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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
C18orf21 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
43.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
40.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
34.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
31.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
31.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
31.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
31.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
31.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
30.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
29.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
29.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
29.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
28.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
27.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
27.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
27.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
26.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
26.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
26.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
25.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
25.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
25.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
24.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
24.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
23.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
23.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
23.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
23.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
23.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
23.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
23.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
23.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
22.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
22.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
22.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
22.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
22.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
21.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
21.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
21.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
21.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
21.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
21.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
21.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
21.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
20.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
20.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
20.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
20.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
20.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
20.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
20.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
20.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
19.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
19.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
19.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
19.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
19.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
19.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
19.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
19.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
19.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
18.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
18.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
18.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
18.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
18.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
18.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
18.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
18.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
18.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
18.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
18.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
17.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
17.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
17.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
17.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
17.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
17.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
17.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
17.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
17.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
17.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
16.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
16.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
16.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
16.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
16.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
16.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
16.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
16.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
16.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
16.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
16.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
16.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
16.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
16.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
16.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
15.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
15.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
15.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
15.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
15.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
15.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
15.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
15.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
15.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
15.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
15.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
15.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
15.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
15.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
15.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
15.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
15.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
15.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
15.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
15.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
14.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
14.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
14.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
14.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
14.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
14.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
14.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
14.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
14.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
14.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
14.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
14.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
14.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
14.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
14.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
14.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
14.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
