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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC13A5 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
77.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
482.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
448.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
445.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
362.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
353.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
350.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
319.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
296.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
285.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
276.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
273.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
252.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
244.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
244.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
237.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
237.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
235.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
225.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
214.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
214.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
213.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
212.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
212.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
212.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
197.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
194.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
194.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
190.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
186.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
185.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
183.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
183.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
181.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
179.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
178.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
178.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
177.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
176.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
174.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
174.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
174.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
170.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
165.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
164.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
161.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
159.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
157.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
156.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
156.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
156.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
154.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
153.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
152.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
151.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
151.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
148.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
147.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
142.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
141.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
141.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
139.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
138.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
138.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
136.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
134.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
131.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
130.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
130.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
128.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
128.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
124.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
122.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
122.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
122.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
122.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
121.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
121.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
119.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
119.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
119.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
117.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
114.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
114.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
114.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
113.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
113.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
113.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
110.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
110.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
110.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
109.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
109.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
107.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
107.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
107.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
107.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
106.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
105.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
104.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
102.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
102.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
102.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
102.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
99.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
99.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
98.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
98.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
98.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
98.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
97.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
96.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
96.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
95.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
92.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
92.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
92.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
91.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
89.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
89.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
89.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
88.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
87.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
86.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
85.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
85.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
85.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
83.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
83.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
82.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
82.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
82.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
81.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
81.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
80.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
79.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
79.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
78.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
77.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
77.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
76.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
76.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
76.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
75.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
75.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
74.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
74.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
74.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
73.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
73.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
71.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
71.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
71.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
70.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
70.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
70.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
69.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
68.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
68.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
68.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
68.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
68.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
67.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
66.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
66.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
66.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
66.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
66.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
66.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
66.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
65.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
64.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
63.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
62.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
62.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
61.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
61.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
61.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
60.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
59.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
59.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
59.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
59.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
57.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
57.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
56.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
56.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
55.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
55.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
54.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
54.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
53.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
53.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
53.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
53.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
52.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
52.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
