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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ERBB2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
255.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
139.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
120.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
111.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
92.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
91.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
89.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
80.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
78.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
78.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
78.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
73.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
73.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
70.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
69.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
69.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
68.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
68.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
62.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
59.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
57.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
54.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
54.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
53.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
52.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
51.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
51.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
51.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
50.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
50.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
50.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
50.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
50.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
49.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
48.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
47.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
47.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
46.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
45.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
45.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
45.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
44.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
43.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
43.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
43.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
43.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
42.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
42.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
41.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
40.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
40.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
40.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
39.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
39.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
39.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
38.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
38.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
37.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
37.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
37.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
37.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
37.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
37.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
36.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
36.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
36.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
36.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
36.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
35.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
35.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
35.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
35.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
35.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
35.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
35.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
35.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
33.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
33.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
33.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
33.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
33.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
32.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
32.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
32.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
32.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
31.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
31.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
31.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
31.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
31.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
31.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
31.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
30.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
30.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
30.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
30.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
30.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
30.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
30.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
30.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
30.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
29.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
29.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
29.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
29.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
28.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
28.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
28.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
28.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
28.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
28.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
27.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
27.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
27.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
27.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
26.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
26.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
26.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
26.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
26.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
25.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
25.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
25.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
25.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
24.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
24.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
24.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
24.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
24.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
24.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
24.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
23.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
23.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
23.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
23.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
23.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
23.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
22.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
22.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
22.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
22.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
22.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
22.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
22.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
22.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
21.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
21.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
21.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
21.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
21.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
21.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
21.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
21.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
20.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
20.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
20.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
20.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
20.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
20.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
20.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
19.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
19.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
19.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
19.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
18.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
