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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DUS3L is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
63.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
34.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
34.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
32.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
27.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
26.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
25.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
24.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
24.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
24.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
22.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
21.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
20.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
19.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
19.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
19.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
19.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
19.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
19.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
19.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
18.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
18.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
18.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
18.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
18.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
18.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
18.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
18.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
18.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
17.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
17.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
17.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
17.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
17.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
17.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
17.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
16.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
16.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
16.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
16.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
16.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
16.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
16.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
15.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
15.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
15.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
15.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
15.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
15.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
15.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
15.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
15.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
15.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
15.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
15.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
15.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
15.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
15.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
15.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
15.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
15.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
15.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
14.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
14.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
14.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
14.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
14.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
14.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
14.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
14.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
14.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
14.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
14.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
14.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
13.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
13.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
13.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
13.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
13.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
13.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
13.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
13.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
13.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
13.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
13.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
13.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
13.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
13.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
13.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
13.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
13.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
13.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
13.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
13.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
13.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
12.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
12.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
12.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
12.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
12.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
12.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
12.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
12.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
12.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
12.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
12.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
12.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
12.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
12.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
12.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
12.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
12.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
12.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
12.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
12.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
11.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
11.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
11.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
11.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
11.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
11.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
11.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
11.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
11.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
11.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
11.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
11.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
11.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
11.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
11.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
11.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
11.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
10.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
10.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
10.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
10.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
10.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
10.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
10.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
10.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
10.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
9.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
9.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
9.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
9.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
9.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
9.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
9.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
8.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
8.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
8.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
8.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
8.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
7.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
7.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
7.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
7.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
6.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
6.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
6.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
6.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
5.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
5.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
5.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
5.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
5.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
4.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
3.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DUS3L is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.8
Number of samples
231
Samples
Sample
Description
TPM
DO48747
0 years, male, NA, stage:3, alive, 540 days
30.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
27.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
27.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
24.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
22.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
21.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
20.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
18.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
18.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
18.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
18.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
17.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
17.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
17.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
17.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
17.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
16.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
16.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
16.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
16.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
16.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
16.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
15.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
15.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
14.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
14.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
14.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
14.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
14.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
14.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
14.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
14.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
14.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
14.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
14.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
14.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
13.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
13.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
13.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
12.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
12.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
12.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
12.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
12.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
12.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
11.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
11.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
11.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
11.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
11.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
11.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
11.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
11.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
