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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IGSF3 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
2.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
36.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
35.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
28.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
25.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
24.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
22.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
21.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
19.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
15.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
12.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
12.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
12.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
11.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
11.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
10.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
10.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
9.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
8.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
8.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
8.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
8.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
8.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
7.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
6.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
6.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
6.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
5.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
5.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
5.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
4.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
4.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
4.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
4.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
4.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
3.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
3.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
3.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
3.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
3.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
3.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
3.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
3.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
3.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
3.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
3.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
3.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
2.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
2.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
2.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
2.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
2.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
2.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
2.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
2.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
2.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
2.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
2.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
2.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
2.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
2.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
2.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
2.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
2.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
2.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
2.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
2.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
2.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
2.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
2.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
2.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
1.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
1.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
1.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
1.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
1.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
1.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
1.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
1.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
1.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
1.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
1.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
1.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
1.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
1.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
1.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
1.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
1.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
1.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
1.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
1.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
1.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
1.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
1.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
1.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
1.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
1.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
1.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
1.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
1.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
1.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
1.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
1.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
1.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
1.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
1.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
1.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IGSF3 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
2.7
Number of samples
231
Samples
Sample
Description
TPM
DO45303
0 years, female, NA, stage:3, alive, 990 days
27.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
19.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
14.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
12.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
12.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
11.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
11.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
9.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
8.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
8.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
8.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
7.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
7.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
7.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
7.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
7.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
6.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
6.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
6.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
6.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
6.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
6.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
5.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
5.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
5.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
5.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
5.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
5.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
4.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
4.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
4.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
4.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
4.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
4.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
4.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
4.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
4.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
3.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
3.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
3.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
3.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
3.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
3.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
3.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
3.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
3.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
3.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
3.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
3.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
3.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
3.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
3.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
2.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
