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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PELP1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
48.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
39.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
38.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
38.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
37.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
37.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
37.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
33.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
32.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
32.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
32.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
31.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
31.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
31.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
30.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
30.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
29.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
29.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
28.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
27.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
27.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
26.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
26.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
26.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
26.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
25.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
25.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
25.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
25.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
24.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
24.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
24.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
24.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
23.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
23.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
22.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
22.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
22.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
22.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
22.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
22.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
22.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
21.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
21.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
21.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
21.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
21.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
21.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
21.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
21.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
21.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
21.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
21.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
21.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
21.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
20.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
20.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
20.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
20.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
20.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
20.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
20.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
20.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
20.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
19.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
19.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
19.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
19.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
19.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
19.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
19.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
19.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
19.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
18.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
18.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
18.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
18.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
18.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
18.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
18.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
18.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
18.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
18.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
18.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
17.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
17.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
17.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
17.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
17.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
17.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
17.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
17.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
17.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
17.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
17.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
16.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
16.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
16.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
16.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
16.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
16.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
16.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
16.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
16.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
16.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
16.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
16.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
16.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
16.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
16.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
16.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
16.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
16.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
15.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
15.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
15.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
15.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
15.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
15.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
15.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
15.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
15.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
15.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
15.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
15.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
15.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
15.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
15.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
15.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
15.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
