MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:131.2 nTPM
HPA Brain:69.2 nTPM
GTEx:131.2 nTPM
FANTOM5:125.6 Scaled Tags Per Million
Pig:32.4 nTPM
Mouse:10.7 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 69.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.2
2411 Female, age 72, unknown 61.6
2019 Male, age 18, unknown 60.1
1870 Female, age 42, unknown 55.9
2219 Male, age 76, both hemispheres 55.1
1827 Male, age 72, unknown 50.8
2586 Male, age 75, left hemisphere 49.8
1833 Male, age 53, unknown 49.5
1830 Male, age 51, unknown 45.9
2666 Male, age 74, left hemisphere 44.2
2828 Female, age 72, unknown 38.9
Dorsal raphe nucleus
nTPM: 57.1
2298 Female, age 72, unknown 66.4
2750 Male, age 76, both hemispheres 63.6
2047 Male, age 72, unknown 56.0
1828 Male, age 53, unknown 52.6
2016 Female, age 72, unknown 46.8
Inferior colliculus
nTPM: 46.8
2097 Female, age 72, unknown 58.3
1890 Male, age 53, unknown 49.8
1848 Female, age 42, unknown 42.6
2849 Male, age 72, unknown 36.6
Median raphe nucleus
nTPM: 61.7
2220 Male, age 76, midline 61.7
Periaquaductal grey, anterior
nTPM: 50.0
1947 Male, age 18, unknown 55.3
1795 Male, age 51, unknown 51.3
2502 Female, age 75, unknown 43.4
Periaquaductal grey, dorsal
nTPM: 41.7
2464 Female, age 72, unknown 44.1
1840 Male, age 53, unknown 42.6
2850 Male, age 76, both hemispheres 41.7
1831 Male, age 72, unknown 38.6
Periaquaductal grey, lateral
nTPM: 43.4
2272 Male, age 74, both hemispheres 49.2
2053 Male, age 18, unknown 42.6
2140 Male, age 76, both hemispheres 38.3
Pretectal area
nTPM: 54.0
2007 Male, age 72, unknown 67.2
1816 Male, age 51, unknown 61.4
1817 Female, age 42, unknown 60.3
1815 Male, age 53, unknown 59.0
1944 Female, age 72, unknown 58.4
2224 Female, age 72, unknown 54.9
2667 Female, age 75, unknown 54.0
2273 Male, age 74, both hemispheres 53.0
2316 Male, age 76, right hemisphere 45.0
2825 Male, age 18, unknown 42.8
2407 Male, age 75, both hemispheres 38.1
Red nucleus
nTPM: 55.2
1821 Female, age 72, unknown 70.9
2725 Female, age 75, unknown 60.8
1904 Male, age 53, unknown 59.6
2503 Female, age 72, unknown 57.1
1954 Female, age 42, unknown 56.6
2227 Male, age 72, unknown 55.1
2769 Male, age 72, unknown 51.8
2785 Male, age 18, unknown 51.6
1865 Male, age 51, unknown 50.9
2588 Male, age 74, left hemisphere 50.8
2823 Male, age 76, right hemisphere 49.5
2584 Male, age 75, left hemisphere 47.2
Substantia nigra
nTPM: 69.2
1916 Female, age 42, unknown 84.4
2241 Male, age 72, unknown 83.6
1851 Male, age 51, unknown 83.5
2409 Female, age 72, unknown 77.0
1889 Female, age 72, unknown 69.2
1941 Male, age 53, unknown 63.5
2699 Male, age 18, unknown 61.2
2590 Female, age 75, unknown 59.0
2665 Male, age 74, both hemispheres 57.9
2583 Male, age 75, right hemisphere 53.2
Superior colliculus
nTPM: 46.6
2668 Female, age 75, unknown 54.6
2261 Male, age 18, unknown 52.4
1913 Female, age 42, unknown 52.2
2087 Female, age 72, unknown 52.0
1796 Male, age 53, unknown 50.2
1895 Male, age 76, right hemisphere 46.2
1995 Male, age 72, unknown 43.2
2587 Male, age 74, left hemisphere 41.8
1839 Male, age 51, unknown 41.4
2664 Male, age 75, both hemispheres 32.5
Ventral tegmental area
nTPM: 64.1
2410 Female, age 72, unknown 73.0
1915 Female, age 42, unknown 72.6
2223 Female, age 72, unknown 64.4
2218 Male, age 76, both hemispheres 63.9
1942 Male, age 51, unknown 58.3
2021 Male, age 53, unknown 52.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 131.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 131.2
Samples: 139

Max nTPM: 326.0
Min nTPM: 71.3
Std nTPM: 35.4
Median nTPM: 126.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 326.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 244.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 220.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 209.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 203.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 197.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 197.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 192.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 181.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 180.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 174.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 125.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 125.6
FF:10158-103A5 76 years, female 125.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 32.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 29.6
Samples: 4

Max nTPM: 38.4
Min nTPM: 20.0
Sample A Female 38.4
Sample B Female 26.3
Sample C Male 33.5
Sample D Male 20.0
Midbrain
nTPM: 30.4
Samples: 4

Max nTPM: 34.5
Min nTPM: 27.5
Sample A Female 27.5
Sample B Female 28.5
Sample C Male 34.5
Sample D Male 31.0
Periaqueductal gray
nTPM: 27.1
Samples: 3

Max nTPM: 31.0
Min nTPM: 25.0
Sample B Female 25.0
Sample C Male 31.0
Sample D Male 25.3
Superior colliculi
nTPM: 32.4
Samples: 4

Max nTPM: 37.3
Min nTPM: 26.5
Sample A Female 35.1
Sample B Female 26.5
Sample C Male 37.3
Sample D Male 30.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 10.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.7
Samples: 4

Max nTPM: 11.5
Min nTPM: 9.7
Sample A Male 9.7
Sample B Male 10.6
Sample C Female 11.5
Sample D Female 11.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
68795466 Antisense, RP_050118_01_H03, Mouse strain C57BL/6J (56 days, male) 0.3

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