HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:53.4 nTPM
HPA Brain:71.0 nTPM
GTEx:53.4 nTPM
FANTOM5:48.7 Scaled Tags Per Million
Pig:49.1 nTPM
Mouse:101.4 nTPM
Allen mouse:25.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA020559Antibody CAB026297
Glial cells HighLow
Neuronal cells HighHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 71.0
Sample id Sample description nTPM
Hippocampus
nTPM: 71.0
2529 Female, age 94, left hemisphere 80.5
1898 Male, age 80, left hemisphere 72.4
2621 Female, age 67, right hemisphere 68.6
1911 Female, age 85, right hemisphere 68.4
1855 Male, age 76, left hemisphere 68.1
2148 Female, age 91, left hemisphere 67.8
Dentate gyrus
nTPM: 66.8
2530 Female, age 94, left hemisphere 84.5
2010 Male, age 76, both hemispheres 69.7
2246 Female, age 85, both hemispheres 68.6
2531 Female, age 67, both hemispheres 62.7
2528 Male, age 74, both hemispheres 60.2
1927 Female, age 91, both hemispheres 55.2
Entorhinal gyrus
nTPM: 61.8
2117 Female, age 91, right hemisphere 73.0
1938 Female, age 85, left hemisphere 67.4
2686 Male, age 75, right hemisphere 62.7
1787 Male, age 76, left hemisphere 60.1
2764 Male, age 80, right hemisphere 54.4
2613 Female, age 94, left hemisphere 53.0
Hippocampus, CA1
nTPM: 66.6
2527 Male, age 74, both hemispheres 73.7
2749 Male, age 80, left hemisphere 70.7
1873 Female, age 85, both hemispheres 69.0
2045 Male, age 76, both hemispheres 61.2
2082 Female, age 91, right hemisphere 58.6
Hippocampus, CA2
nTPM: 64.5
1940 Female, age 85, left hemisphere 70.4
1892 Male, age 76, both hemispheres 68.0
2249 Male, age 74, both hemispheres 67.5
2437 Female, age 94, left hemisphere 63.5
2113 Female, age 91, right hemisphere 60.9
1963 Male, age 80, left hemisphere 56.8
Hippocampus, CA3
nTPM: 61.9
1891 Female, age 85, both hemispheres 68.8
2137 Male, age 80, left hemisphere 66.0
1867 Male, age 76, both hemispheres 65.6
2436 Male, age 74, both hemispheres 63.6
2861 Female, age 67, both hemispheres 55.3
2620 Female, age 94, left hemisphere 52.4
Parahippocampal cortex
nTPM: 61.7
2245 Female, age 91, both hemispheres 76.0
2532 Female, age 72, left hemisphere 67.2
2250 Female, age 67, right hemisphere 66.1
1850 Male, age 80, both hemispheres 62.5
2018 Male, age 76, both hemispheres 61.1
1933 Female, age 85, both hemispheres 60.6
2692 Male, age 74, both hemispheres 60.4
2622 Female, age 67, right hemisphere 57.8
1990 Female, age 91, right hemisphere 57.7
2693 Female, age 94, both hemispheres 47.9
Perirhinal gyrus
nTPM: 57.9
1841 Female, age 85, right hemisphere 62.3
1794 Male, age 80, right hemisphere 58.6
2848 Male, age 76, right hemisphere 57.0
2521 Female, age 94, right hemisphere 56.8
1847 Female, age 91, left hemisphere 54.7
Subiculum
nTPM: 65.1
1901 Male, age 80, both hemispheres 71.4
2042 Male, age 76, both hemispheres 68.7
2438 Female, age 94, left hemisphere 68.6
1977 Female, age 85, both hemispheres 63.8
2619 Male, age 74, both hemispheres 60.2
2729 Female, age 91, right hemisphere 57.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 53.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 53.4
Samples: 197

Max nTPM: 101.0
Min nTPM: 34.5
Std nTPM: 10.1
Median nTPM: 51.7
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 101.0
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 82.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 80.3
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 78.6
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 78.5
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 78.1
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 77.3
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 75.9
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 75.0
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 74.5
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 74.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 48.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 48.7
FF:10153-102I9 76 years, female 58.0
FF:10169-103B7 60 years, female 39.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 49.1
Pig sample Sample description nTPM
Subiculum
nTPM: 46.6
Samples: 4

Max nTPM: 55.1
Min nTPM: 42.5
Sample A Female 55.1
Sample B Female 44.3
Sample C Male 42.5
Sample D Male 44.5
Dorsal hippocampus
nTPM: 49.1
Samples: 4

Max nTPM: 52.1
Min nTPM: 45.7
Sample A Female 52.0
Sample B Female 46.6
Sample C Male 52.1
Sample D Male 45.7
Entorhinal cortex
nTPM: 45.7
Samples: 4

Max nTPM: 50.2
Min nTPM: 42.1
Sample A Female 43.8
Sample B Female 50.2
Sample C Male 46.6
Sample D Male 42.1
Ventral hippocampus
nTPM: 42.4
Samples: 4

Max nTPM: 45.8
Min nTPM: 39.4
Sample A Female 44.0
Sample B Female 39.4
Sample C Male 40.5
Sample D Male 45.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 101.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 97.2
Samples: 4

Max nTPM: 108.1
Min nTPM: 89.1
Sample A Male 97.9
Sample B Male 108.1
Sample C Female 89.1
Sample D Female 93.5
Hippocampal formation
nTPM: 101.4
Samples: 4

Max nTPM: 113.1
Min nTPM: 94.0
Sample A Male 98.4
Sample B Male 113.1
Sample C Female 100.1
Sample D Female 94.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 25.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 25.7
532664 Antisense, RP_040825_01_B10, Mouse strain C57BL/6J (56 days, male) 25.7

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