15.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
14.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
14.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
14.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
14.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
14.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
14.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
14.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
14.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
14.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
14.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
14.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
14.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
14.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
14.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
14.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
14.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
14.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
14.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
14.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
14.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
14.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
14.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
14.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
13.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
13.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
13.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
13.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
13.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
13.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
13.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
13.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
13.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
13.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
13.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
12.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
12.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
12.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
12.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
12.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
12.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
12.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
12.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
12.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
12.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
12.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
12.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
12.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
11.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
11.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
11.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
11.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
11.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
11.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
11.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
11.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
11.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
11.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
11.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
11.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
11.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
11.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
11.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
10.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
10.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
10.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
10.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
10.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
10.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
10.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
10.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
10.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
10.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
10.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
10.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
10.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
9.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
9.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
9.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
9.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
9.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
9.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PELP1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.2
Number of samples
231
Samples
Sample
Description
TPM
DO50815
0 years, male, NA, stage:3, alive, 150 days
37.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
34.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
30.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
30.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
29.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
29.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
27.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
26.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
24.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
24.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
23.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
23.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
21.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
21.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
21.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
20.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
20.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
20.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
19.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
19.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
19.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
19.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
19.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
18.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
18.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
18.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
18.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
18.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
17.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
17.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
17.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
16.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
16.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
16.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
16.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
16.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
16.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
16.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
16.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
16.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
15.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
15.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
15.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
15.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
15.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
15.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
15.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
