MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.9 nTPM
HPA Brain:98.9 nTPM
GTEx:40.9 nTPM
FANTOM5:25.3 Scaled Tags Per Million
Pig:86.6 nTPM
Mouse:124.1 nTPM
Allen mouse:5.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 98.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 79.6
2019 Male, age 18, unknown 109.2
2586 Male, age 75, left hemisphere 93.1
2666 Male, age 74, left hemisphere 85.3
2828 Female, age 72, unknown 78.0
1827 Male, age 72, unknown 77.1
2411 Female, age 72, unknown 76.0
2219 Male, age 76, both hemispheres 75.6
1833 Male, age 53, unknown 72.9
1830 Male, age 51, unknown 67.0
1870 Female, age 42, unknown 61.7
Dorsal raphe nucleus
nTPM: 70.6
1828 Male, age 53, unknown 88.2
2047 Male, age 72, unknown 76.3
2750 Male, age 76, both hemispheres 73.3
2298 Female, age 72, unknown 60.9
2016 Female, age 72, unknown 54.1
Inferior colliculus
nTPM: 93.4
2097 Female, age 72, unknown 103.7
1848 Female, age 42, unknown 95.9
1890 Male, age 53, unknown 91.1
2849 Male, age 72, unknown 82.7
Median raphe nucleus
nTPM: 66.7
2220 Male, age 76, midline 66.7
Periaquaductal grey, anterior
nTPM: 73.2
2502 Female, age 75, unknown 83.4
1795 Male, age 51, unknown 71.7
1947 Male, age 18, unknown 64.6
Periaquaductal grey, dorsal
nTPM: 61.9
2464 Female, age 72, unknown 72.1
1840 Male, age 53, unknown 63.5
1831 Male, age 72, unknown 59.2
2850 Male, age 76, both hemispheres 52.7
Periaquaductal grey, lateral
nTPM: 55.5
2053 Male, age 18, unknown 60.0
2140 Male, age 76, both hemispheres 57.8
2272 Male, age 74, both hemispheres 48.7
Pretectal area
nTPM: 89.6
1816 Male, age 51, unknown 133.8
1817 Female, age 42, unknown 123.9
2007 Male, age 72, unknown 122.8
1944 Female, age 72, unknown 117.3
1815 Male, age 53, unknown 96.2
2667 Female, age 75, unknown 89.4
2316 Male, age 76, right hemisphere 70.0
2407 Male, age 75, both hemispheres 65.2
2825 Male, age 18, unknown 62.3
2224 Female, age 72, unknown 56.6
2273 Male, age 74, both hemispheres 48.1
Red nucleus
nTPM: 89.2
2588 Male, age 74, left hemisphere 105.3
2823 Male, age 76, right hemisphere 98.9
2785 Male, age 18, unknown 97.1
1821 Female, age 72, unknown 92.4
2584 Male, age 75, left hemisphere 90.2
2769 Male, age 72, unknown 89.0
2227 Male, age 72, unknown 87.7
1954 Female, age 42, unknown 84.3
2725 Female, age 75, unknown 84.3
2503 Female, age 72, unknown 83.7
1865 Male, age 51, unknown 80.1
1904 Male, age 53, unknown 77.5
Substantia nigra
nTPM: 98.9
1941 Male, age 53, unknown 125.0
1916 Female, age 42, unknown 124.3
2665 Male, age 74, both hemispheres 117.1
1889 Female, age 72, unknown 115.1
1851 Male, age 51, unknown 96.5
2241 Male, age 72, unknown 91.8
2409 Female, age 72, unknown 89.8
2590 Female, age 75, unknown 79.2
2699 Male, age 18, unknown 78.4
2583 Male, age 75, right hemisphere 72.1
Superior colliculus
nTPM: 81.9
2087 Female, age 72, unknown 124.3
1895 Male, age 76, right hemisphere 94.9
2261 Male, age 18, unknown 92.1
2664 Male, age 75, both hemispheres 87.4
2668 Female, age 75, unknown 85.7
1839 Male, age 51, unknown 73.9
1796 Male, age 53, unknown 67.9
1913 Female, age 42, unknown 65.8
1995 Male, age 72, unknown 64.2
2587 Male, age 74, left hemisphere 62.3
Ventral tegmental area
nTPM: 75.1
2410 Female, age 72, unknown 100.7
2218 Male, age 76, both hemispheres 83.7
1915 Female, age 42, unknown 80.1
1942 Male, age 51, unknown 67.1
2223 Female, age 72, unknown 61.7
2021 Male, age 53, unknown 57.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 40.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.9
Samples: 139

Max nTPM: 128.1
Min nTPM: 15.5
Std nTPM: 16.6
Median nTPM: 36.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 128.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 92.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 90.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 85.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 78.1
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 73.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 71.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 67.5
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 65.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 64.2
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 63.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 25.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 25.3
FF:10158-103A5 76 years, female 25.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 86.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 58.8
Samples: 4

Max nTPM: 81.6
Min nTPM: 35.7
Sample A Female 75.8
Sample B Female 41.9
Sample C Male 81.6
Sample D Male 35.7
Midbrain
nTPM: 76.6
Samples: 4

Max nTPM: 152.0
Min nTPM: 32.8
Sample A Female 32.8
Sample B Female 47.0
Sample C Male 152.0
Sample D Male 74.7
Periaqueductal gray
nTPM: 40.5
Samples: 3

Max nTPM: 45.1
Min nTPM: 34.8
Sample B Female 41.6
Sample C Male 45.1
Sample D Male 34.8
Superior colliculi
nTPM: 86.6
Samples: 4

Max nTPM: 138.0
Min nTPM: 57.3
Sample A Female 65.8
Sample B Female 57.3
Sample C Male 138.0
Sample D Male 85.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 124.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 124.2
Samples: 4

Max nTPM: 137.6
Min nTPM: 111.4
Sample A Male 111.4
Sample B Male 121.6
Sample C Female 137.6
Sample D Female 126.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.4
74562224 Antisense, RP_060208_02_E01, Mouse strain C57BL/6J (56 days, male) 5.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org