18.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
17.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
17.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
17.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
17.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
17.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
17.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
17.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
16.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
16.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
16.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
16.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
16.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
16.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
16.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
16.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
16.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
16.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
16.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
16.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
16.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
16.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
15.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
15.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
15.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
15.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
15.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
15.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
15.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
15.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
15.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
14.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
14.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
14.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
14.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
14.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
14.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
13.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
13.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
13.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
13.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
13.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
13.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
13.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
13.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
13.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
13.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
13.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
12.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
12.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
12.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
12.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
12.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
12.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
12.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
12.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
12.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
12.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
12.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
11.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
11.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
11.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
11.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
11.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
10.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
10.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
10.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
10.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
10.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
10.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
10.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
9.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
9.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
9.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
9.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
9.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
9.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
9.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
8.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
8.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
8.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
7.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
7.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
5.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
4.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
4.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
3.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
3.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
3.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
3.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
3.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
3.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
2.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
2.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
2.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
2.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
2.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
2.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
1.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ERBB2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.2
Number of samples
231
Samples
Sample
Description
TPM
DO45245
0 years, female, NA, stage:2, dead, 240 days
111.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
80.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
75.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
67.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
67.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
65.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
61.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
61.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
61.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
59.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
53.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
50.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
48.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
46.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
45.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
45.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
43.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
43.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
42.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
41.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
40.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
40.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
39.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
38.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
38.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
37.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
36.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
34.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
34.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
33.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
32.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
32.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
32.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
31.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
31.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
31.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
30.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
30.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
29.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
29.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
29.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
28.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
28.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
27.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
27.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
27.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
27.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
27.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
26.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
25.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
25.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
24.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
24.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
24.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
23.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
23.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
23.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
23.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
23.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
23.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
23.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
23.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
22.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
22.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
22.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
21.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