14.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
13.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
13.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
13.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
13.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
13.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
13.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
13.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
13.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
13.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
13.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
13.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
13.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
13.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
13.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
13.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
13.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
13.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
13.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
13.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
13.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
13.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
13.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
12.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
12.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
12.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
12.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
12.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
12.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
12.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
12.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
12.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
12.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
12.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
12.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
12.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
12.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
12.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
12.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
12.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
12.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
12.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
12.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
12.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
12.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
12.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
12.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
12.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
12.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
11.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
11.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
11.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
11.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
11.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
11.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
11.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
11.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
11.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
11.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
11.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
11.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
11.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
11.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
11.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
11.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
10.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
10.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
10.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
10.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
10.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
10.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
10.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
10.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
10.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
10.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
10.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
10.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
9.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
9.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
9.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
9.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
9.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
9.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
7.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
C18orf21 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.4
Number of samples
231
Samples
Sample
Description
TPM
DO45211
0 years, male, NA, stage:3, alive, 240 days
45.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
39.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
33.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
29.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
28.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
26.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
23.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
23.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
22.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
21.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
21.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
20.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
20.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
20.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
19.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
19.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
19.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
18.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
18.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
18.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
18.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
17.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
17.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
17.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
17.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
17.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
17.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
17.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
17.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
17.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
17.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
16.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
16.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
16.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
16.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
16.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
16.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
16.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
16.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
16.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
15.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
15.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
15.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
15.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
15.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
15.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
15.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
15.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
15.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
15.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
15.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
