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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RNPEPL1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
34.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
119.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
108.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
94.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
91.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
89.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
87.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
80.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
79.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
75.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
74.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
72.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
72.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
69.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
69.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
68.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
67.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
65.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
64.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
62.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
62.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
60.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
60.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
59.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
58.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
58.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
58.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
56.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
56.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
56.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
56.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
56.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
56.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
55.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
55.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
55.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
55.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
55.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
54.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
53.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
52.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
52.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
51.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
51.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
51.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
51.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
51.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
50.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
49.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
48.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
48.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
48.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
48.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
48.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
48.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
47.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
47.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
47.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
47.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
47.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
47.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
47.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
47.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
46.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
46.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
46.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
46.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
46.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
45.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
45.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
45.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
45.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
45.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
45.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
44.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
44.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
43.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
43.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
43.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
42.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
42.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
42.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
42.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
42.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
42.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
42.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
42.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
42.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
42.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
41.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
41.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
41.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
41.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
41.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
41.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
41.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
41.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
41.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
41.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
40.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
40.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
40.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
40.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
40.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
40.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
40.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
39.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
39.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
39.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
39.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
39.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
38.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
38.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
38.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
38.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
38.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
38.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
38.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
38.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
38.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
37.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
37.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
37.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
37.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
37.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
37.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
37.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
37.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
36.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
36.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
36.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
36.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
36.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
36.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
36.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
36.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
36.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
35.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
35.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
35.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
35.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
35.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
35.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
35.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
35.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
35.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
35.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
35.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
34.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
34.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
34.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
34.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
34.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
34.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
34.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
34.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
34.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
34.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
33.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
33.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
33.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
33.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
33.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
33.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
33.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
33.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
32.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
32.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
32.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
32.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
32.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
32.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
31.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
31.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
31.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
31.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
31.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
31.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
31.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
31.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
31.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
31.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
31.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
31.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
31.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
31.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
30.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
30.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
30.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
30.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
30.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
30.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
30.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
30.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
30.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
30.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
30.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
30.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
30.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
30.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
30.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
30.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
30.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
29.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
29.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
29.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
29.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
29.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
29.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
29.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
