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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
56.5
Sample id
Sample description
nTPM
Amygdala nTPM: 56.5
2814
Male, age 76, right hemisphere
66.1
2514
Male, age 75, right hemisphere
60.9
1987
Female, age 91, left hemisphere
57.5
2695
Female, age 67, right hemisphere
56.2
2517
Female, age 94, left hemisphere
42.0
Basal amygdala nTPM: 45.9
1955
Male, age 76, both hemispheres
56.2
2609
Male, age 75, right hemisphere
54.9
2243
Female, age 91, right hemisphere
50.9
2110
Male, age 80, left hemisphere
43.9
2685
Female, age 94, left hemisphere
38.8
2827
Female, age 67, right hemisphere
30.9
Central amygdala nTPM: 53.1
1905
Male, age 76, both hemispheres
66.3
2515
Male, age 75, right hemisphere
64.7
2239
Male, age 80, left hemisphere
47.1
2701
Female, age 91, right hemisphere
46.9
2826
Female, age 94, left hemisphere
40.2
Corticomedial amygdala nTPM: 54.1
2428
Male, age 75, right hemisphere
69.1
2240
Male, age 76, both hemispheres
63.2
2242
Female, age 91, right hemisphere
59.1
2429
Female, age 94, left hemisphere
47.5
2829
Male, age 80, left hemisphere
45.4
2535
Female, age 67, right hemisphere
40.2
Lateral amygdala nTPM: 44.4
1883
Male, age 76, both hemispheres
60.6
2516
Male, age 75, right hemisphere
48.4
2255
Female, age 91, right hemisphere
44.3
2256
Male, age 80, left hemisphere
42.4
2534
Female, age 94, left hemisphere
38.0
2830
Female, age 67, right hemisphere
32.4
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
42.9
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 42.9
Samples: 152
Max nTPM: 145.9
Min nTPM: 26.5
Std nTPM: 11.8
Median nTPM: 41.2
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
145.9
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
86.9
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
80.3
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
67.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
66.8
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
59.1
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
58.5
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
58.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
57.4
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
54.7
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
53.1
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
52.8
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
51.0
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
50.5
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
50.3
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
49.4
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
49.1
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
48.9
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
48.9
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
48.9
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
48.8
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
48.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
48.4
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
48.3
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
48.0
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
47.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
47.1
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
46.8
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
46.7
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
46.6
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
46.3
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
46.2
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
46.1
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
46.0
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
46.0
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
46.0
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
45.9
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
45.8
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
45.6
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
45.5
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
45.5
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
45.4
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
45.3
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
45.2
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
45.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
45.1
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
45.0
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
44.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
44.2
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
44.1
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
44.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
44.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
43.9
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
43.9
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
43.8
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
43.7
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
43.3
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
43.2
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
43.0
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
42.7
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
42.7
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
42.5
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
42.4
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
42.3
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
42.0
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
41.9
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
41.9
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
41.9
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
41.8
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
41.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
41.8
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
41.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
41.7
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
41.5
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
41.4
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
41.2
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
41.1
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
41.1
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
41.0
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
41.0
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
41.0
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
41.0
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
40.9
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
40.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
40.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
40.9
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
40.8
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
40.8
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
40.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
40.8
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
40.7
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
40.4
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
40.4
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
40.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
40.0
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
39.8
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
39.5
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
39.5
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
39.3
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
39.1
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
38.8
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
38.8
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
38.8
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
38.7
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
38.7
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
38.7
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
38.6
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
38.1
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
38.1
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
38.0
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
37.6
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
37.5
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
37.4
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
37.3
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
37.3
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
37.1
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
37.0
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
36.9
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
36.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
36.8
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
36.7
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
36.6
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
36.5
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
36.4
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
36.3
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
36.2
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
35.5
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
35.3
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
35.0
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
35.0
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
34.8
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
34.6
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
34.2
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
34.1
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
33.7
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
33.2
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
32.9
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
32.9
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
32.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
32.6
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
32.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
31.8
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
31.6
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
31.4
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
31.4
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
30.8
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
30.6
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
29.7
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
28.9
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
26.9
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
26.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
26.5
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
30.0
Mouse sample
Sample description
nTPM
Amygdala nTPM: 30.1
Samples: 4
Max nTPM: 31.3
Min nTPM: 27.9
Sample A
Male
31.0
Sample B
Male
30.0
Sample C
Female
27.9
Sample D
Female
31.3
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
