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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ZNF593 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
52.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
332.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
190.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
167.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
152.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
137.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
130.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
130.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
129.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
123.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
113.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
112.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
111.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
109.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
106.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
105.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
104.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
103.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
102.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
101.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
100.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
98.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
95.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
95.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
95.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
93.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
93.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
92.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
92.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
91.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
91.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
86.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
86.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
84.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
83.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
83.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
83.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
83.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
82.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
82.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
82.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
81.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
81.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
81.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
80.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
80.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
80.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
80.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
79.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
79.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
78.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
77.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
77.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
77.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
77.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
77.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
76.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
76.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
76.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
76.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
75.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
75.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
75.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
74.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
73.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
72.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
72.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
71.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
71.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
71.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
70.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
70.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
69.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
69.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
69.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
69.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
69.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
68.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
68.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
67.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
67.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
67.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
67.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
66.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
66.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
66.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
66.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
66.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
65.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
65.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
65.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
65.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
65.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
64.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
63.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
63.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
63.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
62.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
62.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
62.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
62.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
62.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
62.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
61.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
61.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
61.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
61.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
61.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
61.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
61.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
61.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
61.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
61.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
60.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
60.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
60.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
60.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
60.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
59.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
59.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
58.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
58.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
58.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
58.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
57.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
57.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
57.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
56.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
56.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
56.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
56.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
56.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
56.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
55.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
54.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
54.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
54.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
54.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
53.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
53.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
53.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
53.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
52.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
52.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
52.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
51.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
51.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
51.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
51.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
51.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
51.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
51.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
51.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
51.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
50.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
50.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
50.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
50.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
50.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
50.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
50.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
49.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
49.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
49.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
49.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
49.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
49.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
49.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
48.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
48.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
48.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
48.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
48.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
48.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
48.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
48.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
47.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
47.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
47.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
47.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
47.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
47.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
47.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
46.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
46.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
46.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
46.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
46.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
45.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
45.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
45.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
45.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
44.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
44.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
44.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
44.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
44.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
44.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
44.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
44.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
43.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
43.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
43.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
43.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
43.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
43.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
43.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
43.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
42.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
42.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