15.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
14.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
14.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
14.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
14.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
14.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
14.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
14.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
14.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
13.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
13.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
13.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
13.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
13.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
13.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
13.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
13.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
12.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
12.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
12.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
12.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
12.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
11.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
11.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
11.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
11.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
11.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
11.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
11.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
10.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
10.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
10.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
10.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
9.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
8.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
7.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
6.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
6.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
6.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
6.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
5.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
4.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
4.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
4.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
3.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
815
Tumor
1.2
285
Tumor
0.9
131
Tumor
0.9
425
Tumor
0.9
227
Tumor
0.9
965
Tumor
0.9
123
Tumor
0.8
921
Tumor
0.8
367
Tumor
0.8
865
Tumor
0.7
473
Tumor
0.7
983
Tumor
0.7
385
Tumor
0.7
715
Tumor
0.7
817
Tumor
0.7
937
Tumor
0.7
695
Tumor
0.7
641
Tumor
0.6
413
Tumor
0.6
427
Tumor
0.6
391
Tumor
0.6
661
Tumor
0.6
363
Tumor
0.5
743
Tumor
0.5
967
Tumor
0.5
525
Tumor
0.5
877
Tumor
0.5
135
Tumor
0.5
567
Tumor
0.5
351
Tumor
0.4
851
Tumor
0.4
553
Tumor
0.4
113
Tumor
0.4
537
Tumor
0.4
395
Tumor
0.4
951
Tumor
0.4
343
Tumor
0.4
127
Tumor
0.4
217
Tumor
0.4
957
Tumor
0.4
1015
Tumor
0.3
383
Tumor
0.3
447
Tumor
0.3
545
Tumor
0.3
573
Tumor
0.3
671
Tumor
0.3
375
Tumor
0.3
487
Tumor
0.3
271
Tumor
0.3
467
Tumor
0.3
221
Tumor
0.3
331
Tumor
0.3
535
Tumor
0.3
881
Tumor
0.3
277
Tumor
0.3
192
Normal
0.3
721
Tumor
0.3
368
Normal
0.3
463
Tumor
0.3
161
Tumor
0.3
283
Tumor
0.3
191
Tumor
0.3
557
Tumor
0.2
125
Tumor
0.2
1031
Tumor
0.2
517
Tumor
0.2
923
Tumor
0.2
365
Tumor
0.2
497
Tumor
0.2
435
Tumor
0.2
124
Normal
0.2
313
Tumor
0.2
741
Tumor
0.2
493
Tumor
0.2
724
Normal
0.2
917
Tumor
0.2
635
Tumor
0.2
913
Tumor
0.2
446
Normal
0.2
314
Normal
0.2
523
Tumor
0.2
444
Normal
0.2
615
Tumor
0.2
975
Tumor
0.2
332
Normal
0.2
223
Tumor
0.1
341
Tumor
0.1
258
Normal
0.1
213
Tumor
0.1
267
Tumor
0.1
777
Tumor
0.1
433
Tumor
0.1
257
Tumor
0.1
344
Normal
0.1
963
Tumor
0.1
513
Tumor
0.1
953
Tumor
0.1
1013
Tumor
0.1
451
Tumor
0.1
297
Tumor
0.1
268
Normal
0.1
114
Normal
0.1
327
Tumor
0.1
432
Normal
0.1
443
Tumor
0.1
434
Normal
0.1
1025
Tumor
0.1
195
Tumor
0.1
727
Tumor
0.1
426
Normal
0.1
636
Normal
0.1
737
Tumor
0.1
222
Normal
0.1
298
Normal
0.1
278
Normal
0.1
126
Normal
0.1
538
Normal
0.1
196
Normal
0.1
465
Tumor
0.1
232
Normal
0.1
393
Tumor
0.1
915
Tumor
0.1
141
Tumor
0.0
1043
Tumor
0.0
755
Tumor
0.0
211
Tumor
0.0
214
Normal
0.0
554
Normal
0.0
1045
Tumor
0.0
411
Tumor
0.0
483
Tumor
0.0
384
Normal
0.0
976
Normal
0.0
423
Tumor
0.0
665
Tumor
0.0
218
Normal
0.0
713
Tumor
0.0
574
Normal
0.0
461
Tumor
0.0
376
Normal
0.0
477
Tumor
0.0
744
Normal
0.0
112
Tumor
0.0
984
Normal
0.0
943
Tumor
0.0
534
Normal
0.0
813
Tumor
0.0
478
Normal
0.0
814
Normal
0.0
286
Normal
0.0
366
Normal
0.0
188
Normal
0.0
261
Tumor
0.0
224
Normal
0.0
421
Tumor
0.0
111
Normal
0.0
546
Normal
0.0
228
Normal
0.0
663
Tumor
0.0
185
Tumor
0.0
262
Normal
0.0
362
Normal
0.0
272
Normal
0.0
982
Normal
0.0
464
Normal
0.0
171
Tumor
0.0
672
Normal
0.0
468
Normal
0.0
533
Tumor
0.0
617
Tumor
0.0
312
Normal
0.0
785
Tumor
0.0
647
Tumor
-0.1
873
Tumor
-0.1
128
Normal
-0.1
664
Normal
-0.1
528
Normal
-0.1
187
Tumor
-0.1
358
Normal
-0.1
452
Normal
-0.1
627
Tumor
-0.1
445
Tumor
-0.1
642
Normal
-0.1
978
Normal
-0.1
212
Normal
-0.1
356
Normal
-0.1
355
Tumor
-0.1
524
Normal
-0.1
516
Normal
-0.1
354
Normal
-0.1
387
Tumor
-0.1
428
Normal
-0.1
352
Normal
-0.1
618
Normal
-0.1
925
Tumor
-0.1
146
Normal
-0.1
137
Tumor
-0.1
491
Tumor
-0.1
147
Tumor
-0.1
1016
Normal
-0.1
342
Normal
-0.1
414
Normal
-0.1
823
Tumor
-0.1
977
Tumor
-0.1
515
Tumor
-0.1
431
Tumor
-0.1
466
Normal
-0.1
716
Normal
-0.1
916
Normal
-0.1
536
Normal
-0.1
964
Normal
-0.1
424
Normal
-0.1
357
Tumor
-0.1
353
Tumor
-0.1
481
Tumor
-0.1
138
Normal
-0.1
361
Tumor
-0.1
328
Normal
-0.1
416
Normal
-0.1
455
Tumor
-0.1
186
Normal
-0.1
456
Normal
-0.1
883
Tumor
-0.1
563
Tumor
-0.1
145
Tumor
-0.1
857
Tumor
-0.1
966
Normal
-0.1
816
Normal
-0.1
738
Normal
-0.1
412
Normal
-0.1
955
Tumor
-0.1
742
Normal
-0.1
1046
Normal
-0.1
666
Normal
-0.1
172
Normal
-0.2
396
Normal
-0.2
564
Normal
-0.2
981
Tumor
-0.2
648
Normal
-0.2
628
Normal
-0.2
415
Tumor
-0.2
922
Normal
-0.2
148
Normal
-0.2
422
Normal
-0.2
861
Tumor
-0.2
568
Normal
-0.2
968
Normal
-0.2
436
Normal
-0.2
284
Normal
-0.2
728
Normal
-0.2
471
Tumor
-0.2
616
Normal
-0.2
697
Tumor
-0.2
514
Normal
-0.2
956
Normal
-0.2
231
Tumor
-0.2
686
Normal
-0.2
874
Normal
-0.2
558
Normal
-0.2
388
Normal
-0.2
786
Normal
-0.2
364
Normal
-0.2
723
Tumor
-0.2
918
Normal
-0.2
958
Normal
-0.2
863
Tumor
-0.2
132
Normal
-0.2
492
Normal
-0.2
386
Normal
-0.2
162
Normal
-0.2
1044
Normal
-0.2
394
Normal
-0.2
714
Normal
-0.2
926
Normal
-0.2
311
Tumor
-0.2
448
Normal
-0.2
142
Normal
-0.2
526
Normal
-0.2
952
Normal
-0.2
858
Normal
-0.2
1041
Tumor
-0.2
571
Tumor
-0.2
662
Normal
-0.2
518
Normal
-0.3
1014
Normal
-0.3
924
Normal
-0.3
722
Normal
-0.3
938
Normal
-0.3
696
Normal
-0.3
572
Normal
-0.3
864
Normal
-0.3
756
Normal
-0.3
698
Normal
-0.3
1021
Tumor
-0.3
472
Normal
-0.3
1026
Normal
-0.3
498
Normal
-0.3
868
Normal
-0.3
852
Normal
-0.3
954
Normal
-0.3
474
Normal
-0.3
1042
Normal
-0.3
527
Tumor
-0.3
824
Normal
-0.3
488
Normal
-0.3
911
Tumor
-0.3
866
Normal
-0.3
136
Normal
-0.3
392
Normal
-0.3
462
Normal
-0.3
494
Normal
-0.3
884
Normal
-0.3
878
Normal
-0.4
746
Normal
-0.4
912
Normal
-0.4
482
Normal
-0.4
818
Normal
-0.4
1022
Normal
-0.4
1027
Tumor
-0.4
1028
Normal
-0.4
914
Normal
-0.4
944
Normal
-0.4
862
Normal
-0.4
882
Normal
-0.4
778
Normal
-0.4
484
Normal
-0.5
867
Tumor
-0.5
745
Tumor
-0.5
685
Tumor
-0.5
1032
Normal
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
