.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
2.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
2.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
2.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
2.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
2.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
2.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
2.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
2.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
2.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
2.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
2.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
2.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
2.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
2.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
2.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
2.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
2.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
2.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
2.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
2.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
2.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
2.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
2.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
2.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
2.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
2.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
2.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
2.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
2.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
2.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
1.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
1.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
1.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
1.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
1.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
1.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
1.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
1.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
1.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
1.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSMA5 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.7
Number of samples
231
Samples
Sample
Description
TPM
DO23519
0 years, male, NA, stage:3, alive, 630 days
77.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
76.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
57.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
55.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
55.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
54.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
54.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
49.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
49.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
48.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
46.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
46.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
46.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
46.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
45.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
45.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
43.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
43.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
42.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
42.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
41.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
41.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
41.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
41.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
41.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
40.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
39.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
39.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
39.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
37.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
37.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
37.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
36.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
36.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
36.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
36.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
35.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
35.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
35.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
35.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
35.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
35.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
33.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
33.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
33.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
32.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
32.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
32.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
32.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
32.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
32.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
32.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
31.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
31.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
31.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
31.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
31.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
30.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
30.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
30.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
30.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
30.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
30.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
30.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
30.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
30.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
30.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
30.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
30.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
30.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
30.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
30.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
30.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
29.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
29.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
29.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
29.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
29.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
29.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
28.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
28.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
28.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
27.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
27.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
27.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
27.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
27.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
27.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
27.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
27.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
26.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
26.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
26.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
26.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
26.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
26.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
26.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
25.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
25.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
25.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
25.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
25.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
25.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
25.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
25.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
25.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
25.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
25.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
25.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
24.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
24.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
24.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
24.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
24.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
24.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
23.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
23.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
23.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
23.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
23.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
23.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
23.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
23.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
23.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
23.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
23.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
23.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
22.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
22.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
22.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
22.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
22.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
22.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
22.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
21.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
21.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
21.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
21.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
21.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
21.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
21.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
21.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
21.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
21.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
21.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
20.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
20.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
20.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
20.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
20.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
20.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
20.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
20.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
19.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
19.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
19.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
19.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
19.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
19.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
18.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
18.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
18.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
18.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
18.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
18.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
18.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
18.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
18.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
18.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
18.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
18.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
17.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
17.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
17.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
17.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
17.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
17.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
17.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
17.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
17.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
17.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
16.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
16.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
