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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FCN3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
375.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
169.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
157.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
154.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
145.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
127.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
107.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
106.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
97.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
81.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
75.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
61.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
60.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
59.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
56.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
55.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
54.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
51.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
49.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
47.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
45.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
44.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
42.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
42.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
41.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
37.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
36.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
34.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
32.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
31.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
28.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
27.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
27.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
27.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
26.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
26.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
24.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
23.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
23.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
22.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
19.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
18.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
17.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
17.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
14.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
14.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
13.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
13.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
13.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
12.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
12.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
11.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
10.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
10.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
10.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
10.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
9.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
9.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
7.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
7.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
6.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
5.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
4.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
4.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
4.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
3.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
3.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
3.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
3.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
3.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
3.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
3.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
3.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
2.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
2.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
2.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
2.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
2.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
2.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
2.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
2.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
2.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
2.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
2.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
2.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
2.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
2.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
2.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
2.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
2.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
2.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
2.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
2.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
2.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
2.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
1.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
1.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
1.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
1.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
1.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
1.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
1.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
1.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
1.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
1.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
1.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
1.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
1.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
1.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
1.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
1.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
1.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
1.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
1.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
1.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
1.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
1.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
1.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
1.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
1.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
1.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
1.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
1.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
1.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
1.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
1.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
1.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
1.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
1.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
1.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
1.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
1.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
1.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
1.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
1.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
1.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
1.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
1.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FCN3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.0
Number of samples
231
Samples
Sample
Description
TPM
DO23551
0 years, male, NA, stage:3, dead, 150 days
266.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
225.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
164.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
150.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
138.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
114.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
101.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
82.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
78.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
77.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
68.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
64.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
60.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
60.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
57.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
56.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
52.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
51.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
49.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
48.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
45.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
44.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
43.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
41.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
38.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
38.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
34.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
33.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
30.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
28.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
28.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
28.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
27.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
26.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
25.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
24.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
24.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
23.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
21.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
21.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
21.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
21.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
20.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
19.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
18.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
17.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
16.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
16.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
14.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
14.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
11.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
10.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
9.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
8.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
6.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
6.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
5.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
4.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
4.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
4.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
4.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
3.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
3.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
3.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
3.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
3.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
3.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
3.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
3.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
3.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
3.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
3.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
3.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
3.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
3.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
3.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
3.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
3.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
2.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
2.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
2.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
2.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
2.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
2.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
2.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
2.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
2.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
2.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
2.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
2.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
2.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
2.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
2.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
2.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
1.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
1.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
1.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
1.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
1.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
1.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
1.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
1.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
1.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
1.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
1.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
1.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
