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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BRD4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
89.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
69.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
44.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
36.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
34.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
33.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
33.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
32.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
31.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
30.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
29.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
29.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
29.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
28.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
28.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
27.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
27.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
26.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
26.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
25.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
25.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
25.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
24.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
24.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
24.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
24.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
24.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
23.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
23.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
23.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
22.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
22.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
22.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
21.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
21.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
21.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
21.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
21.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
21.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
21.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
21.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
20.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
20.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
20.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
20.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
20.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
20.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
20.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
20.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
20.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
20.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
20.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
20.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
20.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
19.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
19.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
19.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
19.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
19.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
19.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
19.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
19.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
19.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
18.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
18.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
18.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
18.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
18.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
18.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
18.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
18.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
17.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
17.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
17.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
17.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
17.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
17.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
17.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
17.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
17.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
17.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
17.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
17.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
16.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
16.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
16.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
16.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
16.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
16.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
16.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
16.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
16.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
16.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
16.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
15.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
15.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
15.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
15.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
15.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
15.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
15.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
15.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
15.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
15.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
15.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
15.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
15.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
15.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
15.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
15.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
15.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
15.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
14.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
14.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
14.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
14.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
14.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
14.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
14.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
14.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
14.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
14.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
14.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
14.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
14.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
14.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
14.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
14.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
14.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
13.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
13.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
13.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
13.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
13.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
13.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
13.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
13.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
13.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
13.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
13.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
13.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
13.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
13.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
13.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
13.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
13.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
13.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
13.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
13.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
13.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
13.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
13.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
12.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
12.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
12.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
12.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
11.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
11.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
11.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
11.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
11.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
11.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
11.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
11.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
11.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
11.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
11.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
11.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
11.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
10.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
10.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
10.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
10.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
10.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
10.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
10.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
10.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
10.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
9.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
9.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
9.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
9.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
9.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
9.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
9.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
9.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
8.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
8.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
8.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
8.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
7.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
7.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
7.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BRD4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.1
Number of samples
231
Samples
Sample
Description
TPM
DO45281
0 years, male, NA, stage:4, alive, 750 days
49.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
31.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
31.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
21.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
18.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
17.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
17.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
16.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
16.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
16.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
16.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
16.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
15.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
14.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
14.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
14.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
14.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
14.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
13.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
13.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
13.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
13.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
12.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
12.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
12.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
12.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
12.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
11.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
11.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
11.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
11.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
11.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
11.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
11.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
11.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
11.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
10.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
10.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
10.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
10.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
10.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
10.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
10.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
10.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
10.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
10.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
