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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CSNK1D is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
29.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
118.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
86.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
81.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
75.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
74.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
73.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
72.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
70.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
69.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
67.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
67.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
64.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
63.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
62.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
61.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
61.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
60.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
59.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
57.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
57.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
55.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
54.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
52.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
52.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
52.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
51.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
51.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
51.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
50.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
50.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
50.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
49.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
49.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
49.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
49.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
49.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
49.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
49.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
48.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
48.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
48.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
48.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
48.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
47.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
46.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
46.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
45.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
45.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
45.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
44.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
44.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
44.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
43.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
43.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
43.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
43.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
43.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
43.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
42.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
42.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
42.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
41.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
41.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
41.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
41.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
41.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
41.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
41.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
40.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
40.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
40.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
40.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
40.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
40.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
40.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
39.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
39.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
38.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
38.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
38.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
38.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
38.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
38.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
38.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
38.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
37.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
37.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
37.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
36.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
36.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
36.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
36.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
36.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
36.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
35.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
35.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
35.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
35.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
35.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
35.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
35.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
34.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
34.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
34.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
34.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
34.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
34.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
34.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
34.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
34.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
33.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
33.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
33.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
33.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
33.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
33.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
33.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
33.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
33.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
33.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
33.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
32.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
32.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
32.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
32.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
32.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
32.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
31.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
31.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
31.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
31.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
31.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
31.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
31.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
31.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
30.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
30.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
30.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
30.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
30.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
30.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
30.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
30.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
29.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
29.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
29.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
29.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
29.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
29.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
29.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
29.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
29.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
29.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
29.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
28.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
28.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
28.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
28.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
28.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
28.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
28.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
28.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
28.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
28.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
28.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
28.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
28.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
27.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
27.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
27.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
27.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
27.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
27.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
27.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
27.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
27.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
27.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
27.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
27.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
26.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
26.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
26.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
26.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
26.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
26.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
26.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
26.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
26.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
26.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
26.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
26.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
26.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
26.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
26.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
26.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
25.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
25.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
25.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
25.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
25.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
25.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
25.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
25.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
25.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
25.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
25.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
24.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
24.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
24.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
24.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
24.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
24.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
24.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
24.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
24.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
24.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
24.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
24.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