42.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
42.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
42.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
41.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
41.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
41.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
41.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
41.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
41.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
41.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
41.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
40.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
40.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
40.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
39.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
39.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
39.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
39.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
39.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
39.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
39.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
38.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
38.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
38.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
38.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
38.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
37.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
37.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
37.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
37.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
37.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
37.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
36.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
36.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
36.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
36.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
36.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
36.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
36.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
35.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
35.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
35.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
35.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
35.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
35.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
35.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
35.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
34.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
34.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
34.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
33.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
33.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
33.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
33.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
33.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
33.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
33.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
33.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
33.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
32.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
32.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
32.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
32.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
32.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
32.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
32.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
32.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
31.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
31.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
31.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
31.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
31.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
31.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
31.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
30.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
30.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
30.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
30.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
30.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
29.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
29.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
29.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
29.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
28.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
28.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
28.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
28.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
28.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
27.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
27.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
27.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
27.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
27.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
26.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
26.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
26.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
26.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
26.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
26.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
26.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
26.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
26.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
26.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
25.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
25.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
25.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
25.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
25.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
25.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
24.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
24.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
24.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
24.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
24.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
24.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
23.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
23.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
22.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
22.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
22.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
22.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
22.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
21.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
21.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
21.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
21.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
21.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
20.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
20.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
20.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
20.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
19.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
19.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
19.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
19.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
19.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
19.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
19.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
18.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
17.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
17.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
17.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
17.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
16.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
15.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
11.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
10.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
9.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ZNF593 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.2
Number of samples
231
Samples
Sample
Description
TPM
DO50839
0 years, female, NA, stage:3, alive, 330 days
98.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
79.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
70.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
69.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
69.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
64.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
60.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
60.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
60.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
57.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
56.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
55.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
54.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
52.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
51.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
47.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
46.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
46.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
46.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
43.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
43.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
43.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
43.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
42.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
42.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
40.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
39.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
38.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
38.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
38.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
37.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
37.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
37.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
36.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
36.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
36.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
36.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
35.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
35.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
33.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
33.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
33.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
33.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
33.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
32.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
32.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
32.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
32.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
31.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
31.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
31.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
30.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
30.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
30.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
30.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
29.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
29.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
29.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
29.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
29.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
28.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
28.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
