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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GRB7 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: 1.63
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
0.076
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
47%
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
49%
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
125.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
80.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
72.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
66.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
64.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
61.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
55.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
53.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
53.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
51.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
48.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
27.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
27.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
26.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
26.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
25.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
24.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
24.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
24.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
23.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
23.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
23.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
22.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
22.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
21.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
21.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
19.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
18.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
18.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
18.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
18.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
17.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
16.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
15.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
15.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
15.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
14.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
14.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
13.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
13.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
13.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
13.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
13.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
12.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
12.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
12.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
12.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
12.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
12.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
11.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
11.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
11.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
11.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
11.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
11.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
11.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
10.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
10.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
10.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
10.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
10.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
10.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
9.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
8.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
8.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
8.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
7.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
7.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
7.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
7.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
7.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
7.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
6.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
6.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
6.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
6.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
6.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
6.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
6.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
6.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
5.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
5.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
5.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
5.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
5.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
5.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
5.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
4.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
4.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
4.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
4.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
4.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
4.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
3.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
3.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
3.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
3.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
3.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
3.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
3.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
3.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
3.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
3.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
3.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
3.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
2.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
2.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
2.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
2.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
2.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
2.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
2.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
2.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
2.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
2.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
2.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
2.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
2.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
1.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
1.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
1.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
1.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
1.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
1.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
1.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
1.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GRB7 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: 2.14
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
0.0029
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
0%
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
83%
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.7
Number of samples
231
Samples
Sample
Description
TPM
DO45289
0 years, female, NA, stage:3, alive, 360 days
97.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
68.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
56.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
48.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
46.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
45.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
43.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
39.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
39.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
35.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
35.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
33.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
31.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
27.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
25.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
24.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
23.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
22.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
22.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
22.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
21.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
20.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
19.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
17.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
17.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
16.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
16.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
16.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
16.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
15.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
13.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
13.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
13.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
12.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
11.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
11.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
11.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
10.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
10.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
9.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
9.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
9.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
9.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
8.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
7.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
7.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
6.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
6.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
6.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
6.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
6.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
5.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
5.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
5.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
5.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
5.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
5.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
5.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
5.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
4.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
4.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
4.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
4.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
4.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
4.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
4.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
4.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
4.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
4.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
4.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
4.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
4.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
4.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
3.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
3.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
3.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
3.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
3.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
3.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
3.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
3.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
3.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
3.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
3.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
3.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
3.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
3.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
3.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
3.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
3.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
3.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
3.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
3.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
2.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
2.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
2.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
2.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
2.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
2.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
2.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
2.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
2.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
2.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