24.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
23.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
23.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
23.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
23.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
23.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
23.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
23.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
23.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
23.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
23.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
22.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
22.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
22.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
22.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
22.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
22.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
22.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
22.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
22.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
22.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
22.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
21.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
21.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
21.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
21.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
21.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
21.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
21.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
21.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
21.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
21.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
21.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
21.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
20.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
20.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
20.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
20.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
20.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
20.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
20.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
19.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
19.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
19.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
19.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
19.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
19.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
19.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
19.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
18.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
18.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
18.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
18.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
18.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
18.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
18.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
18.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
18.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
18.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
18.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
18.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
17.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
17.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
17.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
17.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
17.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
17.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
17.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
17.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
17.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
17.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
16.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
16.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
16.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
16.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
16.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
16.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
16.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
16.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
15.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
15.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
15.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
15.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
15.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
15.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
15.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
15.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
15.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
15.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
15.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
15.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
14.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
14.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
14.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
14.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
14.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
14.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
14.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
14.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
14.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
13.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
13.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
13.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
13.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
13.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
13.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
13.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
13.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
12.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
12.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
11.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
11.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
11.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
11.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
11.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
11.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
11.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
11.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
11.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
11.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
10.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
10.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
9.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
8.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
8.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CSNK1D is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
32.5
Number of samples
231
Samples
Sample
Description
TPM
DO45185
0 years, male, NA, stage:2, alive, 600 days
74.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
73.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
73.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
72.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
71.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
65.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
64.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
64.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
63.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
62.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
62.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
61.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
59.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
59.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
59.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
59.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
58.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
55.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
54.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
53.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
52.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
52.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
52.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
51.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
50.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
49.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
48.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
48.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
48.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
47.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
47.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
47.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
47.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
46.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
46.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
46.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
45.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
45.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
45.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
44.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
43.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
43.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
43.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
43.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
43.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
43.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
42.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
42.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
42.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
42.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
41.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
41.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
41.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
40.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
39.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
39.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
39.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
39.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
38.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
38.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
38.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
38.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
38.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
37.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
37.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
37.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
36.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
36.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
36.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
36.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
36.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
36.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
35.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
35.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
35.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
35.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
35.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
34.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
34.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
34.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
33.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
33.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
33.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
33.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
33.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
33.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
33.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
33.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
33.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
33.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
32.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
32.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
32.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
32.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