28.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
28.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
28.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
28.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
28.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
28.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
27.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
27.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
27.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
27.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
27.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
26.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
26.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
26.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
26.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
26.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
26.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
25.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
25.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
25.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
25.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
25.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
25.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
24.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
24.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
24.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
24.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
24.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
24.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
24.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
24.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
24.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
24.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
24.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
23.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
23.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
23.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
22.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
22.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
22.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
22.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
22.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
22.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
22.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
22.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
22.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
22.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
22.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
22.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
22.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
21.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
21.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
21.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
21.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
21.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
21.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
21.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
21.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
21.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
21.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
20.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
20.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
20.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
20.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
20.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
20.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
20.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
20.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
19.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
19.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
19.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
19.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
19.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
19.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
18.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
18.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
18.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
18.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
17.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
17.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
17.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
17.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
17.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
17.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
16.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
16.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
16.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
16.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
16.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
16.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
15.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
15.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
15.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
15.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
15.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
15.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
15.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
15.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
15.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
15.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
15.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
14.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
14.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
14.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
14.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
14.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
13.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
13.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
13.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
13.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
13.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
13.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
12.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
12.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
12.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
12.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
12.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
12.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
12.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
12.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
11.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
10.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
9.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
8.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
8.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
4.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
925
Tumor
1.6
353
Tumor
1.3
685
Tumor
1.2
211
Tumor
1.2
965
Tumor
1.0
267
Tumor
1.0
395
Tumor
0.9
917
Tumor
0.9
557
Tumor
0.9
755
Tumor
0.8
473
Tumor
0.7
976
Normal
0.7
331
Tumor
0.7
171
Tumor
0.6
533
Tumor
0.6
817
Tumor
0.6
311
Tumor
0.6
161
Tumor
0.6
958
Normal
0.6
571
Tumor
0.6
227
Tumor
0.6
537
Tumor
0.6
968
Normal
0.6
627
Tumor
0.5
284
Normal
0.5
865
Tumor
0.5
745
Tumor
0.5
487
Tumor
0.5
231
Tumor
0.5
228
Normal
0.5
937
Tumor
0.5
375
Tumor
0.5
964
Normal
0.5
427
Tumor
0.4
413
Tumor
0.4
641
Tumor
0.4
786
Normal
0.4
636
Normal
0.4
268
Normal
0.4
867
Tumor
0.4
823
Tumor
0.4
355
Tumor
0.4
477
Tumor
0.4
975
Tumor
0.4
367
Tumor
0.4
478
Normal
0.4
913
Tumor
0.4
883
Tumor
0.4
664
Normal
0.4
185
Tumor
0.3
963
Tumor
0.3
313
Tumor
0.3
364
Normal
0.3
498
Normal
0.3
416
Normal
0.3
484
Normal
0.3
285
Tumor
0.3
383
Tumor
0.3
628
Normal
0.3
277
Tumor
0.3
967
Tumor
0.3
387
Tumor
0.3
224
Normal
0.3
483
Tumor
0.3
327
Tumor
0.3
756
Normal
0.3
258
Normal
0.3
567
Tumor
0.3
616
Normal
0.2
513
Tumor
0.2
957
Tumor
0.2
911
Tumor
0.2
385
Tumor
0.2
861
Tumor
0.2
1027
Tumor
0.2
187
Tumor
0.2
618
Normal
0.2
451
Tumor
0.2
535
Tumor
0.2
488
Normal
0.2
494
Normal
0.2
257
Tumor
0.2
461
Tumor
0.2
286
Normal
0.2
388
Normal
0.2
857
Tumor
0.2
386
Normal
0.2
881
Tumor
0.2
873
Tumor
0.2
137
Tumor
0.2
436
Normal
0.2
466
Normal
0.2
863
Tumor
0.2
874
Normal
0.2
648
Normal
0.2
868
Normal
0.2
916
Normal
0.1
568
Normal
0.1
663
Tumor
0.1
444
Normal
0.1
192
Normal
0.1
1032
Normal
0.1
412
Normal
0.1
464
Normal
0.1
525
Tumor
0.1
778
Normal
0.1
728
Normal
0.1
1015
Tumor
0.1
951
Tumor
0.1
394
Normal
0.1
213
Tumor
0.1
328
Normal
0.1
191
Tumor
0.1
982
Normal
0.1
435
Tumor
0.1
564
Normal
0.1
984
Normal
0.1
493
Tumor
0.1
572
Normal
0.1
716
Normal
0.1
272
Normal
0.1
452
Normal
0.1
361
Tumor
0.1
1041
Tumor
0.1
396
Normal
0.1
574
Normal
0.1
431
Tumor
0.1
866
Normal
0.1
433
Tumor
0.1
662
Normal
0.1
141
Tumor
0.1
465
Tumor
0.1
516
Normal
0.1
746
Normal
0.1
443
Tumor
0.1
415
Tumor
0.1
462
Normal
0.1
482
Normal
0.1
432
Normal
0.1
536
Normal
0.1
472
Normal
0.1
686
Normal
0.1
392
Normal
0.1
943
Tumor
0.1
518
Normal
0.1
352
Normal
0.1
218
Normal
0.1
423
Tumor
0.1
351
Tumor
0.1
1021
Tumor
0.1
1031
Tumor
0.1
145
Tumor
0.1
981
Tumor
0.1
554
Normal
0.0
448
Normal
0.0
447
Tumor
0.0
232
Normal
0.0
1028
Normal
0.0
456
Normal
0.0
721
Tumor
0.0
642
Normal
0.0
924
Normal
0.0
467
Tumor
0.0
697
Tumor
0.0
492
Normal
0.0
357
Tumor
0.0
514
Normal
0.0
563
Tumor
0.0
471
Tumor
0.0
217
Tumor
0.0
573
Tumor
0.0
434
Normal
0.0
956
Normal
0.0
617
Tumor
0.0
926
Normal
0.0
147
Tumor
0.0
953
Tumor
0.0
195
Tumor
0.0
1014
Normal
0.0
123
Tumor
0.0
221
Tumor
0.0
528
Normal
0.0
136
Normal
0.0
468
Normal
0.0
558
Normal
0.0
864
Normal
0.0
261
Tumor
0.0
878
Normal
0.0
527
Tumor
0.0
446
Normal
0.0
262
Normal
0.0
918
Normal
0.0
523
Tumor
0.0
954
Normal
0.0
421
Tumor
0.0
526
Normal
0.0
884
Normal
0.0
915
Tumor
0.0
922
Normal
0.0
777
Tumor
0.0
162
Normal
0.0
365
Tumor
0.0
497
Tumor
0.0
672
Normal
0.0
882
Normal
-0.1
944
Normal
-0.1
384
Normal
-0.1
635
Tumor
-0.1
314
Normal
-0.1
1022
Normal
-0.1
824
Normal
-0.1
546
Normal
-0.1
428
Normal
-0.1
222
Normal
-0.1
534
Normal
-0.1
696
Normal
-0.1
426
Normal
-0.1
714
Normal
-0.1
713
Tumor
-0.1
368
Normal
-0.1
172
Normal
-0.1
715
Tumor
-0.1
955
Tumor
-0.1
481
Tumor
-0.1
978
Normal
-0.1
966
Normal
-0.1
785
Tumor
-0.1
666
Normal
-0.1
722
Normal
-0.1
723
Tumor
-0.1
186
Normal
-0.1
278
Normal
-0.1
1045
Tumor
-0.1
474
Normal
-0.1
912
Normal
-0.1
553
Tumor
-0.1
332
Normal
-0.1
298
Normal
-0.1
135
Tumor
-0.1
742
Normal
-0.1
188
Normal
-0.1
342
Normal
-0.1
422
Normal
-0.1
524
Normal
-0.1
196
Normal
-0.1
491
Tumor
-0.1
914
Normal
-0.1
362
Normal
-0.1
212
Normal
-0.1
538
Normal
-0.1
1013
Tumor
-0.1
744
Normal
-0.1
356
Normal
-0.1
376
Normal
-0.2
393
Tumor
-0.2
445
Tumor
-0.2
283
Tumor
-0.2
615
Tumor
-0.2
738
Normal
-0.2
977
Tumor
-0.2
923
Tumor
-0.2
343
Tumor
-0.2
142
Normal
-0.2
366
Normal
-0.2
148
Normal
-0.2
515
Tumor
-0.2
727
Tumor
-0.2
741
Tumor
-0.2
312
Normal
-0.2
297
Tumor
-0.2
138
Normal
-0.2
455
Tumor
-0.2
938
Normal
-0.2
545
Tumor
-0.2
425
Tumor
-0.2
354
Normal
-0.2
1042
Normal
-0.2
743
Tumor
-0.2
852
Normal
-0.2
862
Normal
-0.2
214
Normal
-0.2
344
Normal
-0.2
126
Normal
-0.2
724
Normal
-0.2
414
Normal
-0.2
132
Normal
-0.2
647
Tumor
-0.2
952
Normal
-0.2
1046
Normal
-0.3
1025
Tumor
-0.3
113
Tumor
-0.3
1016
Normal
-0.3
517
Tumor
-0.3
1026
Normal
-0.3
114
Normal
-0.3
816
Normal
-0.3
358
Normal
-0.3
146
Normal
-0.3
737
Tumor
-0.3
698
Normal
-0.3
125
Tumor
-0.3
128
Normal
-0.3
271
Tumor
-0.3
124
Normal
-0.3
463
Tumor
-0.4
223
Tumor
-0.4
127
Tumor
-0.4
1044
Normal
-0.4
858
Normal
-0.4
424
Normal
-0.4
671
Tumor
-0.4
814
Normal
-0.4
341
Tumor
-0.4
851
Tumor
-0.4
818
Normal
-0.5
112
Tumor
-0.5
391
Tumor
-0.5
131
Tumor
-0.5
661
Tumor
-0.5
111
Normal
-0.5
877
Tumor
-0.5
363
Tumor
-0.5
1043
Tumor
-0.6
983
Tumor
-0.6
665
Tumor
-0.6
815
Tumor
-0.7
813
Tumor
-0.7
695
Tumor
-0.8
411
Tumor
-1.0
921
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
