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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ASGR1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
419.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1555.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
1283.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
1119.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
1084.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1081.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1068.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1048.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1020.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
985.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
972.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
971.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
951.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
921.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
875.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
871.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
871.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
867.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
855.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
852.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
850.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
844.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
834.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
833.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
828.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
826.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
819.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
811.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
802.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
800.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
796.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
794.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
790.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
786.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
782.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
781.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
779.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
776.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
767.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
762.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
757.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
754.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
744.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
742.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
741.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
739.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
730.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
721.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
720.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
705.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
701.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
700.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
690.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
686.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
684.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
665.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
664.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
656.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
656.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
650.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
641.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
640.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
639.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
639.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
638.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
634.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
634.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
628.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
620.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
620.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
616.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
613.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
613.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
607.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
606.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
604.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
588.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
587.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
584.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
579.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
577.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
576.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
573.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
572.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
565.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
563.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
558.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
557.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
550.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
541.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
538.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
538.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
536.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
536.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
536.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
535.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
533.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
524.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
524.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
520.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
520.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
515.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
515.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
515.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
511.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
505.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
494.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
494.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
489.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
488.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
488.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
487.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
481.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
481.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
481.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
477.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
469.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
468.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
466.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
466.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
465.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
461.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
454.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
453.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
449.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
447.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
447.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
446.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
442.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
441.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
441.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
439.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
437.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
437.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
433.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
430.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
430.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
428.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
426.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
425.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
425.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
424.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
417.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
415.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
413.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
413.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
410.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
406.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
403.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
402.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
399.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
399.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
398.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
397.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
396.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
392.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
392.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
388.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
388.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
387.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
386.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
385.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
382.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
382.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
382.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
381.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
380.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
380.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
376.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
374.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
374.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
374.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
374.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
373.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
373.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
371.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
369.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
365.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
365.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
362.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
362.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
360.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
360.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
359.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
357.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
356.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
354.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
352.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
349.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
348.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
348.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
348.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
347.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
346.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
345.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
344.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
343.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
341.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
340.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
339.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
338.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
338.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
338.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
336.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
336.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
336.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
335.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
332.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
332.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
332.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
331.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
330.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
329.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
329.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
328.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
328.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
328.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
326.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
324.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
323.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
323.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
323.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