21.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
21.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
21.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
20.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
20.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
20.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
20.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
20.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
20.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
19.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
19.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
19.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
19.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
19.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
19.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
19.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
18.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
18.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
18.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
18.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
18.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
17.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
17.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
17.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
17.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
17.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
17.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
17.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
17.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
16.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
16.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
16.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
15.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
15.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
15.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
15.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
15.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
15.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
14.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
14.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
14.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
14.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
13.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
13.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
13.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
13.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
13.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
12.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
11.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
11.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
11.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
11.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
9.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
9.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
9.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
7.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
6.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
6.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
5.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
5.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
4.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
3.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
3.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
3.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
3.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
3.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
3.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
3.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
2.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
2.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
2.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
2.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
2.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
2.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
2.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
2.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
1.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
1.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
1.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
1.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
1.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
465
Tumor
1.4
497
Tumor
1.3
423
Tumor
1.0
695
Tumor
0.9
913
Tumor
0.8
413
Tumor
0.8
285
Tumor
0.7
131
Tumor
0.6
365
Tumor
0.6
136
Normal
0.6
878
Normal
0.6
112
Tumor
0.6
824
Normal
0.5
311
Tumor
0.5
955
Tumor
0.5
114
Normal
0.5
786
Normal
0.5
648
Normal
0.5
443
Tumor
0.5
188
Normal
0.5
874
Normal
0.4
268
Normal
0.4
353
Tumor
0.4
746
Normal
0.4
272
Normal
0.4
187
Tumor
0.4
416
Normal
0.4
852
Normal
0.4
162
Normal
0.4
214
Normal
0.4
1043
Tumor
0.4
967
Tumor
0.4
452
Normal
0.4
192
Normal
0.4
364
Normal
0.4
172
Normal
0.4
362
Normal
0.4
411
Tumor
0.4
868
Normal
0.4
685
Tumor
0.4
538
Normal
0.4
498
Normal
0.3
481
Tumor
0.3
277
Tumor
0.3
356
Normal
0.3
756
Normal
0.3
965
Tumor
0.3
424
Normal
0.3
258
Normal
0.3
358
Normal
0.3
436
Normal
0.3
464
Normal
0.3
146
Normal
0.3
132
Normal
0.3
571
Tumor
0.3
445
Tumor
0.3
395
Tumor
0.3
666
Normal
0.3
455
Tumor
0.3
647
Tumor
0.3
284
Normal
0.3
222
Normal
0.3
386
Normal
0.3
1032
Normal
0.3
1028
Normal
0.3
428
Normal
0.3
1026
Normal
0.3
535
Tumor
0.3
487
Tumor
0.3
662
Normal
0.3
312
Normal
0.3
232
Normal
0.3
414
Normal
0.3
785
Tumor
0.3
858
Normal
0.3
697
Tumor
0.2
138
Normal
0.2
482
Normal
0.2
618
Normal
0.2
278
Normal
0.2
515
Tumor
0.2
444
Normal
0.2
664
Normal
0.2
472
Normal
0.2
1015
Tumor
0.2
328
Normal
0.2
462
Normal
0.2
148
Normal
0.2
196
Normal
0.2
742
Normal
0.2
224
Normal
0.2
135
Tumor
0.2
976
Normal
0.2
958
Normal
0.2
1022
Normal
0.2
394
Normal
0.2
422
Normal
0.2
714
Normal
0.2
171
Tumor
0.2
111
Normal
0.2
722
Normal
0.2
145
Tumor
0.2
642
Normal
0.2
952
Normal
0.2
778
Normal
0.2
737
Tumor
0.2
425
Tumor
0.2
456
Normal
0.2
527
Tumor
0.2
738
Normal
0.2
126
Normal
0.2
478
Normal
0.2
366
Normal
0.2
463
Tumor
0.2
186
Normal
0.2
466
Normal
0.2
468
Normal
0.2
863
Tumor
0.2
344
Normal
0.2
388
Normal
0.1
728
Normal
0.1
883
Tumor
0.1
574
Normal
0.1
228
Normal
0.1
866
Normal
0.1
916
Normal
0.1
1014
Normal
0.1
518
Normal
0.1
857
Tumor
0.1
977
Tumor
0.1
432
Normal
0.1
635
Tumor
0.1
368
Normal
0.1
412
Normal
0.1
864
Normal
0.1
392
Normal
0.1
354
Normal
0.1
431
Tumor
0.1
1046
Normal
0.1
484
Normal
0.1
262
Normal
0.1
884
Normal
0.1
672
Normal
0.1
984
Normal
0.1
716
Normal
0.1
627
Tumor
0.1
954
Normal
0.1
492
Normal
0.1
938
Normal
0.1
297
Tumor
0.1
212
Normal
0.1
446
Normal
0.1
433
Tumor
0.1
376
Normal
0.1
474
Normal
0.1
982
Normal
0.1
448
Normal
0.1
983
Tumor
0.1
755
Tumor
0.1
968
Normal
0.1
564
Normal
0.1
964
Normal
0.1
546
Normal
0.1
914
Normal
0.1
223
Tumor
0.1
286
Normal
0.1
393
Tumor
0.1
271
Tumor
0.1
572
Normal
0.1
534
Normal
0.1
357
Tumor
0.1
128
Normal
0.0
727
Tumor
0.0
421
Tumor
0.0
514
Normal
0.0
367
Tumor
0.0
352
Normal
0.0
956
Normal
0.0
477
Tumor
0.0
1042
Normal
0.0
396
Normal
0.0
267
Tumor
0.0
494
Normal
0.0
137
Tumor
0.0
554
Normal
0.0
862
Normal
0.0
966
Normal
0.0
721
Tumor
0.0
142
Normal
0.0
314
Normal
0.0
978
Normal
0.0
628
Normal
0.0
1016
Normal
0.0
1044
Normal
0.0
568
Normal
0.0
816
Normal
0.0
873
Tumor
0.0
944
Normal
0.0
981
Tumor
0.0
426
Normal
0.0
696
Normal
0.0
384
Normal
0.0
744
Normal
0.0
882
Normal
0.0
124
Normal
0.0
141
Tumor
0.0
923
Tumor
0.0
636
Normal
0.0
427
Tumor
0.0
341
Tumor
0.0
698
Normal
0.0
545
Tumor
0.0
943
Tumor
0.0
218
Normal
0.0
818
Normal
-0.1
917
Tumor
-0.1
434
Normal
-0.1
616
Normal
-0.1
558
Normal
-0.1
615
Tumor
-0.1
723
Tumor
-0.1
261
Tumor
-0.1
1045
Tumor
-0.1
686
Normal
-0.1
924
Normal
-0.1
461
Tumor
-0.1
298
Normal
-0.1
975
Tumor
-0.1
814
Normal
-0.1
516
Normal
-0.1
361
Tumor
-0.1
471
Tumor
-0.1
528
Normal
-0.1
926
Normal
-0.1
195
Tumor
-0.1
671
Tumor
-0.1
922
Normal
-0.1
813
Tumor
-0.1
355
Tumor
-0.1
342
Normal
-0.1
663
Tumor
-0.2
127
Tumor
-0.2
211
Tumor
-0.2
533
Tumor
-0.2
745
Tumor
-0.2
865
Tumor
-0.2
488
Normal
-0.2
526
Normal
-0.2
1013
Tumor
-0.2
921
Tumor
-0.2
536
Normal
-0.2
665
Tumor
-0.2
447
Tumor
-0.3
563
Tumor
-0.3
912
Normal
-0.3
513
Tumor
-0.3
113
Tumor
-0.3
385
Tumor
-0.3
221
Tumor
-0.3
918
Normal
-0.3
185
Tumor
-0.3
161
Tumor
-0.3
191
Tumor
-0.3
491
Tumor
-0.3
524
Normal
-0.3
1041
Tumor
-0.3
553
Tumor
-0.3
617
Tumor
-0.3
332
Normal
-0.3
123
Tumor
-0.3
877
Tumor
-0.3
713
Tumor
-0.3
715
Tumor
-0.3
861
Tumor
-0.3
557
Tumor
-0.3
867
Tumor
-0.3
415
Tumor
-0.4
963
Tumor
-0.4
483
Tumor
-0.4
351
Tumor
-0.4
881
Tumor
-0.4
217
Tumor
-0.4
641
Tumor
-0.4
493
Tumor
-0.4
817
Tumor
-0.5
777
Tumor
-0.5
473
Tumor
-0.5
147
Tumor
-0.5
125
Tumor
-0.5
391
Tumor
-0.5
1025
Tumor
-0.5
331
Tumor
-0.5
213
Tumor
-0.5
327
Tumor
-0.5
257
Tumor
-0.5
1031
Tumor
-0.5
383
Tumor
-0.6
915
Tumor
-0.6
823
Tumor
-0.6
851
Tumor
-0.6
743
Tumor
-0.6
375
Tumor
-0.6
435
Tumor
-0.7
1027
Tumor
-0.7
957
Tumor
-0.7
343
Tumor
-0.7
1021
Tumor
-0.7
741
Tumor
-0.7
363
Tumor
-0.7
231
Tumor
-0.7
911
Tumor
-0.8
925
Tumor
-0.8
467
Tumor
-0.8
283
Tumor
-0.8
313
Tumor
-0.8
451
Tumor
-0.8
661
Tumor
-0.9
387
Tumor
-0.9
227
Tumor
-1.0
815
Tumor
-1.0
523
Tumor
-1.0
573
Tumor
-1.0
953
Tumor
-1.0
525
Tumor
-1.1
567
Tumor
-1.1
537
Tumor
-1.1
517
Tumor
-1.2
937
Tumor
-1.2
951
Tumor
-1.3
724
Normal
-1.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