11.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
11.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
10.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
10.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
10.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
9.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
9.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
8.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
7.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
6.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
6.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
6.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
6.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
5.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
5.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
5.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
5.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
5.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
5.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
5.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
4.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
4.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
4.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
3.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
3.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
1.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
1.4
125
Tumor
1.3
497
Tumor
1.2
473
Tumor
1.1
715
Tumor
0.9
463
Tumor
0.9
147
Tumor
0.9
141
Tumor
0.8
913
Tumor
0.8
724
Normal
0.7
413
Tumor
0.7
267
Tumor
0.7
491
Tumor
0.7
271
Tumor
0.7
881
Tumor
0.7
187
Tumor
0.7
665
Tumor
0.7
221
Tumor
0.7
1025
Tumor
0.7
641
Tumor
0.7
223
Tumor
0.6
395
Tumor
0.6
467
Tumor
0.6
283
Tumor
0.6
443
Tumor
0.6
943
Tumor
0.6
737
Tumor
0.6
743
Tumor
0.5
851
Tumor
0.5
517
Tumor
0.5
963
Tumor
0.5
123
Tumor
0.5
363
Tumor
0.5
353
Tumor
0.5
671
Tumor
0.5
375
Tumor
0.5
785
Tumor
0.5
955
Tumor
0.5
923
Tumor
0.5
877
Tumor
0.5
545
Tumor
0.4
257
Tumor
0.4
217
Tumor
0.4
685
Tumor
0.4
493
Tumor
0.4
937
Tumor
0.4
227
Tumor
0.4
647
Tumor
0.4
1041
Tumor
0.4
461
Tumor
0.4
815
Tumor
0.4
777
Tumor
0.4
615
Tumor
0.4
1045
Tumor
0.4
953
Tumor
0.4
365
Tumor
0.4
383
Tumor
0.4
1031
Tumor
0.4
447
Tumor
0.4
983
Tumor
0.4
327
Tumor
0.3
435
Tumor
0.3
911
Tumor
0.3
617
Tumor
0.3
277
Tumor
0.3
483
Tumor
0.3
616
Normal
0.3
314
Normal
0.3
697
Tumor
0.3
311
Tumor
0.2
823
Tumor
0.2
824
Normal
0.2
161
Tumor
0.2
222
Normal
0.2
755
Tumor
0.2
132
Normal
0.2
428
Normal
0.2
146
Normal
0.2
426
Normal
0.2
474
Normal
0.2
433
Tumor
0.2
341
Tumor
0.2
513
Tumor
0.2
427
Tumor
0.2
967
Tumor
0.2
672
Normal
0.2
352
Normal
0.2
721
Tumor
0.2
162
Normal
0.2
131
Tumor
0.2
145
Tumor
0.2
518
Normal
0.2
425
Tumor
0.2
285
Tumor
0.2
113
Tumor
0.2
148
Normal
0.2
516
Normal
0.2
436
Normal
0.2
884
Normal
0.1
627
Tumor
0.1
414
Normal
0.1
471
Tumor
0.1
661
Tumor
0.1
557
Tumor
0.1
354
Normal
0.1
186
Normal
0.1
648
Normal
0.1
423
Tumor
0.1
361
Tumor
0.1
368
Normal
0.1
745
Tumor
0.1
863
Tumor
0.1
172
Normal
0.1
366
Normal
0.1
444
Normal
0.1
136
Normal
0.1
344
Normal
0.1
411
Tumor
0.1
1046
Normal
0.1
862
Normal
0.1
977
Tumor
0.1
331
Tumor
0.1
258
Normal
0.1
858
Normal
0.1
536
Normal
0.1
515
Tumor
0.1
492
Normal
0.1
376
Normal
0.1
298
Normal
0.1
484
Normal
0.1
342
Normal
0.1
957
Tumor
0.1
861
Tumor
0.1
746
Normal
0.1
364
Normal
0.1
481
Tumor
0.1
966
Normal
0.1
865
Tumor
0.1
498
Normal
0.1
525
Tumor
0.1
857
Tumor
0.1
446
Normal
0.1
192
Normal
0.1
912
Normal
0.1
416
Normal
0.1
142
Normal
0.1
526
Normal
0.1
138
Normal
0.1
362
Normal
0.1
188
Normal
0.1
666
Normal
0.1
191
Tumor
0.1
268
Normal
0.1
523
Tumor
0.1
727
Tumor
0.1
332
Normal
0.1
874
Normal
0.0
786
Normal
0.0
864
Normal
0.0
351
Tumor
0.0
528
Normal
0.0
211
Tumor
0.0
1022
Normal
0.0
126
Normal
0.0
756
Normal
0.0
396
Normal
0.0
1043
Tumor
0.0
618
Normal
0.0
448
Normal
0.0
922
Normal
0.0
284
Normal
0.0
546
Normal
0.0
882
Normal
0.0
384
Normal
0.0
356
Normal
0.0
482
Normal
0.0
472
Normal
0.0
852
Normal
0.0
114
Normal
0.0
873
Tumor
0.0
451
Tumor
0.0
213
Tumor
0.0
312
Normal
0.0
524
Normal
0.0
926
Normal
0.0
952
Normal
0.0
696
Normal
0.0
866
Normal
0.0
432
Normal
0.0
716
Normal
0.0
954
Normal
0.0
868
Normal
0.0
224
Normal
0.0
424
Normal
0.0
214
Normal
0.0
558
Normal
0.0
664
Normal
0.0
262
Normal
0.0
1015
Tumor
0.0
878
Normal
0.0
564
Normal
0.0
328
Normal
0.0
195
Tumor
0.0
818
Normal
0.0
1042
Normal
0.0
278
Normal
0.0
982
Normal
0.0
573
Tumor
0.0
185
Tumor
0.0
196
Normal
-0.1
723
Tumor
-0.1
534
Normal
-0.1
635
Tumor
-0.1
714
Normal
-0.1
297
Tumor
-0.1
944
Normal
-0.1
778
Normal
-0.1
355
Tumor
-0.1
938
Normal
-0.1
984
Normal
-0.1
628
Normal
-0.1
137
Tumor
-0.1
422
Normal
-0.1
916
Normal
-0.1
171
Tumor
-0.1
964
Normal
-0.1
135
Tumor
-0.1
286
Normal
-0.1
924
Normal
-0.1
1014
Normal
-0.1
358
Normal
-0.1
921
Tumor
-0.1
535
Tumor
-0.1
128
Normal
-0.1
1044
Normal
-0.1
914
Normal
-0.1
218
Normal
-0.1
1016
Normal
-0.1
388
Normal
-0.1
445
Tumor
-0.1
1032
Normal
-0.1
958
Normal
-0.1
228
Normal
-0.1
956
Normal
-0.1
272
Normal
-0.1
722
Normal
-0.1
232
Normal
-0.1
468
Normal
-0.1
951
Tumor
-0.1
553
Tumor
-0.1
386
Normal
-0.1
1026
Normal
-0.1
744
Normal
-0.1
968
Normal
-0.1
313
Tumor
-0.1
514
Normal
-0.1
574
Normal
-0.1
686
Normal
-0.1
452
Normal
-0.1
662
Normal
-0.1
918
Normal
-0.1
915
Tumor
-0.2
917
Tumor
-0.2
434
Normal
-0.2
816
Normal
-0.2
563
Tumor
-0.2
343
Tumor
-0.2
456
Normal
-0.2
387
Tumor
-0.2
464
Normal
-0.2
814
Normal
-0.2
392
Normal
-0.2
698
Normal
-0.2
538
Normal
-0.2
111
Normal
-0.2
663
Tumor
-0.2
1021
Tumor
-0.2
817
Tumor
-0.2
124
Normal
-0.2
568
Normal
-0.2
412
Normal
-0.2
494
Normal
-0.2
127
Tumor
-0.2
527
Tumor
-0.2
462
Normal
-0.2
212
Normal
-0.3
742
Normal
-0.3
978
Normal
-0.3
394
Normal
-0.3
642
Normal
-0.3
487
Tumor
-0.3
728
Normal
-0.3
385
Tumor
-0.3
466
Normal
-0.3
883
Tumor
-0.3
636
Normal
-0.3
112
Tumor
-0.3
537
Tumor
-0.3
431
Tumor
-0.3
1028
Normal
-0.3
455
Tumor
-0.3
478
Normal
-0.3
981
Tumor
-0.3
554
Normal
-0.3
695
Tumor
-0.3
572
Normal
-0.4
261
Tumor
-0.4
488
Normal
-0.4
567
Tumor
-0.4
713
Tumor
-0.4
867
Tumor
-0.4
421
Tumor
-0.4
391
Tumor
-0.4
367
Tumor
-0.4
357
Tumor
-0.4
415
Tumor
-0.4
465
Tumor
-0.4
477
Tumor
-0.5
231
Tumor
-0.5
1013
Tumor
-0.5
738
Normal
-0.5
976
Normal
-0.5
571
Tumor
-0.6
813
Tumor
-0.6
393
Tumor
-0.7
741
Tumor
-0.8
533
Tumor
-0.8
925
Tumor
-0.8
975
Tumor
-1.2
1027
Tumor
-1.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
