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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
WDTC1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
27.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
25.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
25.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
24.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
23.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
23.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
23.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
21.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
21.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
20.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
20.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
20.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
19.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
19.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
19.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
19.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
18.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
18.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
17.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
17.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
17.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
16.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
16.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
16.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
16.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
16.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
16.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
16.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
16.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
16.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
16.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
15.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
15.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
15.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
15.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
15.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
15.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
15.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
15.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
15.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
15.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
14.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
14.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
14.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
14.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
14.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
14.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
14.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
14.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
14.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
14.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
14.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
14.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
14.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
13.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
13.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
13.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
13.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
13.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
13.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
13.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
13.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
13.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
13.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
13.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
13.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
13.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
13.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
12.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
12.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
12.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
12.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
12.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
12.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
12.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
12.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
12.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
12.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
12.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
12.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
12.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
11.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
11.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
11.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
11.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
11.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
11.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
11.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
11.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
11.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
11.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
11.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
11.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
11.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
11.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
11.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
11.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
11.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
11.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
10.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
10.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
10.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
10.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
10.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
10.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
10.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
10.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
10.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
10.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
10.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
10.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
9.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
9.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
9.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
9.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
9.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
9.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
9.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
9.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
9.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
9.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
9.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
9.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
9.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
8.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
8.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
7.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
7.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
7.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
7.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
WDTC1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.6
Number of samples
231
Samples
Sample
Description
TPM
DO45275
0 years, male, NA, stage:3, dead, 10 days
23.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
20.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
20.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
18.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
17.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
17.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
15.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
14.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
13.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
13.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
13.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
13.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
