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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MINK1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
48.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
45.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
28.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
25.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
24.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
24.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
23.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
22.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
22.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
21.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
20.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
20.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
20.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
20.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
20.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
19.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
19.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
19.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
19.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
19.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
19.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
19.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
18.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
18.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
17.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
17.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
17.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
17.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
16.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
16.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
16.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
15.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
15.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
14.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
14.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
13.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
13.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
13.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
13.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
13.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
12.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
12.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
11.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
11.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
11.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
11.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
11.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
11.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
11.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
10.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
10.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
9.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
9.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
9.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
9.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
9.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
8.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
8.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
8.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
8.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
7.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
7.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
7.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
6.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
5.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
5.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
4.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
3.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
3.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
3.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
3.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
3.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
3.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
2.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
2.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
2.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MINK1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.6
Number of samples
231
Samples
Sample
Description
TPM
DO45305
0 years, male, NA, stage:4, alive, 300 days
71.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
57.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
43.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
43.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
42.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
39.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
35.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
35.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
33.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
32.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
31.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
29.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
27.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
26.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
26.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
25.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
25.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
24.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
24.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
22.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
22.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
22.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
22.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
22.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
21.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
21.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
21.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
20.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
20.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
20.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
20.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
19.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
19.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
19.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
19.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
19.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
19.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
19.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
19.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
18.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
18.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
18.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
18.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
17.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
17.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
17.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
17.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
17.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
16.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
16.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
16.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
16.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
16.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
16.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
16.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
16.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
15.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
15.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