322.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
321.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
320.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
320.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
318.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
318.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
318.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
313.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
310.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
309.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
308.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
308.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
304.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
304.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
304.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
302.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
300.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
299.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
299.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
298.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
297.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
296.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
296.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
295.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
292.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
291.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
291.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
291.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
290.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
289.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
288.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
285.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
282.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
282.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
282.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
281.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
281.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
279.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
278.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
278.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
276.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
276.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
276.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
275.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
274.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
274.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
273.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
271.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
270.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
270.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
269.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
269.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
268.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
267.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
265.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
264.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
262.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
261.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
261.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
261.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
253.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
252.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
251.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
249.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
249.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
248.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
247.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
244.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
243.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
242.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
241.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
241.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
240.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
239.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
239.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
238.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
237.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
236.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
234.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
232.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
232.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
231.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
231.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
230.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
230.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
228.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
227.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
226.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
225.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
224.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
221.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
220.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
218.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
217.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
215.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
212.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
212.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
208.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
203.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
199.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
199.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
197.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
195.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
194.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
185.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
183.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
177.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
175.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
171.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
167.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
164.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
162.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
159.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
154.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
151.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
133.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
128.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
121.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
120.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
111.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
110.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
101.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
95.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
73.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
68.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
67.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
66.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
55.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
44.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
42.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
32.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
25.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
16.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
5.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
4.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
4.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
2.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ASGR1 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
258.3
Number of samples
231
Samples
Sample
Description
TPM
DO50845
0 years, male, NA, stage:3, alive, 210 days
903.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
827.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
773.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
752.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
723.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
718.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
675.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
669.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
657.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
642.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
622.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
607.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
600.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
597.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
594.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
591.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
591.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
583.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
568.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
559.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
547.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
546.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
518.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
510.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
506.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
506.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
492.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
490.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
488.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
486.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
484.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
481.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
466.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
463.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
462.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
459.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
456.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
456.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
450.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
447.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
413.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
405.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
400.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
395.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
388.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
383.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
379.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
374.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
368.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
364.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
362.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
360.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
359.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
354.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
342.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
338.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
338.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
335.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
335.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
334.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
334.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
333.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
329.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
328.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
323.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
318.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
318.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
311.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
310.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
310.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
301.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
298.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
291.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
291.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
287.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
286.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
285.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
283.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
282.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
282.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
281.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
278.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
275.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
275.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
274.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
269.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