2.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
2.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
2.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
2.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
2.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
2.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
2.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
2.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
2.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
2.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
2.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
2.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
1.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
1.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
1.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
1.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
1.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
1.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
1.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
1.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
1.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
1.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
1.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
1.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
1.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
1.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
1.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
1.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
1.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
1.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
1.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
1.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
0.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
1.8
671
Tumor
1.5
983
Tumor
1.1
951
Tumor
1.1
112
Tumor
1.0
285
Tumor
0.9
877
Tumor
0.9
297
Tumor
0.9
695
Tumor
0.8
661
Tumor
0.8
535
Tumor
0.8
131
Tumor
0.8
545
Tumor
0.7
447
Tumor
0.7
465
Tumor
0.7
473
Tumor
0.7
196
Normal
0.6
413
Tumor
0.6
311
Tumor
0.6
222
Normal
0.6
517
Tumor
0.6
218
Normal
0.5
965
Tumor
0.5
391
Tumor
0.5
881
Tumor
0.5
343
Tumor
0.5
445
Tumor
0.5
388
Normal
0.5
448
Normal
0.5
498
Normal
0.4
911
Tumor
0.4
283
Tumor
0.4
147
Tumor
0.4
394
Normal
0.4
395
Tumor
0.4
455
Tumor
0.4
277
Tumor
0.4
883
Tumor
0.4
527
Tumor
0.4
385
Tumor
0.4
641
Tumor
0.4
227
Tumor
0.4
357
Tumor
0.4
488
Normal
0.4
328
Normal
0.4
1021
Tumor
0.4
1031
Tumor
0.4
635
Tumor
0.4
817
Tumor
0.4
332
Normal
0.4
967
Tumor
0.4
427
Tumor
0.3
558
Normal
0.3
431
Tumor
0.3
231
Tumor
0.3
981
Tumor
0.3
823
Tumor
0.3
314
Normal
0.3
358
Normal
0.3
568
Normal
0.3
392
Normal
0.3
278
Normal
0.3
884
Normal
0.3
435
Tumor
0.3
284
Normal
0.3
214
Normal
0.3
824
Normal
0.3
954
Normal
0.3
331
Tumor
0.3
432
Normal
0.3
342
Normal
0.3
396
Normal
0.3
171
Tumor
0.3
444
Normal
0.3
1044
Normal
0.3
953
Tumor
0.3
944
Normal
0.3
557
Tumor
0.2
963
Tumor
0.2
433
Tumor
0.2
563
Tumor
0.2
484
Normal
0.2
564
Normal
0.2
386
Normal
0.2
572
Normal
0.2
463
Tumor
0.2
816
Normal
0.2
443
Tumor
0.2
977
Tumor
0.2
715
Tumor
0.2
882
Normal
0.2
744
Normal
0.2
878
Normal
0.2
713
Tumor
0.2
452
Normal
0.2
446
Normal
0.2
1014
Normal
0.2
224
Normal
0.2
666
Normal
0.2
647
Tumor
0.2
571
Tumor
0.2
553
Tumor
0.2
354
Normal
0.2
128
Normal
0.2
867
Tumor
0.1
874
Normal
0.1
114
Normal
0.1
466
Normal
0.1
648
Normal
0.1
127
Tumor
0.1
393
Tumor
0.1
864
Normal
0.1
312
Normal
0.1
858
Normal
0.1
984
Normal
0.1
573
Tumor
0.1
126
Normal
0.1
436
Normal
0.1
742
Normal
0.1
421
Tumor
0.1
132
Normal
0.1
514
Normal
0.1
434
Normal
0.1
923
Tumor
0.1
536
Normal
0.1
298
Normal
0.1
818
Normal
0.1
111
Normal
0.1
982
Normal
0.1
341
Tumor
0.1
364
Normal
0.1
664
Normal
0.1
672
Normal
0.1
957
Tumor
0.1
351
Tumor
0.1
662
Normal
0.1
574
Normal
0.1
914
Normal
0.1
352
Normal
0.1
482
Normal
0.1
494
Normal
0.1
423
Tumor
0.0
741
Tumor
0.0
267
Tumor
0.0
135
Tumor
0.0
513
Tumor
0.0
938
Normal
0.0
426
Normal
0.0
424
Normal
0.0
698
Normal
0.0
464
Normal
0.0
785
Tumor
0.0
478
Normal
0.0
124
Normal
0.0
1016
Normal
0.0
471
Tumor
0.0
456
Normal
0.0
873
Tumor
0.0
975
Tumor
0.0
642
Normal
0.0
912
Normal
0.0
924
Normal
0.0
212
Normal
0.0
636
Normal
0.0
567
Tumor
0.0
228
Normal
0.0
192
Normal
0.0
916
Normal
0.0
866
Normal
0.0
851
Tumor
0.0
913
Tumor
0.0
217
Tumor
0.0
257
Tumor
0.0
477
Tumor
0.0
286
Normal
0.0
493
Tumor
0.0
937
Tumor
0.0
618
Normal
0.0
1043
Tumor
0.0
714
Normal
0.0
497
Tumor
0.0
862
Normal
0.0
261
Tumor
0.0
518
Normal
0.0
727
Tumor
0.0
272
Normal
0.0
344
Normal
0.0
918
Normal
0.0
1026
Normal
0.0
722
Normal
0.0
195
Tumor
0.0
1042
Normal
0.0
738
Normal
0.0
756
Normal
-0.1
538
Normal
-0.1
422
Normal
-0.1
746
Normal
-0.1
526
Normal
-0.1
1025
Tumor
-0.1
917
Tumor
-0.1
462
Normal
-0.1
137
Tumor
-0.1
524
Normal
-0.1
492
Normal
-0.1
468
Normal
-0.1
964
Normal
-0.1
145
Tumor
-0.1
943
Tumor
-0.1
262
Normal
-0.1
162
Normal
-0.1
188
Normal
-0.1
1046
Normal
-0.1
868
Normal
-0.1
487
Tumor
-0.1
976
Normal
-0.1
523
Tumor
-0.1
451
Tumor
-0.1
1028
Normal
-0.1
716
Normal
-0.1
161
Tumor
-0.1
146
Normal
-0.1
1041
Tumor
-0.1
516
Normal
-0.1
852
Normal
-0.1
723
Tumor
-0.1
185
Tumor
-0.1
148
Normal
-0.1
232
Normal
-0.1
515
Tumor
-0.2
863
Tumor
-0.2
172
Normal
-0.2
474
Normal
-0.2
952
Normal
-0.2
461
Tumor
-0.2
685
Tumor
-0.2
728
Normal
-0.2
387
Tumor
-0.2
414
Normal
-0.2
356
Normal
-0.2
136
Normal
-0.2
363
Tumor
-0.2
978
Normal
-0.2
546
Normal
-0.2
926
Normal
-0.2
696
Normal
-0.2
186
Normal
-0.2
1032
Normal
-0.2
258
Normal
-0.2
665
Tumor
-0.2
472
Normal
-0.2
142
Normal
-0.2
353
Tumor
-0.2
411
Tumor
-0.2
966
Normal
-0.2
956
Normal
-0.2
113
Tumor
-0.2
138
Normal
-0.2
958
Normal
-0.2
141
Tumor
-0.2
528
Normal
-0.2
686
Normal
-0.2
921
Tumor
-0.2
628
Normal
-0.2
1022
Normal
-0.2
125
Tumor
-0.2
616
Normal
-0.3
491
Tumor
-0.3
865
Tumor
-0.3
223
Tumor
-0.3
187
Tumor
-0.3
786
Normal
-0.3
857
Tumor
-0.3
191
Tumor
-0.3
1015
Tumor
-0.3
663
Tumor
-0.3
123
Tumor
-0.3
955
Tumor
-0.3
777
Tumor
-0.3
554
Normal
-0.3
724
Normal
-0.3
737
Tumor
-0.3
313
Tumor
-0.3
534
Normal
-0.3
1045
Tumor
-0.3
1013
Tumor
-0.3
481
Tumor
-0.3
968
Normal
-0.3
617
Tumor
-0.3
1027
Tumor
-0.3
813
Tumor
-0.3
211
Tumor
-0.4
428
Normal
-0.4
483
Tumor
-0.4
268
Normal
-0.4
745
Tumor
-0.4
925
Tumor
-0.4
425
Tumor
-0.4
755
Tumor
-0.4
861
Tumor
-0.4
221
Tumor
-0.4
525
Tumor
-0.4
615
Tumor
-0.4
537
Tumor
-0.5
271
Tumor
-0.5
416
Normal
-0.5
922
Normal
-0.5
778
Normal
-0.5
814
Normal
-0.5
213
Tumor
-0.5
721
Tumor
-0.6
915
Tumor
-0.6
412
Normal
-0.6
697
Tumor
-0.6
627
Tumor
-0.6
815
Tumor
-0.6
533
Tumor
-0.8
355
Tumor
-0.8
467
Tumor
-0.9
415
Tumor
-1.0
327
Tumor
-1.0
361
Tumor
N/A
362
Normal
N/A
365
Tumor
N/A
366
Normal
N/A
367
Tumor
N/A
368
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
383
Tumor
N/A
384
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.