13.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
12.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
12.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
12.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
11.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
11.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
11.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
11.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
11.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
11.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
10.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
10.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
10.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
9.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
9.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
9.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
8.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
8.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
8.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
8.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
8.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
8.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
8.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
8.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
7.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
7.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
7.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
7.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
7.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
7.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
7.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
6.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
6.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
6.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
6.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
6.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
5.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
5.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
5.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
5.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
5.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
5.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
5.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
5.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
5.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
5.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
5.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
4.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
4.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
4.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
4.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
4.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
4.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
4.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
4.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
3.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
3.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
3.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
3.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
3.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
2.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
2.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
283
Tumor
0.6
314
Normal
0.6
491
Tumor
0.5
172
Normal
0.5
925
Tumor
0.5
148
Normal
0.5
112
Tumor
0.5
162
Normal
0.5
513
Tumor
0.5
228
Normal
0.5
1027
Tumor
0.4
384
Normal
0.4
648
Normal
0.4
553
Tumor
0.4
186
Normal
0.4
912
Normal
0.4
342
Normal
0.4
1021
Tumor
0.4
188
Normal
0.4
327
Tumor
0.4
375
Tumor
0.3
313
Tumor
0.3
257
Tumor
0.3
431
Tumor
0.3
341
Tumor
0.3
1041
Tumor
0.3
483
Tumor
0.3
368
Normal
0.3
741
Tumor
0.3
514
Normal
0.3
618
Normal
0.3
863
Tumor
0.3
882
Normal
0.3
1031
Tumor
0.3
365
Tumor
0.3
492
Normal
0.3
616
Normal
0.3
196
Normal
0.3
951
Tumor
0.3
221
Tumor
0.3
128
Normal
0.3
915
Tumor
0.3
642
Normal
0.3
366
Normal
0.3
666
Normal
0.3
672
Normal
0.3
636
Normal
0.3
662
Normal
0.3
353
Tumor
0.3
813
Tumor
0.3
212
Normal
0.3
376
Normal
0.3
627
Tumor
0.3
222
Normal
0.3
918
Normal
0.3
518
Normal
0.3
428
Normal
0.2
494
Normal
0.2
554
Normal
0.2
664
Normal
0.2
685
Tumor
0.2
746
Normal
0.2
628
Normal
0.2
981
Tumor
0.2
1022
Normal
0.2
617
Tumor
0.2
261
Tumor
0.2
147
Tumor
0.2
1025
Tumor
0.2
861
Tumor
0.2
361
Tumor
0.2
443
Tumor
0.2
956
Normal
0.2
728
Normal
0.2
484
Normal
0.2
488
Normal
0.2
745
Tumor
0.2
425
Tumor
0.2
955
Tumor
0.2
423
Tumor
0.2
1016
Normal
0.2
218
Normal
0.2
416
Normal
0.2
224
Normal
0.2
714
Normal
0.2
926
Normal
0.2
284
Normal
0.2
433
Tumor
0.2
434
Normal
0.2
362
Normal
0.2
125
Tumor
0.2
426
Normal
0.2
737
Tumor
0.2
615
Tumor
0.2
924
Normal
0.2
286
Normal
0.2
916
Normal
0.2
777
Tumor
0.2
1015
Tumor
0.2
917
Tumor
0.1
161
Tumor
0.1
421
Tumor
0.1
412
Normal
0.1
738
Normal
0.1
436
Normal
0.1
424
Normal
0.1
497
Tumor
0.1
524
Normal
0.1
422
Normal
0.1
516
Normal
0.1
214
Normal
0.1
1026
Normal
0.1
686
Normal
0.1
124
Normal
0.1
663
Tumor
0.1
867
Tumor
0.1
217
Tumor
0.1
515
Tumor
0.1
195
Tumor
0.1
446
Normal
0.1
526
Normal
0.1
192
Normal
0.1
852
Normal
0.1
185
Tumor
0.1
191
Tumor
0.1
113
Tumor
0.1
923
Tumor
0.1
816
Normal
0.1
884
Normal
0.1
755
Tumor
0.1
1028
Normal
0.1
1045
Tumor
0.1
213
Tumor
0.1
722
Normal
0.1
698
Normal
0.1
456
Normal
0.1
493
Tumor
0.1
114
Normal
0.1
111
Normal
0.1
778
Normal
0.1
356
Normal
0.1
414
Normal
0.1
427
Tumor
0.1
953
Tumor
0.1
922
Normal
0.1
696
Normal
0.1
862
Normal
0.1
744
Normal
0.1
858
Normal
0.1
785
Tumor
0.1
432
Normal
0.1
874
Normal
0.1
367
Tumor
0.1
1032
Normal
0.1
868
Normal
0.1
466
Normal
0.1
527
Tumor
0.1
982
Normal
0.0
444
Normal
0.0
474
Normal
0.0
387
Tumor
0.0
635
Tumor
0.0
823
Tumor
0.0
814
Normal
0.0
223
Tumor
0.0
1046
Normal
0.0
452
Normal
0.0
383
Tumor
0.0
881
Tumor
0.0
465
Tumor
0.0
952
Normal
0.0
126
Normal
0.0
756
Normal
0.0
944
Normal
0.0
914
Normal
0.0
716
Normal
0.0
538
Normal
0.0
272
Normal
0.0
468
Normal
0.0
938
Normal
0.0
723
Tumor
0.0
358
Normal
0.0
1013
Tumor
0.0
232
Normal
0.0
977
Tumor
0.0
487
Tumor
0.0
187
Tumor
0.0
171
Tumor
0.0
355
Tumor
0.0
142
Normal
0.0
641
Tumor
0.0
498
Normal
0.0
966
Normal
0.0
883
Tumor
0.0
415
Tumor
0.0
311
Tumor
0.0
464
Normal
0.0
864
Normal
0.0
132
Normal
0.0
921
Tumor
0.0
1042
Normal
0.0
975
Tumor
-0.1
878
Normal
-0.1
364
Normal
-0.1
695
Tumor
-0.1
481
Tumor
-0.1
546
Normal
-0.1
472
Normal
-0.1
536
Normal
-0.1
227
Tumor
-0.1
455
Tumor
-0.1
298
Normal
-0.1
661
Tumor
-0.1
824
Normal
-0.1
344
Normal
-0.1
231
Tumor
-0.1
742
Normal
-0.1
857
Tumor
-0.1
328
Normal
-0.1
267
Tumor
-0.1
462
Normal
-0.1
943
Tumor
-0.1
477
Tumor
-0.1
262
Normal
-0.1
271
Tumor
-0.1
123
Tumor
-0.1
1043
Tumor
-0.1
357
Tumor
-0.1
435
Tumor
-0.1
533
Tumor
-0.1
352
Normal
-0.1
463
Tumor
-0.1
331
Tumor
-0.1
445
Tumor
-0.1
268
Normal
-0.1
1044
Normal
-0.1
786
Normal
-0.1
968
Normal
-0.1
351
Tumor
-0.1
478
Normal
-0.1
967
Tumor
-0.1
448
Normal
-0.1
913
Tumor
-0.1
277
Tumor
-0.1
697
Tumor
-0.1
958
Normal
-0.1
743
Tumor
-0.2
136
Normal
-0.2
877
Tumor
-0.2
954
Normal
-0.2
963
Tumor
-0.2
851
Tumor
-0.2
258
Normal
-0.2
818
Normal
-0.2
866
Normal
-0.2
297
Tumor
-0.2
983
Tumor
-0.2
137
Tumor
-0.2
534
Normal
-0.2
127
Tumor
-0.2
517
Tumor
-0.2
411
Tumor
-0.2
1014
Normal
-0.2
976
Normal
-0.2
665
Tumor
-0.2
141
Tumor
-0.2
523
Tumor
-0.2
285
Tumor
-0.2
211
Tumor
-0.2
647
Tumor
-0.2
865
Tumor
-0.2
525
Tumor
-0.2
461
Tumor
-0.2
482
Normal
-0.2
964
Normal
-0.2
873
Tumor
-0.2
724
Normal
-0.2
471
Tumor
-0.2
727
Tumor
-0.2
312
Normal
-0.2
721
Tumor
-0.3
671
Tumor
-0.3
146
Normal
-0.3
447
Tumor
-0.3
386
Normal
-0.3
354
Normal
-0.3
343
Tumor
-0.3
363
Tumor
-0.3
528
Normal
-0.3
451
Tumor
-0.3
393
Tumor
-0.3
984
Normal
-0.3
937
Tumor
-0.3
567
Tumor
-0.3
138
Normal
-0.3
392
Normal
-0.3
145
Tumor
-0.3
545
Tumor
-0.3
413
Tumor
-0.4
135
Tumor
-0.4
715
Tumor
-0.4
815
Tumor
-0.4
473
Tumor
-0.4
388
Normal
-0.4
467
Tumor
-0.4
394
Normal
-0.4
978
Normal
-0.4
535
Tumor
-0.5
713
Tumor
-0.5
911
Tumor
-0.5
557
Tumor
-0.5
817
Tumor
-0.5
965
Tumor
-0.5
396
Normal
-0.5
395
Tumor
-0.5
332
Normal
-0.5
573
Tumor
-0.6
537
Tumor
-0.6
131
Tumor
-0.6
957
Tumor
-0.6
385
Tumor
-0.7
574
Normal
-0.7
278
Normal
-0.7
568
Normal
-0.8
391
Tumor
-0.8
558
Normal
-1.0
572
Normal
-1.0
563
Tumor
-1.1
564
Normal
-1.1
571
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