10.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
10.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
9.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
9.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
9.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
8.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
8.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
8.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
8.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
7.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
7.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
7.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
7.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
6.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
6.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
6.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
6.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
6.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
6.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
6.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
5.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
5.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
5.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
5.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
4.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
4.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
4.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
4.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
3.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
3.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
3.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
3.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
3.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
3.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
2.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
2.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
661
Tumor
1.6
967
Tumor
1.3
131
Tumor
1.0
743
Tumor
1.0
285
Tumor
0.9
965
Tumor
0.9
211
Tumor
0.8
1031
Tumor
0.8
881
Tumor
0.7
523
Tumor
0.7
951
Tumor
0.7
813
Tumor
0.7
385
Tumor
0.7
425
Tumor
0.7
473
Tumor
0.6
1013
Tumor
0.6
983
Tumor
0.6
355
Tumor
0.6
977
Tumor
0.6
277
Tumor
0.6
641
Tumor
0.6
283
Tumor
0.6
411
Tumor
0.6
865
Tumor
0.6
943
Tumor
0.6
737
Tumor
0.5
431
Tumor
0.5
221
Tumor
0.5
463
Tumor
0.5
647
Tumor
0.5
331
Tumor
0.5
685
Tumor
0.5
923
Tumor
0.5
817
Tumor
0.5
921
Tumor
0.5
877
Tumor
0.5
413
Tumor
0.5
917
Tumor
0.5
883
Tumor
0.5
271
Tumor
0.4
447
Tumor
0.4
545
Tumor
0.4
497
Tumor
0.4
567
Tumor
0.4
814
Normal
0.4
391
Tumor
0.4
785
Tumor
0.4
963
Tumor
0.4
663
Tumor
0.4
297
Tumor
0.4
493
Tumor
0.4
695
Tumor
0.4
537
Tumor
0.4
461
Tumor
0.4
311
Tumor
0.4
571
Tumor
0.4
445
Tumor
0.4
483
Tumor
0.3
975
Tumor
0.3
123
Tumor
0.3
351
Tumor
0.3
1025
Tumor
0.3
715
Tumor
0.3
435
Tumor
0.3
267
Tumor
0.3
161
Tumor
0.3
443
Tumor
0.3
937
Tumor
0.3
515
Tumor
0.3
815
Tumor
0.3
367
Tumor
0.3
863
Tumor
0.3
141
Tumor
0.3
465
Tumor
0.3
873
Tumor
0.3
777
Tumor
0.3
471
Tumor
0.3
535
Tumor
0.3
533
Tumor
0.3
727
Tumor
0.3
553
Tumor
0.3
313
Tumor
0.3
563
Tumor
0.3
721
Tumor
0.3
1021
Tumor
0.3
455
Tumor
0.3
375
Tumor
0.2
517
Tumor
0.2
536
Normal
0.2
671
Tumor
0.2
913
Tumor
0.2
953
Tumor
0.2
171
Tumor
0.2
192
Normal
0.2
343
Tumor
0.2
467
Tumor
0.2
491
Tumor
0.2
911
Tumor
0.2
147
Tumor
0.2
1015
Tumor
0.2
527
Tumor
0.2
363
Tumor
0.2
478
Normal
0.2
357
Tumor
0.2
524
Normal
0.2
487
Tumor
0.2
867
Tumor
0.2
615
Tumor
0.2
498
Normal
0.2
383
Tumor
0.2
984
Normal
0.2
492
Normal
0.2
1045
Tumor
0.2
665
Tumor
0.2
755
Tumor
0.1
538
Normal
0.1
365
Tumor
0.1
423
Tumor
0.1
268
Normal
0.1
823
Tumor
0.1
861
Tumor
0.1
125
Tumor
0.1
851
Tumor
0.1
724
Normal
0.1
444
Normal
0.1
185
Tumor
0.1
217
Tumor
0.1
716
Normal
0.1
525
Tumor
0.1
573
Tumor
0.1
393
Tumor
0.1
1041
Tumor
0.1
1014
Normal
0.1
744
Normal
0.1
957
Tumor
0.1
686
Normal
0.1
954
Normal
0.1
191
Tumor
0.1
415
Tumor
0.1
395
Tumor
0.1
635
Tumor
0.1
434
Normal
0.1
857
Tumor
0.1
188
Normal
0.1
213
Tumor
0.1
513
Tumor
0.1
433
Tumor
0.1
146
Normal
0.1
223
Tumor
0.1
384
Normal
0.1
427
Tumor
0.0
925
Tumor
0.0
627
Tumor
0.0
978
Normal
0.0
187
Tumor
0.0
924
Normal
0.0
938
Normal
0.0
852
Normal
0.0
472
Normal
0.0
966
Normal
0.0
628
Normal
0.0
1046
Normal
0.0
916
Normal
0.0
915
Tumor
0.0
481
Tumor
0.0
516
Normal
0.0
1044
Normal
0.0
227
Tumor
0.0
142
Normal
0.0
386
Normal
0.0
958
Normal
0.0
672
Normal
0.0
714
Normal
0.0
224
Normal
0.0
312
Normal
0.0
922
Normal
0.0
878
Normal
0.0
874
Normal
0.0
361
Tumor
0.0
412
Normal
0.0
697
Tumor
0.0
698
Normal
0.0
866
Normal
0.0
976
Normal
0.0
884
Normal
0.0
1043
Tumor
0.0
741
Tumor
0.0
662
Normal
0.0
261
Tumor
0.0
195
Tumor
0.0
955
Tumor
0.0
1032
Normal
0.0
396
Normal
0.0
636
Normal
0.0
818
Normal
0.0
664
Normal
0.0
981
Tumor
0.0
862
Normal
0.0
572
Normal
0.0
952
Normal
0.0
756
Normal
0.0
778
Normal
0.0
617
Tumor
0.0
918
Normal
0.0
868
Normal
0.0
557
Tumor
0.0
328
Normal
0.0
135
Tumor
0.0
448
Normal
0.0
666
Normal
0.0
1042
Normal
-0.1
558
Normal
-0.1
126
Normal
-0.1
912
Normal
-0.1
148
Normal
-0.1
1028
Normal
-0.1
786
Normal
-0.1
162
Normal
-0.1
534
Normal
-0.1
364
Normal
-0.1
982
Normal
-0.1
462
Normal
-0.1
421
Tumor
-0.1
477
Tumor
-0.1
1027
Tumor
-0.1
738
Normal
-0.1
392
Normal
-0.1
864
Normal
-0.1
816
Normal
-0.1
648
Normal
-0.1
554
Normal
-0.1
528
Normal
-0.1
231
Tumor
-0.1
882
Normal
-0.1
362
Normal
-0.1
341
Tumor
-0.1
713
Tumor
-0.1
138
Normal
-0.1
1016
Normal
-0.1
696
Normal
-0.1
1026
Normal
-0.1
488
Normal
-0.1
964
Normal
-0.1
196
Normal
-0.1
518
Normal
-0.1
222
Normal
-0.1
127
Tumor
-0.1
366
Normal
-0.1
728
Normal
-0.1
218
Normal
-0.1
824
Normal
-0.1
344
Normal
-0.1
642
Normal
-0.1
388
Normal
-0.1
272
Normal
-0.1
968
Normal
-0.1
212
Normal
-0.1
494
Normal
-0.1
956
Normal
-0.1
446
Normal
-0.1
926
Normal
-0.1
376
Normal
-0.1
482
Normal
-0.1
574
Normal
-0.1
186
Normal
-0.1
546
Normal
-0.1
451
Tumor
-0.1
742
Normal
-0.1
484
Normal
-0.1
387
Tumor
-0.1
746
Normal
-0.1
214
Normal
-0.1
616
Normal
-0.1
618
Normal
-0.1
432
Normal
-0.1
1022
Normal
-0.1
514
Normal
-0.2
944
Normal
-0.2
368
Normal
-0.2
114
Normal
-0.2
394
Normal
-0.2
356
Normal
-0.2
416
Normal
-0.2
124
Normal
-0.2
128
Normal
-0.2
137
Tumor
-0.2
474
Normal
-0.2
327
Tumor
-0.2
858
Normal
-0.2
232
Normal
-0.2
262
Normal
-0.2
172
Normal
-0.2
352
Normal
-0.2
464
Normal
-0.2
722
Normal
-0.2
278
Normal
-0.2
298
Normal
-0.2
332
Normal
-0.2
284
Normal
-0.2
564
Normal
-0.2
436
Normal
-0.2
456
Normal
-0.2
723
Tumor
-0.2
468
Normal
-0.2
136
Normal
-0.2
228
Normal
-0.2
258
Normal
-0.2
914
Normal
-0.2
145
Tumor
-0.2
132
Normal
-0.2
112
Tumor
-0.2
568
Normal
-0.2
111
Normal
-0.2
526
Normal
-0.2
466
Normal
-0.2
422
Normal
-0.2
452
Normal
-0.3
354
Normal
-0.3
426
Normal
-0.3
257
Tumor
-0.3
113
Tumor
-0.3
353
Tumor
-0.3
424
Normal
-0.3
286
Normal
-0.3
314
Normal
-0.3
342
Normal
-0.3
358
Normal
-0.3
428
Normal
-0.3
414
Normal
-0.4
745
Tumor
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