32.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
32.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
32.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
31.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
31.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
31.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
31.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
31.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
31.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
31.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
31.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
31.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
30.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
30.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
30.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
30.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
30.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
30.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
30.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
30.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
30.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
30.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
30.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
29.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
29.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
29.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
29.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
29.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
28.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
28.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
28.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
28.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
28.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
28.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
27.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
27.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
27.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
27.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
27.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
27.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
27.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
27.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
26.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
26.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
26.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
26.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
26.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
26.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
26.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
26.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
26.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
26.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
26.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
25.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
25.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
25.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
25.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
25.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
25.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
25.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
25.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
25.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
24.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
24.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
24.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
24.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
24.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
24.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
24.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
23.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
23.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
23.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
23.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
23.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
23.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
23.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
23.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
23.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
23.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
22.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
22.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
22.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
22.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
22.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
22.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
22.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
22.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
22.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
22.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
21.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
21.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
21.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
21.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
20.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
20.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
20.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
20.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
20.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
20.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
20.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
20.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
20.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
20.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
19.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
19.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
19.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
19.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
18.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
18.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
18.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
18.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
18.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
18.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
17.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
17.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
17.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
17.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
17.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
17.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
17.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
17.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
17.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
17.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
16.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
16.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
16.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
16.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
15.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
15.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
14.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
14.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
14.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
13.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
10.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
533
Tumor
1.4
913
Tumor
0.7
123
Tumor
0.7
145
Tumor
0.7
487
Tumor
0.6
635
Tumor
0.6
267
Tumor
0.6
427
Tumor
0.5
375
Tumor
0.5
443
Tumor
0.5
433
Tumor
0.4
257
Tumor
0.4
957
Tumor
0.4
367
Tumor
0.4
953
Tumor
0.4
951
Tumor
0.4
647
Tumor
0.4
965
Tumor
0.4
777
Tumor
0.4
641
Tumor
0.4
187
Tumor
0.4
911
Tumor
0.3
937
Tumor
0.3
671
Tumor
0.3
435
Tumor
0.3
135
Tumor
0.3
285
Tumor
0.3
395
Tumor
0.3
817
Tumor
0.3
137
Tumor
0.3
663
Tumor
0.3
527
Tumor
0.3
313
Tumor
0.3
297
Tumor
0.3
477
Tumor
0.3
351
Tumor
0.3
271
Tumor
0.3
112
Tumor
0.3
537
Tumor
0.3
873
Tumor
0.3
743
Tumor
0.3
865
Tumor
0.2
147
Tumor
0.2
341
Tumor
0.2
981
Tumor
0.2
557
Tumor
0.2
535
Tumor
0.2
423
Tumor
0.2
661
Tumor
0.2
467
Tumor
0.2
545
Tumor
0.2
331
Tumor
0.2
851
Tumor
0.2
311
Tumor
0.2
1041
Tumor
0.2
385
Tumor
0.2
573
Tumor
0.2
113
Tumor
0.2
463
Tumor
0.2
277
Tumor
0.2
923
Tumor
0.2
127
Tumor
0.2
497
Tumor
0.2
161
Tumor
0.2
883
Tumor
0.2
1027
Tumor
0.2
185
Tumor
0.2
231
Tumor
0.2
925
Tumor
0.2
114
Normal
0.2
525
Tumor
0.2
171
Tumor
0.1
221
Tumor
0.1
141
Tumor
0.1
697
Tumor
0.1
1021
Tumor
0.1
283
Tumor
0.1
222
Normal
0.1
1025
Tumor
0.1
425
Tumor
0.1
357
Tumor
0.1
815
Tumor
0.1
471
Tumor
0.1
411
Tumor
0.1
1015
Tumor
0.1
186
Normal
0.1
447
Tumor
0.1
465
Tumor
0.1
131
Tumor
0.1
125
Tumor
0.1
737
Tumor
0.1
172
Normal
0.1
665
Tumor
0.1
863
Tumor
0.1
1045
Tumor
0.1
745
Tumor
0.1
394
Normal
0.1
983
Tumor
0.1
1031
Tumor
0.1
355
Tumor
0.1
975
Tumor
0.1
111
Normal
0.1
391
Tumor
0.1
217
Tumor
0.1
921
Tumor
0.1
431
Tumor
0.1
352
Normal
0.1
342
Normal
0.1
396
Normal
0.1
877
Tumor
0.1
715
Tumor
0.1
191
Tumor
0.1
421
Tumor
0.1
327
Tumor
0.1
857
Tumor
0.1
162
Normal
0.1
982
Normal
0.1
211
Tumor
0.1
473
Tumor
0.1
353
Tumor
0.1
358
Normal
0.1
393
Tumor
0.0
455
Tumor
0.0
461
Tumor
0.0
695
Tumor
0.0
456
Normal
0.0
648
Normal
0.0
967
Tumor
0.0
392
Normal
0.0
286
Normal
0.0
1016
Normal
0.0
148
Normal
0.0
128
Normal
0.0
451
Tumor
0.0
344
Normal
0.0
977
Tumor
0.0
534
Normal
0.0
755
Tumor
0.0
515
Tumor
0.0
513
Tumor
0.0
383
Tumor
0.0
666
Normal
0.0
664
Normal
0.0
814
Normal
0.0
284
Normal
0.0
361
Tumor
0.0
268
Normal
0.0
727
Tumor
0.0
746
Normal
0.0
343
Tumor
0.0
188
Normal
0.0
528
Normal
0.0
523
Tumor
0.0
445
Tumor
0.0
813
Tumor
0.0
881
Tumor
0.0
627
Tumor
0.0
517
Tumor
0.0
567
Tumor
0.0
218
Normal
0.0
388
Normal
0.0
365
Tumor
0.0
1028
Normal
0.0
955
Tumor
0.0
386
Normal
0.0
571
Tumor
0.0
884
Normal
0.0
943
Tumor
0.0
228
Normal
0.0
917
Tumor
0.0
618
Normal
0.0
124
Normal
0.0
786
Normal
0.0
553
Tumor
0.0
491
Tumor
0.0
464
Normal
0.0
413
Tumor
0.0
354
Normal
0.0
434
Normal
0.0
214
Normal
0.0
563
Tumor
0.0
195
Tumor
0.0
616
Normal
0.0
213
Tumor
0.0
558
Normal
0.0
915
Tumor
0.0
126
Normal
0.0
416
Normal
0.0
493
Tumor
0.0
328
Normal
0.0
436
Normal
0.0
968
Normal
0.0
192
Normal
0.0
662
Normal
-0.1
824
Normal
-0.1
132
Normal
-0.1
966
Normal
-0.1
387
Tumor
-0.1
196
Normal
-0.1
424
Normal
-0.1
212
Normal
-0.1
564
Normal
-0.1
723
Tumor
-0.1
446
Normal
-0.1
568
Normal
-0.1
227
Tumor
-0.1
858
Normal
-0.1
546
Normal
-0.1
636
Normal
-0.1
444
Normal
-0.1
778
Normal
-0.1
882
Normal
-0.1
272
Normal
-0.1
574
Normal
-0.1
258
Normal
-0.1
615
Tumor
-0.1
223
Tumor
-0.1
412
Normal
-0.1
483
Tumor
-0.1
422
Normal
-0.1
426
Normal
-0.1
728
Normal
-0.1
818
Normal
-0.1
462
Normal
-0.1
976
Normal
-0.1
628
Normal
-0.1
452
Normal
-0.1
362
Normal
-0.1
1026
Normal
-0.1
415
Tumor
-0.1
261
Tumor
-0.1
867
Tumor
-0.1
262
Normal
-0.1
878
Normal
-0.1
1046
Normal
-0.1
554
Normal
-0.1
742
Normal
-0.1
642
Normal
-0.1
482
Normal
-0.1
952
Normal
-0.1
984
Normal
-0.1
428
Normal
-0.1
136
Normal
-0.1
912
Normal
-0.1
364
Normal
-0.1
823
Tumor
-0.1
964
Normal
-0.1
617
Tumor
-0.1
498
Normal
-0.1
816
Normal
-0.1
756
Normal
-0.1
536
Normal
-0.1
356
Normal
-0.1
1013
Tumor
-0.1
484
Normal
-0.1
278
Normal
-0.1
862
Normal
-0.1
785
Tumor
-0.1
474
Normal
-0.1
138
Normal
-0.1
572
Normal
-0.1
1042
Normal
-0.1
472
Normal
-0.1
672
Normal
-0.1
481
Tumor
-0.1
526
Normal
-0.1
488
Normal
-0.1
861
Tumor
-0.1
146
Normal
-0.1
741
Tumor
-0.1
922
Normal
-0.1
492
Normal
-0.1
1014
Normal
-0.1
852
Normal
-0.1
874
Normal
-0.1
448
Normal
-0.1
224
Normal
-0.2
376
Normal
-0.2
1043
Tumor
-0.2
468
Normal
-0.2
384
Normal
-0.2
866
Normal
-0.2
414
Normal
-0.2
724
Normal
-0.2
1044
Normal
-0.2
142
Normal
-0.2
514
Normal
-0.2
698
Normal
-0.2
924
Normal
-0.2
958
Normal
-0.2
963
Tumor
-0.2
864
Normal
-0.2
916
Normal
-0.2
298
Normal
-0.2
722
Normal
-0.2
232
Normal
-0.2
956
Normal
-0.2
954
Normal
-0.2
713
Tumor
-0.2
918
Normal
-0.2
494
Normal
-0.2
478
Normal
-0.2
744
Normal
-0.2
538
Normal
-0.2
363
Tumor
-0.2
368
Normal
-0.2
432
Normal
-0.2
466
Normal
-0.2
685
Tumor
-0.2
524
Normal
-0.2
926
Normal
-0.2
978
Normal
-0.2
714
Normal
-0.2
312
Normal
-0.2
914
Normal
-0.2
366
Normal
-0.2
944
Normal
-0.2
518
Normal
-0.2
738
Normal
-0.2
686
Normal
-0.2
516
Normal
-0.2
938
Normal
-0.3
1032
Normal
-0.3
716
Normal
-0.3
314
Normal
-0.3
696
Normal
-0.3
332
Normal
-0.3
1022
Normal
-0.3
721
Tumor
-0.3
868
Normal
-0.3
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