269.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
268.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
266.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
266.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
266.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
264.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
258.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
256.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
255.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
251.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
250.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
246.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
245.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
243.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
241.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
239.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
238.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
235.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
234.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
231.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
231.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
231.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
229.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
229.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
224.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
223.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
220.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
219.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
219.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
218.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
212.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
208.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
207.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
205.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
204.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
203.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
201.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
201.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
199.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
199.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
193.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
193.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
189.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
188.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
187.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
186.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
186.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
185.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
185.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
181.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
180.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
179.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
179.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
178.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
177.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
177.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
176.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
176.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
175.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
174.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
172.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
170.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
169.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
168.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
168.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
168.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
168.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
167.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
167.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
164.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
161.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
160.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
159.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
158.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
155.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
154.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
154.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
153.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
152.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
151.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
150.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
149.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
146.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
146.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
145.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
144.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
144.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
143.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
142.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
140.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
138.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
135.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
131.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
131.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
129.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
129.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
127.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
126.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
125.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
123.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
121.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
121.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
117.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
116.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
113.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
109.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
109.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
108.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
108.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
107.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
103.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
101.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
96.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
94.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
86.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
84.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
80.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
76.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
76.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
75.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
69.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
67.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
60.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
56.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
56.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
53.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
50.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
49.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
41.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
33.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
18.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
17.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
13.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
8.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
4.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
4.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
3.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
3.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
2.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
1.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
425
Tumor
1.4
937
Tumor
1.2
618
Normal
1.0
721
Tumor
0.9
131
Tumor
0.9
1031
Tumor
0.9
746
Normal
0.9
463
Tumor
0.8
285
Tumor
0.8
426
Normal
0.7
123
Tumor
0.7
636
Normal
0.7
648
Normal
0.7
452
Normal
0.7
186
Normal
0.7
472
Normal
0.7
955
Tumor
0.7
664
Normal
0.7
568
Normal
0.7
332
Normal
0.6
918
Normal
0.6
218
Normal
0.6
924
Normal
0.6
1028
Normal
0.6
813
Tumor
0.6
628
Normal
0.6
436
Normal
0.6
977
Tumor
0.6
342
Normal
0.6
222
Normal
0.6
938
Normal
0.6
356
Normal
0.6
358
Normal
0.6
414
Normal
0.6
196
Normal
0.6
723
Tumor
0.6
738
Normal
0.6
128
Normal
0.6
686
Normal
0.6
967
Tumor
0.6
858
Normal
0.6
553
Tumor
0.6
422
Normal
0.6
223
Tumor
0.6
778
Normal
0.6
742
Normal
0.6
258
Normal
0.6
558
Normal
0.6
737
Tumor
0.6
815
Tumor
0.6
922
Normal
0.6
132
Normal
0.6
554
Normal
0.6
952
Normal
0.5
616
Normal
0.5
564
Normal
0.5
286
Normal
0.5
865
Tumor
0.5
968
Normal
0.5
1025
Tumor
0.5
824
Normal
0.5
278
Normal
0.5
1016
Normal
0.5
862
Normal
0.5
526
Normal
0.5
368
Normal
0.5
484
Normal
0.5
388
Normal
0.5
474
Normal
0.5
523
Tumor
0.5
1032
Normal
0.5
912
Normal
0.5
864
Normal
0.5
376
Normal
0.5
966
Normal
0.5
981
Tumor
0.5
271
Tumor
0.5
698
Normal
0.5
221
Tumor
0.5
396
Normal
0.5
1043
Tumor
0.5
868
Normal
0.5
466
Normal
0.4
111
Normal
0.4
878
Normal
0.4
114
Normal
0.4
666
Normal
0.4
662
Normal
0.4
665
Tumor
0.4
715
Tumor
0.4
494
Normal
0.4
462
Normal
0.4
428
Normal
0.4
975
Tumor
0.4
1022
Normal
0.4
745
Tumor
0.4
446
Normal
0.4
482
Normal
0.4
497
Tumor
0.4
944
Normal
0.4
964
Normal
0.4
471
Tumor
0.4
227
Tumor
0.4
214
Normal
0.4
642
Normal
0.4
124
Normal
0.4
314
Normal
0.4
915
Tumor
0.4
362
Normal
0.4
866
Normal
0.4
863
Tumor
0.4
1026
Normal
0.4
518
Normal
0.4
464
Normal
0.4
572
Normal
0.4
851
Tumor
0.4
136
Normal
0.4
432
Normal
0.4
514
Normal
0.4
635
Tumor
0.4
672
Normal
0.4
424
Normal
0.4
515
Tumor
0.4
142
Normal
0.4
138
Normal
0.3
728
Normal
0.3
488
Normal
0.3
921
Tumor
0.3
534
Normal
0.3
546
Normal
0.3
298
Normal
0.3
873
Tumor
0.3
983
Tumor
0.3
818
Normal
0.3
884
Normal
0.3
696
Normal
0.3
877
Tumor
0.3
574
Normal
0.3
617
Tumor
0.3
1042
Normal
0.3
722
Normal
0.3
517
Tumor
0.3
148
Normal
0.3
468
Normal
0.3
714
Normal
0.3
984
Normal
0.3
852
Normal
0.3
448
Normal
0.3
713
Tumor
0.3
272
Normal
0.3
956
Normal
0.3
527
Tumor
0.3
126
Normal
0.3
1046
Normal
0.3
916
Normal
0.3
1021
Tumor
0.3
392
Normal
0.3
816
Normal
0.3
1014
Normal
0.3
363
Tumor
0.3
412
Normal
0.3
228
Normal
0.3
716
Normal
0.3
394
Normal
0.2
328
Normal
0.2
524
Normal
0.2
958
Normal
0.2
456
Normal
0.2
957
Tumor
0.2
647
Tumor
0.2
641
Tumor
0.2
1044
Normal
0.2
982
Normal
0.2
926
Normal
0.2
743
Tumor
0.2
212
Normal
0.2
354
Normal
0.2
443
Tumor
0.2
112
Tumor
0.2
284
Normal
0.2
191
Tumor
0.2
312
Normal
0.2
492
Normal
0.2
232
Normal
0.2
528
Normal
0.2
786
Normal
0.2
344
Normal
0.2
431
Tumor
0.2
366
Normal
0.2
744
Normal
0.2
162
Normal
0.2
352
Normal
0.2
413
Tumor
0.2
538
Normal
0.2
435
Tumor
0.2
516
Normal
0.2
963
Tumor
0.2
261
Tumor
0.1
187
Tumor
0.1
882
Normal
0.1
386
Normal
0.1
914
Normal
0.1
861
Tumor
0.1
364
Normal
0.1
172
Normal
0.1
416
Normal
0.1
262
Normal
0.1
353
Tumor
0.1
268
Normal
0.1
874
Normal
0.1
341
Tumor
0.1
976
Normal
0.1
113
Tumor
0.1
965
Tumor
0.1
433
Tumor
0.1
685
Tumor
0.0
277
Tumor
0.0
481
Tumor
0.0
756
Normal
0.0
387
Tumor
0.0
777
Tumor
0.0
411
Tumor
0.0
954
Normal
0.0
951
Tumor
0.0
188
Normal
0.0
217
Tumor
0.0
147
Tumor
0.0
434
Normal
0.0
755
Tumor
0.0
477
Tumor
0.0
444
Normal
0.0
135
Tumor
0.0
536
Normal
0.0
365
Tumor
0.0
978
Normal
-0.1
823
Tumor
-0.1
814
Normal
-0.1
145
Tumor
-0.1
146
Normal
-0.1
557
Tumor
-0.1
881
Tumor
-0.1
421
Tumor
-0.1
627
Tumor
-0.1
545
Tumor
-0.1
447
Tumor
-0.1
487
Tumor
-0.1
384
Normal
-0.1
331
Tumor
-0.2
465
Tumor
-0.2
911
Tumor
-0.2
467
Tumor
-0.2
478
Normal
-0.2
451
Tumor
-0.2
785
Tumor
-0.2
567
Tumor
-0.2
171
Tumor
-0.2
817
Tumor
-0.2
423
Tumor
-0.2
415
Tumor
-0.2
393
Tumor
-0.2
923
Tumor
-0.2
383
Tumor
-0.3
695
Tumor
-0.3
741
Tumor
-0.3
615
Tumor
-0.3
224
Normal
-0.3
697
Tumor
-0.3
195
Tumor
-0.3
563
Tumor
-0.4
483
Tumor
-0.4
493
Tumor
-0.4
192
Normal
-0.4
671
Tumor
-0.4
857
Tumor
-0.4
327
Tumor
-0.4
127
Tumor
-0.4
883
Tumor
-0.4
297
Tumor
-0.4
867
Tumor
-0.4
513
Tumor
-0.4
533
Tumor
-0.4
185
Tumor
-0.4
1041
Tumor
-0.4
498
Normal
-0.4
571
Tumor
-0.4
445
Tumor
-0.4
213
Tumor
-0.4
351
Tumor
-0.5
361
Tumor
-0.5
231
Tumor
-0.5
257
Tumor
-0.5
1045
Tumor
-0.5
137
Tumor
-0.5
461
Tumor
-0.5
525
Tumor
-0.5
455
Tumor
-0.5
355
Tumor
-0.6
141
Tumor
-0.6
1015
Tumor
-0.6
661
Tumor
-0.6
473
Tumor
-0.6
537
Tumor
-0.6
343
Tumor
-0.6
267
Tumor
-0.6
535
Tumor
-0.6
943
Tumor
-0.7
913
Tumor
-0.7
357
Tumor
-0.7
391
Tumor
-0.7
1013
Tumor
-0.7
573
Tumor
-0.8
925
Tumor
-0.8
367
Tumor
-0.8
313
Tumor
-0.9
917
Tumor
-0.9
1027
Tumor
-0.9
727
Tumor
-1.0
491
Tumor
-1.0
663
Tumor
-1.0
161
Tumor
-1.0
395
Tumor
-1.0
125
Tumor
-1.0
724
Normal
-1.1
427
Tumor
-1.3
385
Tumor
-1.3
311
Tumor
-1.3
375
Tumor
-1.5
953
Tumor
-1.5
283
Tumor
-1.6
211
Tumor
-1.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.