16.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
16.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
15.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
15.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
15.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
15.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
14.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
14.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
14.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
14.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
14.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
14.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
13.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
13.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
13.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
13.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
13.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
12.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
12.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
12.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
11.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
11.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
10.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
10.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
8.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
8.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
777
Tumor
0.6
957
Tumor
0.4
746
Normal
0.4
952
Normal
0.4
738
Normal
0.4
327
Tumor
0.4
436
Normal
0.3
432
Normal
0.3
513
Tumor
0.3
745
Tumor
0.3
128
Normal
0.3
1026
Normal
0.3
342
Normal
0.3
862
Normal
0.3
1022
Normal
0.3
755
Tumor
0.3
222
Normal
0.3
218
Normal
0.3
456
Normal
0.3
416
Normal
0.3
368
Normal
0.3
955
Tumor
0.3
714
Normal
0.3
966
Normal
0.3
132
Normal
0.3
723
Tumor
0.3
1013
Tumor
0.3
558
Normal
0.3
286
Normal
0.3
695
Tumor
0.3
366
Normal
0.3
615
Tumor
0.3
212
Normal
0.3
742
Normal
0.3
698
Normal
0.3
186
Normal
0.2
484
Normal
0.2
196
Normal
0.2
411
Tumor
0.2
362
Normal
0.2
572
Normal
0.2
778
Normal
0.2
728
Normal
0.2
564
Normal
0.2
426
Normal
0.2
568
Normal
0.2
924
Normal
0.2
356
Normal
0.2
925
Tumor
0.2
518
Normal
0.2
648
Normal
0.2
616
Normal
0.2
756
Normal
0.2
914
Normal
0.2
136
Normal
0.2
358
Normal
0.2
573
Tumor
0.2
172
Normal
0.2
148
Normal
0.2
515
Tumor
0.2
741
Tumor
0.2
376
Normal
0.2
228
Normal
0.2
386
Normal
0.2
298
Normal
0.2
864
Normal
0.2
663
Tumor
0.2
878
Normal
0.2
868
Normal
0.2
448
Normal
0.2
162
Normal
0.2
412
Normal
0.2
938
Normal
0.2
664
Normal
0.2
452
Normal
0.2
278
Normal
0.2
414
Normal
0.2
786
Normal
0.2
858
Normal
0.2
434
Normal
0.2
328
Normal
0.2
258
Normal
0.2
214
Normal
0.2
353
Tumor
0.2
1015
Tumor
0.2
1027
Tumor
0.2
861
Tumor
0.2
114
Normal
0.2
388
Normal
0.2
956
Normal
0.2
627
Tumor
0.2
818
Normal
0.2
866
Normal
0.2
284
Normal
0.1
696
Normal
0.1
272
Normal
0.1
926
Normal
0.1
944
Normal
0.1
147
Tumor
0.1
394
Normal
0.1
716
Normal
0.1
142
Normal
0.1
662
Normal
0.1
446
Normal
0.1
464
Normal
0.1
111
Normal
0.1
262
Normal
0.1
312
Normal
0.1
1044
Normal
0.1
722
Normal
0.1
422
Normal
0.1
574
Normal
0.1
514
Normal
0.1
816
Normal
0.1
396
Normal
0.1
912
Normal
0.1
131
Tumor
0.1
953
Tumor
0.1
313
Tumor
0.1
824
Normal
0.1
364
Normal
0.1
482
Normal
0.1
138
Normal
0.1
534
Normal
0.1
528
Normal
0.1
424
Normal
0.1
546
Normal
0.1
874
Normal
0.1
146
Normal
0.1
618
Normal
0.1
1032
Normal
0.1
124
Normal
0.1
635
Tumor
0.1
428
Normal
0.1
354
Normal
0.1
188
Normal
0.1
922
Normal
0.1
113
Tumor
0.1
488
Normal
0.1
737
Tumor
0.1
494
Normal
0.1
355
Tumor
0.1
423
Tumor
0.1
884
Normal
0.1
516
Normal
0.1
666
Normal
0.1
1021
Tumor
0.1
466
Normal
0.1
1016
Normal
0.1
217
Tumor
0.1
477
Tumor
0.1
628
Normal
0.1
642
Normal
0.1
964
Normal
0.1
873
Tumor
0.1
686
Normal
0.1
472
Normal
0.1
224
Normal
0.1
554
Normal
0.1
462
Normal
0.1
951
Tumor
0.1
332
Normal
0.1
882
Normal
0.1
968
Normal
0.1
1042
Normal
0.1
958
Normal
0.1
982
Normal
0.1
1028
Normal
0.1
863
Tumor
0.1
617
Tumor
0.0
126
Normal
0.0
392
Normal
0.0
865
Tumor
0.0
918
Normal
0.0
867
Tumor
0.0
314
Normal
0.0
533
Tumor
0.0
232
Normal
0.0
916
Normal
0.0
461
Tumor
0.0
744
Normal
0.0
344
Normal
0.0
976
Normal
0.0
415
Tumor
0.0
384
Normal
0.0
981
Tumor
0.0
724
Normal
0.0
161
Tumor
0.0
468
Normal
0.0
365
Tumor
0.0
127
Tumor
0.0
213
Tumor
0.0
1014
Normal
0.0
526
Normal
0.0
361
Tumor
0.0
923
Tumor
0.0
727
Tumor
0.0
977
Tumor
0.0
852
Normal
0.0
195
Tumor
0.0
857
Tumor
0.0
785
Tumor
0.0
1046
Normal
0.0
352
Normal
0.0
474
Normal
0.0
721
Tumor
0.0
112
Tumor
0.0
431
Tumor
0.0
911
Tumor
0.0
954
Normal
0.0
978
Normal
0.0
387
Tumor
0.0
123
Tumor
0.0
571
Tumor
0.0
647
Tumor
0.0
557
Tumor
-0.1
268
Normal
-0.1
444
Normal
-0.1
192
Normal
-0.1
915
Tumor
-0.1
223
Tumor
-0.1
636
Normal
-0.1
261
Tumor
-0.1
661
Tumor
-0.1
393
Tumor
-0.1
211
Tumor
-0.1
523
Tumor
-0.1
391
Tumor
-0.1
563
Tumor
-0.1
553
Tumor
-0.1
445
Tumor
-0.1
443
Tumor
-0.1
525
Tumor
-0.1
537
Tumor
-0.1
492
Normal
-0.1
967
Tumor
-0.1
984
Normal
-0.1
341
Tumor
-0.1
451
Tumor
-0.1
567
Tumor
-0.1
1043
Tumor
-0.1
185
Tumor
-0.1
1045
Tumor
-0.1
383
Tumor
-0.1
493
Tumor
-0.1
524
Normal
-0.1
257
Tumor
-0.1
814
Normal
-0.1
823
Tumor
-0.1
227
Tumor
-0.1
145
Tumor
-0.1
375
Tumor
-0.1
367
Tumor
-0.1
538
Normal
-0.1
191
Tumor
-0.2
311
Tumor
-0.2
665
Tumor
-0.2
672
Normal
-0.2
141
Tumor
-0.2
125
Tumor
-0.2
1031
Tumor
-0.2
413
Tumor
-0.2
433
Tumor
-0.2
487
Tumor
-0.2
536
Normal
-0.2
517
Tumor
-0.2
917
Tumor
-0.2
481
Tumor
-0.2
435
Tumor
-0.2
715
Tumor
-0.2
357
Tumor
-0.2
498
Normal
-0.2
497
Tumor
-0.2
685
Tumor
-0.2
171
Tumor
-0.2
363
Tumor
-0.2
943
Tumor
-0.2
913
Tumor
-0.2
478
Normal
-0.2
851
Tumor
-0.2
137
Tumor
-0.2
277
Tumor
-0.2
1041
Tumor
-0.3
425
Tumor
-0.3
815
Tumor
-0.3
135
Tumor
-0.3
465
Tumor
-0.3
187
Tumor
-0.3
1025
Tumor
-0.3
483
Tumor
-0.3
467
Tumor
-0.3
965
Tumor
-0.3
983
Tumor
-0.3
231
Tumor
-0.3
963
Tumor
-0.3
937
Tumor
-0.3
813
Tumor
-0.3
447
Tumor
-0.3
975
Tumor
-0.3
491
Tumor
-0.3
527
Tumor
-0.3
713
Tumor
-0.3
343
Tumor
-0.3
921
Tumor
-0.3
455
Tumor
-0.3
385
Tumor
-0.3
471
Tumor
-0.3
883
Tumor
-0.3
421
Tumor
-0.3
351
Tumor
-0.4
271
Tumor
-0.4
283
Tumor
-0.4
697
Tumor
-0.4
297
Tumor
-0.4
427
Tumor
-0.4
267
Tumor
-0.4
221
Tumor
-0.4
395
Tumor
-0.4
331
Tumor
-0.4
473
Tumor
-0.4
881
Tumor
-0.4
817
Tumor
-0.4
535
Tumor
-0.4
545
Tumor
-0.5
877
Tumor
-0.5
743
Tumor
-0.5
641
Tumor
-0.5
671
Tumor
-0.5
463
Tumor
-0.6
285
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