29.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
29.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
29.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
29.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
29.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
29.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
28.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
28.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
28.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
28.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
28.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
28.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
28.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
28.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
28.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
27.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
27.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
27.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
27.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
27.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
27.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
27.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
27.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
27.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
27.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
27.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
27.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
27.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
26.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
26.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
26.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
26.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
26.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
26.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
26.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
26.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
26.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
26.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
26.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
25.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
25.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
25.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
25.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
25.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
25.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
25.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
24.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
24.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
24.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
24.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
24.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
23.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
23.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
23.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
23.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
23.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
23.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
23.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
23.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
22.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
22.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
22.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
22.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
22.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
22.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
22.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
22.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
22.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
22.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
22.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
22.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
21.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
21.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
21.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
21.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
21.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
21.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
21.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
21.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
20.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
20.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
20.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
20.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
20.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
19.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
19.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
19.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
19.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
19.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
19.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
19.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
19.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
19.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
19.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
18.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
18.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
18.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
18.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
18.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
18.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
18.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
17.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
17.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
17.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
17.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
17.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
17.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
17.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
17.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
17.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
17.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
16.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
16.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
16.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
16.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
16.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
16.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
16.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
16.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
16.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
16.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
16.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
16.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
15.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
15.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
15.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
14.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
14.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
14.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
14.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
14.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
14.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
13.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
13.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
13.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
13.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RNPEPL1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.7
Number of samples
231
Samples
Sample
Description
TPM
DO23511
0 years, female, NA, stage:3, dead, 180 days
110.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
97.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
78.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
68.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
61.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
60.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
59.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
56.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
51.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
50.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
50.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
49.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
48.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
45.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
45.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
44.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
42.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
42.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
41.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
41.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
39.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
39.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
38.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
37.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
37.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
37.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
37.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
36.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
35.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
35.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
35.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
35.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
35.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
35.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
34.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
34.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
34.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
33.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
33.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
33.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
33.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
32.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
32.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
32.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
32.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
32.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
32.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
32.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
32.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
31.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
30.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
30.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
30.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
30.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
30.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
29.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
29.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
29.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
29.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
29.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
29.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
29.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
29.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
28.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
28.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
28.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
28.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
28.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
28.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
28.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
28.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
27.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
27.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
