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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PTRH2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
39.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
134.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
117.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
106.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
103.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
102.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
98.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
87.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
83.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
82.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
81.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
78.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
77.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
77.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
76.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
76.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
75.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
75.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
74.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
74.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
72.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
72.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
72.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
71.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
71.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
71.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
70.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
70.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
69.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
69.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
69.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
68.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
68.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
67.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
67.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
67.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
66.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
66.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
65.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
64.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
63.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
63.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
63.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
62.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
62.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
61.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
60.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
60.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
60.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
59.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
58.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
58.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
58.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
58.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
57.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
57.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
57.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
57.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
57.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
56.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
56.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
55.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
55.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
55.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
55.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
54.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
54.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
53.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
53.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
52.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
52.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
52.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
52.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
51.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
50.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
50.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
50.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
50.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
49.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
49.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
49.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
49.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
48.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
48.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
48.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
48.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
47.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
47.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
47.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
47.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
47.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
46.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
46.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
46.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
46.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
46.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
45.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
45.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
45.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
45.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
44.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
44.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
44.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
44.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
44.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
44.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
43.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
43.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
43.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
43.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
43.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
43.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
43.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
43.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
43.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
43.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
42.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
42.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
42.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
42.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
42.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
42.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
42.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
42.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
41.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
41.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
41.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
41.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
40.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
40.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
40.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
40.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
40.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
40.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
40.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
40.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
40.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
40.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
40.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
39.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
39.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
39.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
39.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
39.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
39.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
39.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
38.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
38.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
38.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
38.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
38.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
38.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
38.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
38.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
38.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
38.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
38.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
38.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
38.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
37.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
37.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
37.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
37.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
37.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
37.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
37.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
37.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
37.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
37.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
37.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
36.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
36.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
36.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
36.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
36.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
36.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
36.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
36.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
36.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
36.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
35.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
35.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
35.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
35.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
35.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
35.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
34.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
34.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
34.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
34.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
34.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
34.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
34.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
33.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
33.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
33.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
33.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
33.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
33.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
33.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
33.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
33.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
33.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
33.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
33.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
32.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
32.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
32.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
32.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
32.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
32.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
32.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
31.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
31.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
31.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
31.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
31.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
31.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
31.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
31.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
31.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
30.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
30.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
30.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
30.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
30.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
30.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
30.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
30.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
30.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
30.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
30.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
30.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
30.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
30.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
30.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
30.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
29.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
29.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
29.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
29.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
29.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
29.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
29.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
29.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
29.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
29.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
29.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
29.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
29.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
29.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
28.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
28.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
28.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
28.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
28.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
28.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
28.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
28.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
28.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
28.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
28.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
28.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
28.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
27.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
27.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
27.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
27.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
27.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
27.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
27.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
26.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
26.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
26.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
26.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
26.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
26.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
26.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
26.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
26.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
26.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
26.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
26.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
26.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
26.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
25.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
25.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
25.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
25.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
25.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
25.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
25.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
25.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
25.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
24.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
24.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
24.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
24.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
24.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
24.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
24.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
24.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
24.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
24.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
24.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
24.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
24.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
24.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
24.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
24.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
23.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
23.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