2.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
2.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
2.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
2.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
2.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
2.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
2.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
2.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
2.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
2.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
2.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
2.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
2.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
2.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
2.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
2.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
2.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
2.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
2.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
2.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
2.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
2.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
2.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
2.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
2.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
2.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
1.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
1.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
1.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
1.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
1.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
1.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
1.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
1.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
1.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
1.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
1.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
1.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
1.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
1.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
1.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
1.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
1.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
1.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
1.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
1.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
1.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
1.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
1.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
1.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
1.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
1.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
1.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
1.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
1.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
1.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
1.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
1.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
1.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
1.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
1.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
1.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
1.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
1.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
1.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
1.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
0.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
0.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
0.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
0.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
0.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
0.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
0.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
0.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
0.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
0.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
0.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
0.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
425
Tumor
2.5
387
Tumor
2.2
953
Tumor
1.8
393
Tumor
1.8
537
Tumor
1.7
413
Tumor
1.6
535
Tumor
1.4
367
Tumor
1.2
533
Tumor
1.1
257
Tumor
1.0
186
Normal
0.9
383
Tumor
0.9
391
Tumor
0.9
443
Tumor
0.8
727
Tumor
0.8
361
Tumor
0.7
737
Tumor
0.7
162
Normal
0.7
471
Tumor
0.7
375
Tumor
0.7
617
Tumor
0.7
851
Tumor
0.7
172
Normal
0.7
487
Tumor
0.7
925
Tumor
0.7
125
Tumor
0.6
1043
Tumor
0.6
341
Tumor
0.6
937
Tumor
0.6
148
Normal
0.6
327
Tumor
0.6
137
Tumor
0.6
1027
Tumor
0.6
351
Tumor
0.5
1013
Tumor
0.5
127
Tumor
0.5
983
Tumor
0.5
355
Tumor
0.5
385
Tumor
0.5
128
Normal
0.4
921
Tumor
0.4
223
Tumor
0.4
662
Normal
0.4
627
Tumor
0.4
873
Tumor
0.4
384
Normal
0.3
444
Normal
0.3
477
Tumor
0.3
188
Normal
0.3
426
Normal
0.3
357
Tumor
0.3
388
Normal
0.3
527
Tumor
0.3
965
Tumor
0.3
672
Normal
0.3
447
Tumor
0.2
483
Tumor
0.2
113
Tumor
0.2
432
Normal
0.2
526
Normal
0.2
126
Normal
0.2
187
Tumor
0.2
664
Normal
0.1
665
Tumor
0.1
395
Tumor
0.1
396
Normal
0.1
514
Normal
0.1
145
Tumor
0.1
386
Normal
0.1
666
Normal
0.1
123
Tumor
0.1
135
Tumor
0.1
363
Tumor
0.1
423
Tumor
0.1
424
Normal
0.1
141
Tumor
0.0
523
Tumor
0.0
394
Normal
0.0
411
Tumor
0.0
112
Tumor
0.0
963
Tumor
0.0
446
Normal
0.0
663
Tumor
0.0
497
Tumor
0.0
414
Normal
0.0
461
Tumor
0.0
285
Tumor
0.0
671
Tumor
0.0
923
Tumor
0.0
267
Tumor
0.0
185
Tumor
0.0
422
Normal
0.0
343
Tumor
-0.1
147
Tumor
-0.1
415
Tumor
-0.1
124
Normal
-0.1
111
Normal
-0.1
428
Normal
-0.1
392
Normal
-0.1
431
Tumor
-0.1
478
Normal
-0.1
917
Tumor
-0.1
648
Normal
-0.1
525
Tumor
-0.1
661
Tumor
-0.1
1021
Tumor
-0.1
513
Tumor
-0.1
114
Normal
-0.1
741
Tumor
-0.1
743
Tumor
-0.2
484
Normal
-0.2
1025
Tumor
-0.2
421
Tumor
-0.2
498
Normal
-0.2
524
Normal
-0.2
365
Tumor
-0.2
517
Tumor
-0.2
283
Tumor
-0.2
545
Tumor
-0.2
362
Normal
-0.2
436
Normal
-0.3
492
Normal
-0.3
161
Tumor
-0.3
368
Normal
-0.3
231
Tumor
-0.3
1032
Normal
-0.3
967
Tumor
-0.3
171
Tumor
-0.3
957
Tumor
-0.3
286
Normal
-0.3
227
Tumor
-0.3
212
Normal
-0.3
823
Tumor
-0.3
516
Normal
-0.3
224
Normal
-0.3
534
Normal
-0.3
518
Normal
-0.3
728
Normal
-0.3
494
Normal
-0.3
211
Tumor
-0.4
366
Normal
-0.4
491
Tumor
-0.4
268
Normal
-0.4
538
Normal
-0.4
1015
Tumor
-0.4
723
Tumor
-0.4
488
Normal
-0.4
515
Tumor
-0.4
1022
Normal
-0.4
1031
Tumor
-0.4
493
Tumor
-0.4
724
Normal
-0.4
738
Normal
-0.4
647
Tumor
-0.5
943
Tumor
-0.5
968
Normal
-0.5
816
Normal
-0.5
146
Normal
-0.5
228
Normal
-0.5
1026
Normal
-0.5
376
Normal
-0.5
635
Tumor
-0.5
742
Normal
-0.5
1042
Normal
-0.5
744
Normal
-0.5
536
Normal
-0.5
817
Tumor
-0.5
132
Normal
-0.6
975
Tumor
-0.6
1028
Normal
-0.6
1041
Tumor
-0.6
976
Normal
-0.6
445
Tumor
-0.6
857
Tumor
-0.6
138
Normal
-0.6
546
Normal
-0.6
852
Normal
-0.6
142
Normal
-0.6
482
Normal
-0.6
284
Normal
-0.6
136
Normal
-0.6
353
Tumor
-0.6
433
Tumor
-0.6
981
Tumor
-0.6
958
Normal
-0.6
916
Normal
-0.7
554
Normal
-0.7
434
Normal
-0.7
427
Tumor
-0.8
131
Tumor
-0.8
528
Normal
-0.8
858
Normal
-0.8
258
Normal
-0.8
328
Normal
-0.8
272
Normal
-0.8
867
Tumor
-0.8
435
Tumor
-0.8
818
Normal
-0.8
474
Normal
-0.9
1045
Tumor
-0.9
964
Normal
-0.9
697
Tumor
-0.9
232
Normal
-0.9
982
Normal
-0.9
462
Normal
-0.9
1014
Normal
-0.9
553
Tumor
-0.9
472
Normal
-0.9
966
Normal
-0.9
481
Tumor
-0.9
352
Normal
-0.9
951
Tumor
-0.9
416
Normal
-1.0
473
Tumor
-1.0
354
Normal
-1.0
262
Normal
-1.0
977
Tumor
-1.0
364
Normal
-1.0
956
Normal
-1.0
815
Tumor
-1.1
874
Normal
-1.1
978
Normal
-1.1
984
Normal
-1.1
865
Tumor
-1.1
615
Tumor
-1.1
824
Normal
-1.1
938
Normal
-1.2
954
Normal
-1.2
261
Tumor
-1.2
412
Normal
-1.3
863
Tumor
-1.3
915
Tumor
-1.3
861
Tumor
-1.3
1044
Normal
-1.3
356
Normal
-1.3
955
Tumor
-1.4
271
Tumor
-1.4
1046
Normal
-1.4
952
Normal
-1.4
924
Normal
-1.4
1016
Normal
-1.4
344
Normal
-1.5
926
Normal
-1.5
616
Normal
-1.5
641
Tumor
-1.5
918
Normal
-1.6
358
Normal
-1.6
448
Normal
-1.6
944
Normal
-1.6
868
Normal
-1.6
866
Normal
-1.6
642
Normal
-1.7
636
Normal
-1.7
618
Normal
-1.7
342
Normal
-1.7
862
Normal
-1.8
698
Normal
-1.8
628
Normal
-1.9
922
Normal
-2.0
864
Normal
-2.4
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
277
Tumor
N/A
278
Normal
N/A
713
Tumor
N/A
714
Normal
N/A
715
Tumor
N/A
716
Normal
N/A
721
Tumor
N/A
722
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
745
Tumor
N/A
746
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
755
Tumor
N/A
756
Normal
N/A
877
Tumor
N/A
878
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
883
Tumor
N/A
884
Normal
N/A
777
Tumor
N/A
778
Normal
N/A
785
Tumor
N/A
786
Normal
N/A
311
Tumor
N/A
312
Normal
N/A
313
Tumor
N/A
314
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
564
Normal
N/A
685
Tumor
N/A
686
Normal
N/A
567
Tumor
N/A
568
Normal
N/A
571
Tumor
N/A
451
Tumor
N/A
572
Normal
N/A
331
Tumor
N/A
452
Normal
N/A
573
Tumor
N/A
332
Normal
N/A
574
Normal
N/A
695
Tumor
N/A
696
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
221
Tumor
N/A
463
Tumor
N/A
222
Normal
N/A
464
Normal
N/A
465
Tumor
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