15.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
15.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
14.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
14.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
14.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
14.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
14.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
14.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
14.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
14.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
14.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
14.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
13.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
13.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
13.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
13.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
13.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
13.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
13.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
13.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
13.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
13.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
13.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
13.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
12.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
12.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
12.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
12.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
12.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
12.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
12.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
12.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
12.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
12.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
12.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
11.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
11.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
11.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
11.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
10.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
10.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
10.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
9.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
9.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
8.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
8.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
8.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
7.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
7.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
6.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
6.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
5.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
2.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
186
Normal
1.6
365
Tumor
1.6
188
Normal
1.6
376
Normal
1.6
148
Normal
1.5
384
Normal
1.5
172
Normal
1.4
332
Normal
1.4
147
Tumor
1.4
366
Normal
1.4
278
Normal
1.3
331
Tumor
1.3
362
Normal
1.3
865
Tumor
1.3
171
Tumor
1.3
162
Normal
1.2
298
Normal
1.2
277
Tumor
1.1
361
Tumor
1.1
314
Normal
1.1
185
Tumor
1.0
367
Tumor
1.0
375
Tumor
1.0
161
Tumor
1.0
983
Tumor
1.0
123
Tumor
1.0
817
Tumor
1.0
467
Tumor
1.0
1013
Tumor
0.9
257
Tumor
0.9
368
Normal
0.9
953
Tumor
0.9
313
Tumor
0.8
187
Tumor
0.8
113
Tumor
0.8
517
Tumor
0.8
957
Tumor
0.8
1021
Tumor
0.8
312
Normal
0.7
1015
Tumor
0.7
468
Normal
0.7
297
Tumor
0.7
574
Normal
0.6
452
Normal
0.6
427
Tumor
0.6
564
Normal
0.6
456
Normal
0.6
1031
Tumor
0.6
1025
Tumor
0.6
447
Tumor
0.5
466
Normal
0.5
285
Tumor
0.5
112
Tumor
0.5
463
Tumor
0.5
124
Normal
0.5
131
Tumor
0.5
857
Tumor
0.5
451
Tumor
0.5
537
Tumor
0.5
851
Tumor
0.5
861
Tumor
0.5
563
Tumor
0.5
125
Tumor
0.4
383
Tumor
0.4
211
Tumor
0.4
535
Tumor
0.4
111
Normal
0.4
114
Normal
0.4
413
Tumor
0.4
491
Tumor
0.4
877
Tumor
0.4
984
Normal
0.4
1041
Tumor
0.3
978
Normal
0.3
956
Normal
0.3
128
Normal
0.3
852
Normal
0.3
464
Normal
0.3
455
Tumor
0.3
977
Tumor
0.3
311
Tumor
0.3
671
Tumor
0.3
1027
Tumor
0.3
954
Normal
0.3
141
Tumor
0.3
744
Normal
0.3
525
Tumor
0.3
493
Tumor
0.3
514
Normal
0.3
864
Normal
0.3
513
Tumor
0.3
911
Tumor
0.2
874
Normal
0.2
283
Tumor
0.2
137
Tumor
0.2
815
Tumor
0.2
432
Normal
0.2
497
Tumor
0.2
866
Normal
0.2
414
Normal
0.2
742
Normal
0.2
423
Tumor
0.2
425
Tumor
0.2
728
Normal
0.2
873
Tumor
0.2
568
Normal
0.2
724
Normal
0.2
465
Tumor
0.2
284
Normal
0.2
443
Tumor
0.2
937
Tumor
0.2
863
Tumor
0.2
868
Normal
0.1
426
Normal
0.1
567
Tumor
0.1
867
Tumor
0.1
723
Tumor
0.1
955
Tumor
0.1
727
Tumor
0.1
1022
Normal
0.1
421
Tumor
0.1
858
Normal
0.1
1042
Normal
0.1
526
Normal
0.1
572
Normal
0.1
777
Tumor
0.1
975
Tumor
0.1
738
Normal
0.1
755
Tumor
0.1
545
Tumor
0.1
661
Tumor
0.1
663
Tumor
0.1
1046
Normal
0.1
647
Tumor
0.1
145
Tumor
0.1
818
Normal
0.1
422
Normal
0.1
557
Tumor
0.1
146
Normal
0.1
132
Normal
0.1
433
Tumor
0.1
1028
Normal
0.0
524
Normal
0.0
126
Normal
0.0
943
Tumor
0.0
135
Tumor
0.0
1016
Normal
0.0
224
Normal
0.0
267
Tumor
0.0
785
Tumor
0.0
981
Tumor
0.0
881
Tumor
0.0
662
Normal
0.0
424
Normal
0.0
1032
Normal
0.0
492
Normal
0.0
558
Normal
0.0
528
Normal
0.0
533
Tumor
0.0
534
Normal
0.0
142
Normal
0.0
444
Normal
0.0
743
Tumor
0.0
516
Normal
0.0
925
Tumor
0.0
138
Normal
0.0
498
Normal
0.0
536
Normal
0.0
127
Tumor
0.0
136
Normal
0.0
665
Tumor
0.0
487
Tumor
-0.1
428
Normal
-0.1
698
Normal
-0.1
483
Tumor
-0.1
745
Tumor
-0.1
518
Normal
-0.1
878
Normal
-0.1
786
Normal
-0.1
515
Tumor
-0.1
258
Normal
-0.1
918
Normal
-0.1
434
Normal
-0.1
756
Normal
-0.1
913
Tumor
-0.1
1026
Normal
-0.1
746
Normal
-0.1
494
Normal
-0.1
944
Normal
-0.1
741
Tumor
-0.2
926
Normal
-0.2
664
Normal
-0.2
922
Normal
-0.2
223
Tumor
-0.2
965
Tumor
-0.2
488
Normal
-0.2
737
Tumor
-0.2
778
Normal
-0.2
914
Normal
-0.2
232
Normal
-0.2
648
Normal
-0.2
538
Normal
-0.2
697
Tumor
-0.2
286
Normal
-0.2
553
Tumor
-0.2
261
Tumor
-0.2
1044
Normal
-0.2
231
Tumor
-0.2
268
Normal
-0.2
1014
Normal
-0.3
228
Normal
-0.3
227
Tumor
-0.3
967
Tumor
-0.3
431
Tumor
-0.3
921
Tumor
-0.3
554
Normal
-0.3
448
Normal
-0.3
212
Normal
-0.3
436
Normal
-0.3
916
Normal
-0.3
546
Normal
-0.3
1043
Tumor
-0.3
862
Normal
-0.3
912
Normal
-0.3
446
Normal
-0.3
917
Tumor
-0.4
923
Tumor
-0.4
1045
Tumor
-0.4
951
Tumor
-0.4
666
Normal
-0.4
672
Normal
-0.4
262
Normal
-0.4
915
Tumor
-0.4
435
Tumor
-0.4
882
Normal
-0.5
571
Tumor
-0.5
963
Tumor
-0.5
484
Normal
-0.5
982
Normal
-0.5
952
Normal
-0.5
814
Normal
-0.5
883
Tumor
-0.5
924
Normal
-0.5
527
Tumor
-0.5
816
Normal
-0.5
523
Tumor
-0.6
938
Normal
-0.6
573
Tumor
-0.6
271
Tumor
-0.7
445
Tumor
-0.7
813
Tumor
-0.8
958
Normal
-1.0
964
Normal
-1.1
272
Normal
-1.2
884
Normal
-1.2
976
Normal
-1.3
968
Normal
-1.3
824
Normal
-1.3
823
Tumor
-1.4
966
Normal
-2.0
471
Tumor
N/A
351
Tumor
N/A
472
Normal
N/A
352
Normal
N/A
473
Tumor
N/A
353
Tumor
N/A
474
Normal
N/A
354
Normal
N/A
355
Tumor
N/A
356
Normal
N/A
477
Tumor
N/A
357
Tumor
N/A
478
Normal
N/A
358
Normal
N/A
481
Tumor
N/A
482
Normal
N/A
363
Tumor
N/A
364
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
387
Tumor
N/A
388
Normal
N/A
391
Tumor
N/A
392
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
713
Tumor
N/A
714
Normal
N/A
715
Tumor
N/A
716
Normal
N/A
721
Tumor
N/A
722
Normal
N/A
615
Tumor
N/A
616
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
635
Tumor
N/A
636
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
415
Tumor
N/A
416
Normal
N/A
685
Tumor
N/A
686
Normal
N/A
327
Tumor
N/A
328
Normal
N/A
695
Tumor
N/A
696
Normal
N/A
213
Tumor
N/A
214
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
461
Tumor
N/A
341
Tumor
N/A
462
Normal
N/A
221
Tumor
N/A
342
Normal
N/A
222
Normal
N/A
343
Tumor
N/A
344
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