27.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
27.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
27.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
27.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
27.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
27.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
27.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
27.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
27.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
27.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
26.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
26.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
26.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
26.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
25.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
25.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
25.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
25.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
25.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
25.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
24.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
24.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
24.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
24.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
24.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
24.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
24.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
24.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
24.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
23.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
23.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
23.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
23.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
23.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
23.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
23.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
23.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
22.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
22.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
22.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
22.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
22.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
21.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
21.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
21.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
21.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
21.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
21.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
21.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
21.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
20.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
20.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
20.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
20.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
20.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
20.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
20.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
20.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
19.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
19.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
19.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
19.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
19.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
19.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
19.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
19.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
19.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
19.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
19.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
19.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
19.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
18.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
18.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
18.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
18.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
18.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
18.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
18.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
18.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
18.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
17.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
17.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
17.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
17.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
17.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
17.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
17.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
17.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
17.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
17.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
16.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
16.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
16.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
16.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
16.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
16.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
16.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
16.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
16.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
16.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
16.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
15.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
15.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
15.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
15.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
15.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
15.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
15.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
15.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
15.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
14.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
14.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
14.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
14.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
14.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
14.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
14.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
13.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
12.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
12.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
11.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
10.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
10.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
8.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1016
Normal
1.1
375
Tumor
1.1
878
Normal
0.9
743
Tumor
0.9
217
Tumor
0.7
395
Tumor
0.7
755
Tumor
0.7
977
Tumor
0.6
877
Tumor
0.6
222
Normal
0.6
482
Normal
0.6
745
Tumor
0.6
327
Tumor
0.5
145
Tumor
0.5
737
Tumor
0.5
416
Normal
0.5
356
Normal
0.5
341
Tumor
0.5
518
Normal
0.5
364
Normal
0.4
1026
Normal
0.4
358
Normal
0.4
481
Tumor
0.4
342
Normal
0.4
1043
Tumor
0.4
722
Normal
0.4
533
Tumor
0.4
1022
Normal
0.4
218
Normal
0.4
536
Normal
0.4
714
Normal
0.4
815
Tumor
0.3
186
Normal
0.3
172
Normal
0.3
464
Normal
0.3
188
Normal
0.3
213
Tumor
0.3
914
Normal
0.3
366
Normal
0.3
447
Tumor
0.3
148
Normal
0.3
352
Normal
0.3
343
Tumor
0.3
483
Tumor
0.3
466
Normal
0.3
881
Tumor
0.3
272
Normal
0.3
162
Normal
0.2
975
Tumor
0.2
128
Normal
0.2
493
Tumor
0.2
858
Normal
0.2
1028
Normal
0.2
268
Normal
0.2
196
Normal
0.2
363
Tumor
0.2
351
Tumor
0.2
357
Tumor
0.2
344
Normal
0.2
721
Tumor
0.2
686
Normal
0.2
538
Normal
0.2
912
Normal
0.2
191
Tumor
0.2
716
Normal
0.2
491
Tumor
0.2
452
Normal
0.2
1027
Tumor
0.2
951
Tumor
0.2
412
Normal
0.2
195
Tumor
0.2
672
Normal
0.2
354
Normal
0.2
818
Normal
0.2
396
Normal
0.2
474
Normal
0.2
534
Normal
0.2
224
Normal
0.2
124
Normal
0.1
1042
Normal
0.1
982
Normal
0.1
228
Normal
0.1
111
Normal
0.1
262
Normal
0.1
526
Normal
0.1
557
Tumor
0.1
662
Normal
0.1
955
Tumor
0.1
984
Normal
0.1
456
Normal
0.1
472
Normal
0.1
286
Normal
0.1
777
Tumor
0.1
462
Normal
0.1
138
Normal
0.1
328
Normal
0.1
746
Normal
0.1
661
Tumor
0.1
554
Normal
0.1
187
Tumor
0.1
468
Normal
0.1
864
Normal
0.1
424
Normal
0.1
642
Normal
0.1
635
Tumor
0.1
258
Normal
0.1
713
Tumor
0.1
376
Normal
0.1
665
Tumor
0.1
956
Normal
0.1
1025
Tumor
0.0
114
Normal
0.0
618
Normal
0.0
1041
Tumor
0.0
428
Normal
0.0
426
Normal
0.0
492
Normal
0.0
385
Tumor
0.0
528
Normal
0.0
937
Tumor
0.0
546
Normal
0.0
824
Normal
0.0
214
Normal
0.0
353
Tumor
0.0
967
Tumor
0.0
698
Normal
0.0
852
Normal
0.0
527
Tumor
0.0
192
Normal
0.0
461
Tumor
0.0
884
Normal
0.0
966
Normal
0.0
484
Normal
0.0
778
Normal
0.0
478
Normal
0.0
882
Normal
0.0
963
Tumor
0.0
257
Tumor
0.0
498
Normal
0.0
284
Normal
0.0
958
Normal
0.0
126
Normal
0.0
883
Tumor
0.0
465
Tumor
0.0
925
Tumor
0.0
868
Normal
-0.1
862
Normal
-0.1
863
Tumor
-0.1
232
Normal
-0.1
664
Normal
-0.1
968
Normal
-0.1
648
Normal
-0.1
477
Tumor
-0.1
671
Tumor
-0.1
813
Tumor
-0.1
666
Normal
-0.1
663
Tumor
-0.1
647
Tumor
-0.1
567
Tumor
-0.1
911
Tumor
-0.1
421
Tumor
-0.1
866
Normal
-0.1
415
Tumor
-0.1
741
Tumor
-0.1
851
Tumor
-0.1
617
Tumor
-0.1
952
Normal
-0.1
814
Normal
-0.1
283
Tumor
-0.2
636
Normal
-0.2
926
Normal
-0.2
917
Tumor
-0.2
964
Normal
-0.2
494
Normal
-0.2
414
Normal
-0.2
227
Tumor
-0.2
574
Normal
-0.2
545
Tumor
-0.2
553
Tumor
-0.2
1013
Tumor
-0.2
738
Normal
-0.2
212
Normal
-0.2
916
Normal
-0.2
127
Tumor
-0.2
785
Tumor
-0.2
616
Normal
-0.2
913
Tumor
-0.2
857
Tumor
-0.2
744
Normal
-0.2
921
Tumor
-0.2
488
Normal
-0.2
142
Normal
-0.2
471
Tumor
-0.2
146
Normal
-0.2
517
Tumor
-0.2
573
Tumor
-0.2
983
Tumor
-0.2
125
Tumor
-0.2
874
Normal
-0.2
976
Normal
-0.2
728
Normal
-0.2
1021
Tumor
-0.3
816
Normal
-0.3
944
Normal
-0.3
615
Tumor
-0.3
938
Normal
-0.3
231
Tumor
-0.3
924
Normal
-0.3
1014
Normal
-0.3
628
Normal
-0.3
147
Tumor
-0.3
1031
Tumor
-0.3
922
Normal
-0.3
185
Tumor
-0.3
411
Tumor
-0.3
867
Tumor
-0.3
918
Normal
-0.3
1044
Normal
-0.3
742
Normal
-0.3
386
Normal
-0.3
271
Tumor
-0.3
285
Tumor
-0.3
413
Tumor
-0.3
823
Tumor
-0.3
873
Tumor
-0.3
715
Tumor
-0.3
954
Normal
-0.3
451
Tumor
-0.3
487
Tumor
-0.3
627
Tumor
-0.4
467
Tumor
-0.4
571
Tumor
-0.4
756
Normal
-0.4
516
Normal
-0.4
696
Normal
-0.4
697
Tumor
-0.4
1046
Normal
-0.4
685
Tumor
-0.4
425
Tumor
-0.4
362
Normal
-0.4
524
Normal
-0.4
455
Tumor
-0.4
727
Tumor
-0.4
393
Tumor
-0.4
223
Tumor
-0.4
267
Tumor
-0.4
695
Tumor
-0.4
1045
Tumor
-0.4
1015
Tumor
-0.4
641
Tumor
-0.4
391
Tumor
-0.4
384
Normal
-0.4
473
Tumor
-0.4
915
Tumor
-0.4
953
Tumor
-0.4
537
Tumor
-0.4
514
Normal
-0.4
563
Tumor
-0.5
923
Tumor
-0.5
724
Normal
-0.5
171
Tumor
-0.5
723
Tumor
-0.5
132
Normal
-0.5
136
Normal
-0.5
422
Normal
-0.5
161
Tumor
-0.5
368
Normal
-0.5
137
Tumor
-0.5
497
Tumor
-0.5
1032
Normal
-0.5
392
Normal
-0.5
427
Tumor
-0.5
355
Tumor
-0.5
817
Tumor
-0.5
786
Normal
-0.6
221
Tumor
-0.6
394
Normal
-0.6
564
Normal
-0.6
865
Tumor
-0.6
513
Tumor
-0.6
423
Tumor
-0.6
113
Tumor
-0.6
388
Normal
-0.7
568
Normal
-0.7
943
Tumor
-0.7
515
Tumor
-0.7
957
Tumor
-0.7
211
Tumor
-0.7
112
Tumor
-0.7
141
Tumor
-0.7
387
Tumor
-0.7
463
Tumor
-0.7
978
Normal
-0.8
525
Tumor
-0.8
981
Tumor
-0.8
135
Tumor
-0.8
123
Tumor
-0.9
261
Tumor
-0.9
558
Normal
-0.9
572
Normal
-0.9
965
Tumor
-0.9
861
Tumor
-0.9
365
Tumor
-1.0
523
Tumor
-1.0
448
Normal
-1.0
383
Tumor
-1.1
367
Tumor
-1.3
361
Tumor
-1.4
131
Tumor
-1.4
535
Tumor
-2.0
277
Tumor
N/A
278
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
431
Tumor
N/A
311
Tumor
N/A
432
Normal
N/A
312
Normal
N/A
433
Tumor
N/A
313
Tumor
N/A
434
Normal
N/A
314
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
443
Tumor
N/A
444
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
331
Tumor
N/A
332
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