1.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
1.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
1.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
1.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
1.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
1.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
1.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
1.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
1.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
1.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
1.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
1.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
1.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
1.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
1.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
1.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
1.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
1.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
1.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
1.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
1.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
1.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
1.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
1.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
1.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
1.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
1.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
1.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
1.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
1.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
1.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
0.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
0.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
0.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
0.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
0.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
0.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
686
Normal
1.4
344
Normal
1.3
224
Normal
1.2
514
Normal
1.2
696
Normal
1.2
368
Normal
1.2
716
Normal
1.2
1046
Normal
1.1
376
Normal
1.1
332
Normal
1.1
536
Normal
1.1
218
Normal
1.0
526
Normal
1.0
314
Normal
1.0
648
Normal
1.0
866
Normal
1.0
568
Normal
1.0
954
Normal
1.0
984
Normal
1.0
938
Normal
1.0
636
Normal
1.0
558
Normal
1.0
396
Normal
1.0
232
Normal
0.9
262
Normal
0.9
868
Normal
0.9
258
Normal
0.9
944
Normal
0.9
516
Normal
0.9
966
Normal
0.9
362
Normal
0.9
618
Normal
0.9
186
Normal
0.9
384
Normal
0.9
212
Normal
0.9
746
Normal
0.9
414
Normal
0.9
1042
Normal
0.9
1028
Normal
0.9
1044
Normal
0.9
188
Normal
0.9
286
Normal
0.9
964
Normal
0.9
955
Tumor
0.9
958
Normal
0.9
728
Normal
0.9
956
Normal
0.9
572
Normal
0.9
884
Normal
0.9
328
Normal
0.8
426
Normal
0.8
1022
Normal
0.8
124
Normal
0.8
662
Normal
0.8
786
Normal
0.8
968
Normal
0.8
574
Normal
0.8
422
Normal
0.8
785
Tumor
0.8
494
Normal
0.8
664
Normal
0.8
142
Normal
0.8
862
Normal
0.8
914
Normal
0.8
464
Normal
0.7
982
Normal
0.7
1026
Normal
0.7
466
Normal
0.7
518
Normal
0.7
554
Normal
0.7
538
Normal
0.7
356
Normal
0.7
432
Normal
0.7
343
Tumor
0.7
1045
Tumor
0.7
498
Normal
0.7
528
Normal
0.7
228
Normal
0.7
484
Normal
0.7
352
Normal
0.7
284
Normal
0.7
446
Normal
0.7
713
Tumor
0.7
1032
Normal
0.7
358
Normal
0.7
162
Normal
0.7
136
Normal
0.7
742
Normal
0.7
394
Normal
0.7
261
Tumor
0.6
416
Normal
0.6
722
Normal
0.6
392
Normal
0.6
524
Normal
0.6
628
Normal
0.6
723
Tumor
0.6
756
Normal
0.6
666
Normal
0.6
468
Normal
0.6
436
Normal
0.6
976
Normal
0.6
434
Normal
0.6
428
Normal
0.6
778
Normal
0.6
564
Normal
0.6
128
Normal
0.6
874
Normal
0.6
1016
Normal
0.6
388
Normal
0.6
926
Normal
0.6
412
Normal
0.6
858
Normal
0.6
714
Normal
0.5
738
Normal
0.5
148
Normal
0.5
818
Normal
0.5
922
Normal
0.5
672
Normal
0.5
912
Normal
0.5
172
Normal
0.5
424
Normal
0.5
698
Normal
0.5
268
Normal
0.5
642
Normal
0.5
222
Normal
0.5
616
Normal
0.5
366
Normal
0.5
452
Normal
0.5
978
Normal
0.5
114
Normal
0.5
354
Normal
0.5
444
Normal
0.5
278
Normal
0.5
364
Normal
0.5
697
Tumor
0.5
534
Normal
0.5
196
Normal
0.4
192
Normal
0.4
217
Tumor
0.4
952
Normal
0.4
491
Tumor
0.4
1014
Normal
0.4
132
Normal
0.4
272
Normal
0.4
864
Normal
0.4
546
Normal
0.4
852
Normal
0.4
617
Tumor
0.4
882
Normal
0.4
138
Normal
0.4
415
Tumor
0.3
814
Normal
0.3
474
Normal
0.3
456
Normal
0.3
924
Normal
0.3
916
Normal
0.3
816
Normal
0.3
918
Normal
0.3
386
Normal
0.3
492
Normal
0.3
824
Normal
0.3
488
Normal
0.3
111
Normal
0.3
448
Normal
0.3
214
Normal
0.2
312
Normal
0.2
943
Tumor
0.2
721
Tumor
0.2
472
Normal
0.2
146
Normal
0.2
553
Tumor
0.1
873
Tumor
0.1
877
Tumor
0.1
571
Tumor
0.1
342
Normal
0.1
857
Tumor
0.1
615
Tumor
0.1
298
Normal
0.1
867
Tumor
0.1
744
Normal
0.0
878
Normal
0.0
967
Tumor
0.0
627
Tumor
0.0
327
Tumor
0.0
963
Tumor
-0.1
917
Tumor
-0.1
813
Tumor
-0.1
351
Tumor
-0.1
283
Tumor
-0.2
671
Tumor
-0.2
391
Tumor
-0.2
567
Tumor
-0.2
361
Tumor
-0.2
126
Normal
-0.2
965
Tumor
-0.2
462
Normal
-0.2
573
Tumor
-0.2
563
Tumor
-0.2
195
Tumor
-0.2
447
Tumor
-0.2
478
Normal
-0.2
375
Tumor
-0.2
223
Tumor
-0.3
975
Tumor
-0.3
367
Tumor
-0.3
187
Tumor
-0.3
535
Tumor
-0.3
145
Tumor
-0.3
271
Tumor
-0.3
185
Tumor
-0.3
513
Tumor
-0.3
127
Tumor
-0.3
365
Tumor
-0.4
515
Tumor
-0.4
953
Tumor
-0.4
383
Tumor
-0.4
413
Tumor
-0.4
557
Tumor
-0.4
421
Tumor
-0.5
915
Tumor
-0.5
353
Tumor
-0.5
395
Tumor
-0.5
881
Tumor
-0.5
423
Tumor
-0.5
817
Tumor
-0.5
925
Tumor
-0.5
685
Tumor
-0.5
433
Tumor
-0.5
141
Tumor
-0.5
482
Normal
-0.5
425
Tumor
-0.6
663
Tumor
-0.6
477
Tumor
-0.6
221
Tumor
-0.6
481
Tumor
-0.6
267
Tumor
-0.6
465
Tumor
-0.6
137
Tumor
-0.6
983
Tumor
-0.6
493
Tumor
-0.6
467
Tumor
-0.7
1041
Tumor
-0.7
393
Tumor
-0.7
461
Tumor
-0.7
341
Tumor
-0.7
525
Tumor
-0.7
981
Tumor
-0.7
863
Tumor
-0.7
257
Tumor
-0.7
647
Tumor
-0.7
497
Tumor
-0.7
823
Tumor
-0.7
135
Tumor
-0.8
471
Tumor
-0.8
861
Tumor
-0.8
851
Tumor
-0.8
695
Tumor
-0.8
865
Tumor
-0.8
355
Tumor
-0.8
357
Tumor
-0.8
1043
Tumor
-0.8
635
Tumor
-0.8
463
Tumor
-0.8
727
Tumor
-0.8
883
Tumor
-0.8
665
Tumor
-0.8
1025
Tumor
-0.8
641
Tumor
-0.8
741
Tumor
-0.9
231
Tumor
-0.9
191
Tumor
-0.9
331
Tumor
-0.9
213
Tumor
-0.9
483
Tumor
-0.9
517
Tumor
-0.9
777
Tumor
-0.9
737
Tumor
-0.9
921
Tumor
-0.9
913
Tumor
-0.9
527
Tumor
-0.9
431
Tumor
-0.9
161
Tumor
-1.0
112
Tumor
-1.0
815
Tumor
-1.0
125
Tumor
-1.0
537
Tumor
-1.0
427
Tumor
-1.0
545
Tumor
-1.0
123
Tumor
-1.0
724
Normal
-1.0
937
Tumor
-1.1
745
Tumor
-1.1
661
Tumor
-1.1
451
Tumor
-1.1
923
Tumor
-1.1
911
Tumor
-1.1
297
Tumor
-1.1
113
Tumor
-1.1
455
Tumor
-1.1
387
Tumor
-1.1
285
Tumor
-1.1
523
Tumor
-1.1
1027
Tumor
-1.1
385
Tumor
-1.1
211
Tumor
-1.1
227
Tumor
-1.1
957
Tumor
-1.2
435
Tumor
-1.2
951
Tumor
-1.2
755
Tumor
-1.2
131
Tumor
-1.2
977
Tumor
-1.3
363
Tumor
-1.3
487
Tumor
-1.3
311
Tumor
-1.3
171
Tumor
-1.3
411
Tumor
-1.3
1013
Tumor
-1.3
1031
Tumor
-1.3
715
Tumor
-1.3
1015
Tumor
-1.3
277
Tumor
-1.3
743
Tumor
-1.4
147
Tumor
-1.5
445
Tumor
-1.5
1021
Tumor
-1.5
443
Tumor
-1.5
533
Tumor
-1.6
313
Tumor
-1.6
473
Tumor
-2.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