15.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
15.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
15.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
15.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
14.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
14.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
14.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
14.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
14.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
14.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
14.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
14.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
14.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
14.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
14.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
14.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
13.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
13.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
13.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
13.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
13.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
13.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
13.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
13.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
13.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
12.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
12.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
12.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
12.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
12.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
12.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
12.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
12.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
12.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
12.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
11.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
11.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
11.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
11.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
11.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
11.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
10.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
10.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
10.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
10.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
9.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
9.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
9.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
8.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
8.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
8.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
8.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
7.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
7.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
943
Tumor
0.8
327
Tumor
0.6
863
Tumor
0.6
981
Tumor
0.6
524
Normal
0.6
1043
Tumor
0.6
937
Tumor
0.5
951
Tumor
0.5
975
Tumor
0.5
877
Tumor
0.5
447
Tumor
0.5
536
Normal
0.5
513
Tumor
0.5
516
Normal
0.5
955
Tumor
0.5
545
Tumor
0.5
285
Tumor
0.5
192
Normal
0.5
416
Normal
0.5
958
Normal
0.5
954
Normal
0.4
526
Normal
0.4
814
Normal
0.4
554
Normal
0.4
944
Normal
0.4
755
Tumor
0.4
743
Tumor
0.4
1042
Normal
0.4
967
Tumor
0.4
956
Normal
0.4
918
Normal
0.4
142
Normal
0.4
737
Tumor
0.4
742
Normal
0.4
881
Tumor
0.4
538
Normal
0.4
518
Normal
0.4
874
Normal
0.4
131
Tumor
0.4
926
Normal
0.4
1028
Normal
0.4
744
Normal
0.4
455
Tumor
0.4
1022
Normal
0.3
916
Normal
0.3
298
Normal
0.3
211
Tumor
0.3
1045
Tumor
0.3
813
Tumor
0.3
478
Normal
0.3
1026
Normal
0.3
864
Normal
0.3
868
Normal
0.3
952
Normal
0.3
284
Normal
0.3
884
Normal
0.3
922
Normal
0.3
386
Normal
0.3
368
Normal
0.3
492
Normal
0.3
1016
Normal
0.3
488
Normal
0.3
648
Normal
0.3
473
Tumor
0.3
713
Tumor
0.3
964
Normal
0.3
968
Normal
0.3
1031
Tumor
0.3
1032
Normal
0.3
728
Normal
0.3
188
Normal
0.3
484
Normal
0.3
965
Tumor
0.3
917
Tumor
0.3
852
Normal
0.3
1046
Normal
0.3
224
Normal
0.3
756
Normal
0.3
984
Normal
0.3
924
Normal
0.3
697
Tumor
0.3
817
Tumor
0.3
1044
Normal
0.3
662
Normal
0.3
498
Normal
0.3
558
Normal
0.3
514
Normal
0.3
141
Tumor
0.3
474
Normal
0.3
778
Normal
0.3
746
Normal
0.3
966
Normal
0.3
1014
Normal
0.3
978
Normal
0.3
862
Normal
0.3
823
Tumor
0.3
976
Normal
0.3
982
Normal
0.2
878
Normal
0.2
232
Normal
0.2
415
Tumor
0.2
818
Normal
0.2
494
Normal
0.2
938
Normal
0.2
738
Normal
0.2
866
Normal
0.2
328
Normal
0.2
456
Normal
0.2
228
Normal
0.2
132
Normal
0.2
146
Normal
0.2
786
Normal
0.2
311
Tumor
0.2
723
Tumor
0.2
664
Normal
0.2
672
Normal
0.2
572
Normal
0.2
858
Normal
0.2
448
Normal
0.2
816
Normal
0.2
162
Normal
0.2
882
Normal
0.2
286
Normal
0.2
671
Tumor
0.2
272
Normal
0.2
546
Normal
0.2
227
Tumor
0.2
666
Normal
0.2
278
Normal
0.2
533
Tumor
0.2
574
Normal
0.2
912
Normal
0.2
214
Normal
0.2
343
Tumor
0.2
412
Normal
0.2
218
Normal
0.2
824
Normal
0.2
698
Normal
0.2
534
Normal
0.2
136
Normal
0.2
452
Normal
0.2
472
Normal
0.2
212
Normal
0.2
777
Tumor
0.2
977
Tumor
0.2
126
Normal
0.2
481
Tumor
0.2
914
Normal
0.2
376
Normal
0.2
421
Tumor
0.2
716
Normal
0.2
857
Tumor
0.2
696
Normal
0.2
491
Tumor
0.2
312
Normal
0.2
463
Tumor
0.2
528
Normal
0.2
384
Normal
0.2
564
Normal
0.2
714
Normal
0.2
745
Tumor
0.2
196
Normal
0.2
138
Normal
0.2
617
Tumor
0.2
331
Tumor
0.2
314
Normal
0.2
283
Tumor
0.2
1015
Tumor
0.2
722
Normal
0.1
721
Tumor
0.1
392
Normal
0.1
364
Normal
0.1
444
Normal
0.1
396
Normal
0.1
462
Normal
0.1
913
Tumor
0.1
366
Normal
0.1
145
Tumor
0.1
258
Normal
0.1
915
Tumor
0.1
921
Tumor
0.1
365
Tumor
0.1
262
Normal
0.1
641
Tumor
0.1
468
Normal
0.1
268
Normal
0.1
686
Normal
0.1
297
Tumor
0.1
563
Tumor
0.1
963
Tumor
0.1
344
Normal
0.1
482
Normal
0.1
352
Normal
0.1
223
Tumor
0.1
451
Tumor
0.1
221
Tumor
0.1
461
Tumor
0.1
313
Tumor
0.1
147
Tumor
0.1
471
Tumor
0.1
616
Normal
0.1
432
Normal
0.1
428
Normal
0.1
446
Normal
0.1
342
Normal
0.1
436
Normal
0.1
363
Tumor
0.1
222
Normal
0.1
394
Normal
0.1
195
Tumor
0.1
148
Normal
0.1
434
Normal
0.1
525
Tumor
0.1
464
Normal
0.1
362
Normal
0.1
332
Normal
0.1
467
Tumor
0.1
527
Tumor
0.1
128
Normal
0.1
553
Tumor
0.1
414
Normal
0.1
388
Normal
0.1
356
Normal
0.1
375
Tumor
0.1
515
Tumor
0.1
1025
Tumor
0.1
1041
Tumor
0.1
191
Tumor
0.0
213
Tumor
0.0
354
Normal
0.0
911
Tumor
0.0
385
Tumor
0.0
261
Tumor
0.0
568
Normal
0.0
427
Tumor
0.0
715
Tumor
0.0
867
Tumor
0.0
124
Normal
0.0
424
Normal
0.0
618
Normal
0.0
628
Normal
0.0
466
Normal
0.0
358
Normal
0.0
125
Tumor
0.0
426
Normal
0.0
557
Tumor
0.0
341
Tumor
0.0
433
Tumor
0.0
422
Normal
0.0
114
Normal
0.0
635
Tumor
0.0
642
Normal
0.0
111
Normal
0.0
187
Tumor
0.0
353
Tumor
0.0
361
Tumor
0.0
627
Tumor
0.0
217
Tumor
0.0
873
Tumor
0.0
186
Normal
0.0
477
Tumor
-0.1
172
Normal
-0.1
185
Tumor
-0.1
137
Tumor
-0.1
923
Tumor
-0.1
493
Tumor
-0.1
497
Tumor
-0.1
851
Tumor
-0.1
661
Tumor
-0.1
413
Tumor
-0.1
383
Tumor
-0.1
861
Tumor
-0.1
517
Tumor
-0.1
537
Tumor
-0.1
113
Tumor
-0.1
785
Tumor
-0.1
423
Tumor
-0.1
663
Tumor
-0.1
135
Tumor
-0.1
636
Normal
-0.1
1021
Tumor
-0.1
724
Normal
-0.1
925
Tumor
-0.1
483
Tumor
-0.1
523
Tumor
-0.1
883
Tumor
-0.2
387
Tumor
-0.2
865
Tumor
-0.2
257
Tumor
-0.2
727
Tumor
-0.2
535
Tumor
-0.2
277
Tumor
-0.2
395
Tumor
-0.2
161
Tumor
-0.2
615
Tumor
-0.2
355
Tumor
-0.2
573
Tumor
-0.2
431
Tumor
-0.2
695
Tumor
-0.2
367
Tumor
-0.2
1027
Tumor
-0.2
953
Tumor
-0.2
815
Tumor
-0.2
271
Tumor
-0.3
571
Tumor
-0.3
267
Tumor
-0.3
425
Tumor
-0.3
487
Tumor
-0.3
647
Tumor
-0.3
112
Tumor
-0.3
465
Tumor
-0.3
393
Tumor
-0.3
171
Tumor
-0.3
391
Tumor
-0.3
741
Tumor
-0.3
665
Tumor
-0.4
957
Tumor
-0.4
435
Tumor
-0.4
983
Tumor
-0.4
445
Tumor
-0.4
411
Tumor
-0.4
443
Tumor
-0.4
685
Tumor
-0.4
357
Tumor
-0.5
127
Tumor
-0.5
123
Tumor
-0.6
351
Tumor
-0.6
1013
Tumor
-0.7
567
Tumor
-0.7
231
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
