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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
9.1
nTPM
HPA Brain:
12.5
nTPM
GTEx:
9.1
nTPM
FANTOM5:
8.3
Scaled Tags Per Million
Pig:
10.9
nTPM
Mouse:
0.3
nTPM
Allen mouse:
0.1
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
12.5
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 9.5
2586
Male, age 75, left hemisphere
15.4
2828
Female, age 72, unknown
14.0
2666
Male, age 74, left hemisphere
10.3
2019
Male, age 18, unknown
9.8
1870
Female, age 42, unknown
8.8
1833
Male, age 53, unknown
8.6
1830
Male, age 51, unknown
8.5
2411
Female, age 72, unknown
8.0
1827
Male, age 72, unknown
6.3
2219
Male, age 76, both hemispheres
5.3
Dorsal raphe nucleus nTPM: 12.5
2298
Female, age 72, unknown
17.7
1828
Male, age 53, unknown
13.0
2016
Female, age 72, unknown
12.6
2047
Male, age 72, unknown
9.9
2750
Male, age 76, both hemispheres
9.0
Inferior colliculus nTPM: 9.1
1890
Male, age 53, unknown
11.2
2097
Female, age 72, unknown
11.1
1848
Female, age 42, unknown
7.2
2849
Male, age 72, unknown
7.1
Median raphe nucleus nTPM: 9.2
2220
Male, age 76, midline
9.2
Periaquaductal grey, anterior nTPM: 10.8
1795
Male, age 51, unknown
12.2
2502
Female, age 75, unknown
10.3
1947
Male, age 18, unknown
9.8
Periaquaductal grey, dorsal nTPM: 9.6
2850
Male, age 76, both hemispheres
11.6
1831
Male, age 72, unknown
10.1
1840
Male, age 53, unknown
8.6
2464
Female, age 72, unknown
8.0
Periaquaductal grey, lateral nTPM: 11.0
2140
Male, age 76, both hemispheres
11.9
2272
Male, age 74, both hemispheres
11.3
2053
Male, age 18, unknown
9.8
Pretectal area nTPM: 8.2
2224
Female, age 72, unknown
11.4
2273
Male, age 74, both hemispheres
9.9
1817
Female, age 42, unknown
9.4
2007
Male, age 72, unknown
9.1
1944
Female, age 72, unknown
7.8
2316
Male, age 76, right hemisphere
7.8
2407
Male, age 75, both hemispheres
7.8
2825
Male, age 18, unknown
7.7
2667
Female, age 75, unknown
7.0
1816
Male, age 51, unknown
6.3
1815
Male, age 53, unknown
6.1
Red nucleus nTPM: 10.5
2227
Male, age 72, unknown
13.7
2769
Male, age 72, unknown
12.8
1954
Female, age 42, unknown
11.8
2584
Male, age 75, left hemisphere
11.7
2503
Female, age 72, unknown
10.7
2588
Male, age 74, left hemisphere
10.5
1821
Female, age 72, unknown
10.4
2785
Male, age 18, unknown
10.4
1904
Male, age 53, unknown
10.3
2725
Female, age 75, unknown
8.6
1865
Male, age 51, unknown
8.1
2823
Male, age 76, right hemisphere
7.2
Substantia nigra nTPM: 7.9
2665
Male, age 74, both hemispheres
10.2
2583
Male, age 75, right hemisphere
9.7
1916
Female, age 42, unknown
8.9
1851
Male, age 51, unknown
8.6
2699
Male, age 18, unknown
8.2
2590
Female, age 75, unknown
7.8
1889
Female, age 72, unknown
7.6
2241
Male, age 72, unknown
7.1
1941
Male, age 53, unknown
6.7
2409
Female, age 72, unknown
3.9
Superior colliculus nTPM: 8.8
2668
Female, age 75, unknown
12.0
2664
Male, age 75, both hemispheres
11.1
1995
Male, age 72, unknown
10.1
2587
Male, age 74, left hemisphere
9.5
2261
Male, age 18, unknown
9.3
1796
Male, age 53, unknown
8.7
1839
Male, age 51, unknown
8.1
2087
Female, age 72, unknown
7.8
1913
Female, age 42, unknown
7.3
1895
Male, age 76, right hemisphere
3.3
Ventral tegmental area nTPM: 10.2
1942
Male, age 51, unknown
14.2
2021
Male, age 53, unknown
12.6
2223
Female, age 72, unknown
9.6
1915
Female, age 42, unknown
8.6
2218
Male, age 76, both hemispheres
8.4
2410
Female, age 72, unknown
8.0
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
9.1
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 9.1
Samples: 139
Max nTPM: 27.7
Min nTPM: 2.5
Std nTPM: 4.1
Median nTPM: 8.6
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
27.7
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
21.0
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
20.9
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
18.2
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
17.8
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
17.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
17.4
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
16.0
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
16.0
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
15.6
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
15.3
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
15.3
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
14.6
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
14.5
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
14.3
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
14.3
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
13.4
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
13.4
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
13.3
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
13.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
13.2
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
12.9
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
12.7
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
12.6
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
12.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
12.3
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
12.1
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
12.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
12.1
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
11.9
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
11.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
11.8
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
11.6
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
11.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
11.5
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
11.4
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
11.2
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
11.2
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
11.0
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
10.9
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
10.8
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
10.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
10.8
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
10.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
10.6
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
10.4
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
10.3
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
10.2
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
10.1
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
10.0
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
9.8
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
9.8
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
9.8
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
9.8
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
9.6
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
9.5
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
9.4
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
9.3
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
9.2
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
9.2
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
9.2
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
9.0
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
9.0
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
8.9
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
8.9
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
8.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
8.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
8.8
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
8.7
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
8.6
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
8.5
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
8.4
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
8.3
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
8.3
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
8.3
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
8.3
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
8.2
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
8.0
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
8.0
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
7.9
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
7.9
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
7.8
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
7.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
7.5
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
7.5
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
7.4
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
7.3
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
7.2
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
7.2
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
7.2
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
7.1
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
6.9
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
6.9
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
6.7
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
6.6
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
6.6
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
6.6
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
6.5
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
6.5
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
6.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
6.4
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
6.3
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
6.1
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
6.1
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
6.0
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
5.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
5.8
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
5.8
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
5.6
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
5.6
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
5.5
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
5.3
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
5.3
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
5.3
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
5.3
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
5.2
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
5.1
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
5.0
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
5.0
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
4.9
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
4.8
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
4.8
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
4.7
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
4.6
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
4.6
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
4.6
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
4.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
4.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
4.4
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
3.5
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
3.4
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
3.4
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
3.4
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
3.0
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
3.0
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
2.8
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
2.8
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
2.8
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
2.5
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
0.3
Mouse sample
Sample description
nTPM
Midbrain nTPM: 0.3
Samples: 4
Max nTPM: 0.4
Min nTPM: 0.0
Sample A
Male
0.4
Sample B
Male
0.3
Sample C
Female
0.0
Sample D
Female
0.4
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.