52.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
52.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
52.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
52.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
52.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
52.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
52.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
51.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
51.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
51.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
50.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
49.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
49.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
48.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
48.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
48.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
48.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
47.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
47.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
46.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
46.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
45.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
45.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
43.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
42.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
42.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
42.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
42.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
42.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
41.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
41.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
40.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
40.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
40.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
39.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
39.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
39.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
38.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
37.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
35.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
35.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
35.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
35.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
34.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
34.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
34.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
34.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
34.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
33.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
33.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
33.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
33.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
33.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
32.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
32.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
31.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
30.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
29.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
29.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
29.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
29.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
28.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
27.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
27.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
26.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
26.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
26.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
25.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
24.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
24.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
23.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
23.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
22.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
20.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
19.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
19.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
17.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
17.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
17.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
16.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
15.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
15.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
14.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
14.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
14.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
14.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
14.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
13.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
13.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
12.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
11.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
11.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
11.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
8.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
8.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
7.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
5.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
4.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
3.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
3.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
2.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
1.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
1.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
1.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
1.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
1.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC13A5 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
78.8
Number of samples
231
Samples
Sample
Description
TPM
DO45199
0 years, female, NA, stage:2, alive, 1350 days
491.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
448.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
336.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
333.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
278.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
277.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
273.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
267.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
261.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
254.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
240.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
225.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
221.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
218.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
215.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
212.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
207.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
200.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
199.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
184.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
178.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
176.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
173.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
173.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
172.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
171.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
166.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
164.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
162.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
161.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
160.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
159.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
158.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
157.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
155.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
155.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
154.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
151.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
150.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
149.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
146.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
144.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
143.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
140.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
140.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
139.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
137.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
130.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
129.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
127.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
122.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
122.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
119.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
119.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
119.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
118.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
116.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
115.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
115.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
113.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
108.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
105.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
102.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
102.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
102.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
101.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
100.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
98.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
98.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
95.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
93.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
92.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
91.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
91.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
90.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
88.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
87.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
87.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
87.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
86.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
86.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
85.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
84.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
83.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
83.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
82.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
79.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
78.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
78.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
78.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
77.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
77.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
77.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
76.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
76.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
75.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
75.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
74.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
73.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
73.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
67.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
66.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
64.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
64.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
63.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
63.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
63.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
61.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
60.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
59.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
59.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
59.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
57.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
57.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
56.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
52.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
52.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
51.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
51.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
50.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
50.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
49.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
49.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
49.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
49.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
48.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
47.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
47.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
46.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
46.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
45.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
45.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
44.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
44.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
42.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
42.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
41.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
41.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
41.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
41.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
41.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
40.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
40.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
40.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
39.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
38.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
38.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
37.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
37.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
36.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
36.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
35.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
35.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
35.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
33.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
32.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
32.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
32.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
31.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
31.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
30.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
29.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
28.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
27.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
27.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
27.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
27.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
26.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
25.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
24.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
20.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
20.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
19.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
19.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
19.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
19.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
19.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
17.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
17.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
16.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
16.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
15.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
15.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
15.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
14.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
13.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
13.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
13.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
10.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
9.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
5.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
5.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
4.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
4.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
4.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
4.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
3.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
3.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
2.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
2.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
1.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
1.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
1.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
1.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
1.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
0.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
937
Tumor
1.9
363
Tumor
1.6
353
Tumor
1.2
145
Tumor
1.2
191
Tumor
1.2
466
Normal
1.2
696
Normal
1.0
368
Normal
1.0
267
Tumor
1.0
648
Normal
1.0
142
Normal
0.9
981
Tumor
0.9
232
Normal
0.9
938
Normal
0.8
558
Normal
0.8
641
Tumor
0.8
868
Normal
0.8
618
Normal
0.8
968
Normal
0.8
428
Normal
0.8
286
Normal
0.8
526
Normal
0.8
518
Normal
0.8
392
Normal
0.8
474
Normal
0.8
414
Normal
0.8
858
Normal
0.7
866
Normal
0.7
952
Normal
0.7
742
Normal
0.7
915
Tumor
0.7
756
Normal
0.7
517
Tumor
0.7
944
Normal
0.7
464
Normal
0.7
468
Normal
0.7
922
Normal
0.7
686
Normal
0.7
728
Normal
0.7
926
Normal
0.7
954
Normal
0.6
172
Normal
0.6
918
Normal
0.6
162
Normal
0.6
1016
Normal
0.6
484
Normal
0.6
557
Tumor
0.6
272
Normal
0.6
778
Normal
0.6
528
Normal
0.6
258
Normal
0.6
396
Normal
0.6
514
Normal
0.6
111
Normal
0.6
462
Normal
0.6
824
Normal
0.6
924
Normal
0.6
228
Normal
0.5
662
Normal
0.5
494
Normal
0.5
864
Normal
0.5
128
Normal
0.5
642
Normal
0.5
1026
Normal
0.5
1028
Normal
0.5
424
Normal
0.5
963
Tumor
0.5
218
Normal
0.5
978
Normal
0.5
114
Normal
0.5
568
Normal
0.5
1025
Tumor
0.5
448
Normal
0.5
212
Normal
0.5
723
Tumor
0.5
666
Normal
0.5
113
Tumor
0.5
436
Normal
0.4
664
Normal
0.4
132
Normal
0.4
616
Normal
0.4
356
Normal
0.4
1042
Normal
0.4
1031
Tumor
0.4
574
Normal
0.4
328
Normal
0.4
222
Normal
0.4
223
Tumor
0.4
786
Normal
0.4
394
Normal
0.4
196
Normal
0.4
488
Normal
0.4
746
Normal
0.4
628
Normal
0.4
878
Normal
0.4
538
Normal
0.4
636
Normal
0.3
1022
Normal
0.3
546
Normal
0.3
534
Normal
0.3
564
Normal
0.3
862
Normal
0.3
124
Normal
0.3
1032
Normal
0.3
912
Normal
0.3
362
Normal
0.3
262
Normal
0.3
148
Normal
0.3
976
Normal
0.3
572
Normal
0.3
426
Normal
0.3
284
Normal
0.3
877
Tumor
0.3
738
Normal
0.3
1046
Normal
0.3
1014
Normal
0.3
982
Normal
0.3
714
Normal
0.3
277
Tumor
0.3
432
Normal
0.3
984
Normal
0.3
224
Normal
0.3
914
Normal
0.3
524
Normal
0.3
186
Normal
0.3
472
Normal
0.3
874
Normal
0.3
358
Normal
0.3
268
Normal
0.3
685
Tumor
0.3
533
Tumor
0.2
314
Normal
0.2
195
Tumor
0.2
422
Normal
0.2
554
Normal
0.2
816
Normal
0.2
536
Normal
0.2
366
Normal
0.2
867
Tumor
0.2
672
Normal
0.2
388
Normal
0.2
136
Normal
0.2
467
Tumor
0.2
492
Normal
0.2
755
Tumor
0.2
278
Normal
0.2
916
Normal
0.2
852
Normal
0.2
138
Normal
0.2
446
Normal
0.2
958
Normal
0.2
487
Tumor
0.2
1041
Tumor
0.2
298
Normal
0.1
498
Normal
0.1
376
Normal
0.1
882
Normal
0.1
452
Normal
0.1
964
Normal
0.1
352
Normal
0.1
721
Tumor
0.1
354
Normal
0.1
327
Tumor
0.1
384
Normal
0.1
665
Tumor
0.1
698
Normal
0.1
861
Tumor
0.1
131
Tumor
0.1
977
Tumor
0.1
715
Tumor
0.1
1044
Normal
0.1
187
Tumor
0.1
635
Tumor
0.1
873
Tumor
0.1
553
Tumor
0.0
785
Tumor
0.0
482
Normal
0.0
823
Tumor
0.0
516
Normal
0.0
185
Tumor
0.0
716
Normal
0.0
722
Normal
0.0
456
Normal
0.0
884
Normal
0.0
344
Normal
0.0
412
Normal
-0.1
957
Tumor
-0.1
713
Tumor
-0.1
463
Tumor
-0.1
956
Normal
-0.1
364
Normal
-0.1
851
Tumor
-0.1
332
Normal
-0.1
537
Tumor
-0.1
461
Tumor
-0.1
214
Normal
-0.1
416
Normal
-0.1
421
Tumor
-0.1
1021
Tumor
-0.1
481
Tumor
-0.1
966
Normal
-0.2
217
Tumor
-0.2
913
Tumor
-0.2
411
Tumor
-0.2
146
Normal
-0.2
188
Normal
-0.2
386
Normal
-0.2
342
Normal
-0.2
491
Tumor
-0.3
727
Tumor
-0.3
112
Tumor
-0.3
126
Normal
-0.3
744
Normal
-0.3
493
Tumor
-0.3
444
Normal
-0.3
435
Tumor
-0.3
1015
Tumor
-0.3
1013
Tumor
-0.3
695
Tumor
-0.3
857
Tumor
-0.4
515
Tumor
-0.4
135
Tumor
-0.4
818
Normal
-0.4
413
Tumor
-0.4
434
Normal
-0.4
423
Tumor
-0.4
312
Normal
-0.4
513
Tumor
-0.4
865
Tumor
-0.4
573
Tumor
-0.5
563
Tumor
-0.5
147
Tumor
-0.5
425
Tumor
-0.6
192
Normal
-0.6
571
Tumor
-0.6
955
Tumor
-0.6
141
Tumor
-0.6
447
Tumor
-0.6
815
Tumor
-0.6
881
Tumor
-0.6
814
Normal
-0.6
965
Tumor
-0.6
473
Tumor
-0.7
357
Tumor
-0.7
451
Tumor
-0.7
171
Tumor
-0.7
361
Tumor
-0.7
967
Tumor
-0.7
923
Tumor
-0.7
523
Tumor
-0.8
343
Tumor
-0.8
415
Tumor
-0.8
497
Tumor
-0.8
1045
Tumor
-0.8
161
Tumor
-0.8
917
Tumor
-0.8
271
Tumor
-0.8
477
Tumor
-0.8
365
Tumor
-0.8
617
Tumor
-0.8
465
Tumor
-0.8
817
Tumor
-0.8
433
Tumor
-0.8
257
Tumor
-0.9
285
Tumor
-0.9
431
Tumor
-0.9
478
Normal
-0.9
951
Tumor
-0.9
455
Tumor
-0.9
427
Tumor
-0.9
883
Tumor
-1.0
741
Tumor
-1.0
943
Tumor
-1.0
471
Tumor
-1.0
745
Tumor
-1.0
647
Tumor
-1.0
137
Tumor
-1.0
355
Tumor
-1.0
525
Tumor
-1.1
925
Tumor
-1.1
227
Tumor
-1.1
127
Tumor
-1.1
391
Tumor
-1.1
813
Tumor
-1.1
351
Tumor
-1.1
393
Tumor
-1.1
231
Tumor
-1.2
615
Tumor
-1.2
387
Tumor
-1.2
283
Tumor
-1.2
697
Tumor
-1.2
297
Tumor
-1.3
443
Tumor
-1.3
567
Tumor
-1.4
341
Tumor
-1.4
545
Tumor
-1.4
483
Tumor
-1.4
724
Normal
-1.5
627
Tumor
-1.5
313
Tumor
-1.5
527
Tumor
-1.5
383
Tumor
-1.5
975
Tumor
-1.5
983
Tumor
-1.5
661
Tumor
-1.5
367
Tumor
-1.6
777
Tumor
-1.6
911
Tumor
-1.6
213
Tumor
-1.6
1027
Tumor
-1.7
221
Tumor
-1.7
737
Tumor
-1.7
261
Tumor
-1.7
671
Tumor
-1.8
395
Tumor
-1.8
311
Tumor
-1.8
211
Tumor
-1.8
331
Tumor
-1.8
385
Tumor
-1.9
445
Tumor
-1.9
663
Tumor
-1.9
743
Tumor
-1.9
863
Tumor
-1.9
921
Tumor
-2.0
375
Tumor
-2.1
953
Tumor
-2.3
1043
Tumor
-2.5
125
Tumor
-2.5
535
Tumor
-2.7
123
Tumor
-3.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.