23.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
23.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
23.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
23.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
23.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
23.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
23.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
22.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
22.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
22.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
22.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
22.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
22.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
22.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
21.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
21.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
21.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
21.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
21.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
21.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
21.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
20.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
20.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
20.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
20.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
20.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
20.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
20.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
20.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
19.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
19.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
19.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
19.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
19.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
19.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
18.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
18.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
18.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
18.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
18.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
18.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
18.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
18.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
17.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
17.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
16.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
16.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
15.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
15.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PTRH2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
31.1
Number of samples
231
Samples
Sample
Description
TPM
DO50791
0 years, female, NA, stage:1, dead, 480 days
111.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
102.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
93.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
92.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
88.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
84.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
70.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
70.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
69.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
69.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
68.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
67.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
67.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
67.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
65.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
63.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
62.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
62.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
58.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
57.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
57.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
55.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
52.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
52.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
50.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
50.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
46.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
46.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
46.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
45.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
45.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
44.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
44.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
43.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
42.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
42.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
42.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
41.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
41.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
40.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
40.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
39.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
39.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
39.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
38.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
38.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
37.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
37.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
37.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
37.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
37.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
37.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
37.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
36.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
36.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
36.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
36.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
36.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
36.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
36.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
36.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
35.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
35.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
34.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
34.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
34.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
34.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
34.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
34.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
34.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
33.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
33.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
32.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
32.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
32.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
32.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
31.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
31.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
31.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
31.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
31.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
31.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
31.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
30.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
30.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
30.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
30.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
30.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
30.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
30.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
30.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
30.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
29.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
29.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
29.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
29.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
29.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
29.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
29.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
28.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
28.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
28.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
28.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
28.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
27.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
27.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
27.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
27.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
27.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
27.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
27.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
27.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
26.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
26.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
26.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
26.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
26.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
26.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
26.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
26.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
26.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
25.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
25.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
25.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
25.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
25.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
25.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
25.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
25.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
25.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
25.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
25.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
24.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
24.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
24.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
24.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
24.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
24.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
24.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
24.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
24.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
23.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
23.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
23.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
23.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
23.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
23.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
23.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
23.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
23.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
22.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
22.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
22.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
22.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
22.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
22.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
21.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
21.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
21.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
21.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
21.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
21.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
20.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
20.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
20.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
20.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
20.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
20.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
20.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
20.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
20.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
20.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
19.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
19.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
19.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
19.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
19.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
19.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
19.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
19.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
19.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
19.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
19.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
18.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
18.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
18.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
18.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
18.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
18.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
18.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
17.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
17.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
17.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
17.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
17.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
17.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
17.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
17.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
17.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
17.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
17.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
17.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
17.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
17.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
17.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
17.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
16.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
16.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
16.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
16.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
16.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
16.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
16.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
15.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
15.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
15.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
15.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
15.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
13.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
13.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
533
Tumor
2.4
685
Tumor
1.2
525
Tumor
1.2
435
Tumor
1.1
981
Tumor
1.1
363
Tumor
0.9
815
Tumor
0.8
745
Tumor
0.8
353
Tumor
0.8
913
Tumor
0.7
227
Tumor
0.7
557
Tumor
0.6
861
Tumor
0.6
357
Tumor
0.6
431
Tumor
0.6
477
Tumor
0.6
137
Tumor
0.6
983
Tumor
0.5
1013
Tumor
0.5
513
Tumor
0.5
957
Tumor
0.5
573
Tumor
0.5
393
Tumor
0.5
741
Tumor
0.5
473
Tumor
0.5
465
Tumor
0.4
697
Tumor
0.4
285
Tumor
0.4
867
Tumor
0.4
1027
Tumor
0.4
965
Tumor
0.3
567
Tumor
0.3
443
Tumor
0.3
1021
Tumor
0.3
331
Tumor
0.3
433
Tumor
0.3
455
Tumor
0.3
527
Tumor
0.2
421
Tumor
0.2
635
Tumor
0.2
427
Tumor
0.2
423
Tumor
0.2
1015
Tumor
0.2
187
Tumor
0.2
857
Tumor
0.2
387
Tumor
0.2
493
Tumor
0.2
411
Tumor
0.2
367
Tumor
0.2
724
Normal
0.2
147
Tumor
0.1
713
Tumor
0.1
671
Tumor
0.1
1014
Normal
0.1
526
Normal
0.1
563
Tumor
0.1
1016
Normal
0.1
494
Normal
0.1
351
Tumor
0.1
128
Normal
0.1
195
Tumor
0.1
925
Tumor
0.1
483
Tumor
0.1
627
Tumor
0.0
864
Normal
0.0
212
Normal
0.0
746
Normal
0.0
823
Tumor
0.0
228
Normal
0.0
523
Tumor
0.0
448
Normal
0.0
376
Normal
0.0
984
Normal
0.0
572
Normal
0.0
1041
Tumor
0.0
445
Tumor
0.0
466
Normal
0.0
257
Tumor
0.0
955
Tumor
0.0
356
Normal
0.0
474
Normal
0.0
738
Normal
0.0
546
Normal
0.0
267
Tumor
0.0
113
Tumor
0.0
851
Tumor
0.0
535
Tumor
0.0
518
Normal
0.0
721
Tumor
0.0
1028
Normal
0.0
414
Normal
0.0
327
Tumor
0.0
191
Tumor
0.0
922
Normal
0.0
564
Normal
0.0
452
Normal
0.0
1032
Normal
0.0
952
Normal
0.0
514
Normal
0.0
617
Tumor
0.0
944
Normal
0.0
471
Tumor
0.0
817
Tumor
0.0
816
Normal
0.0
534
Normal
0.0
982
Normal
0.0
568
Normal
0.0
375
Tumor
0.0
571
Tumor
0.0
1026
Normal
0.0
148
Normal
0.0
127
Tumor
-0.1
918
Normal
-0.1
742
Normal
-0.1
422
Normal
-0.1
424
Normal
-0.1
123
Tumor
-0.1
395
Tumor
-0.1
131
Tumor
-0.1
261
Tumor
-0.1
142
Normal
-0.1
728
Normal
-0.1
862
Normal
-0.1
938
Normal
-0.1
383
Tumor
-0.1
1046
Normal
-0.1
221
Tumor
-0.1
412
Normal
-0.1
516
Normal
-0.1
524
Normal
-0.1
223
Tumor
-0.1
696
Normal
-0.1
953
Tumor
-0.1
1044
Normal
-0.1
615
Tumor
-0.1
436
Normal
-0.1
528
Normal
-0.1
497
Tumor
-0.1
558
Normal
-0.1
1045
Tumor
-0.1
392
Normal
-0.1
311
Tumor
-0.1
786
Normal
-0.1
271
Tumor
-0.1
976
Normal
-0.1
937
Tumor
-0.1
132
Normal
-0.1
484
Normal
-0.1
663
Tumor
-0.1
328
Normal
-0.1
852
Normal
-0.1
866
Normal
-0.1
172
Normal
-0.1
111
Normal
-0.1
868
Normal
-0.1
364
Normal
-0.1
186
Normal
-0.1
554
Normal
-0.1
361
Tumor
-0.1
468
Normal
-0.1
743
Tumor
-0.1
878
Normal
-0.1
977
Tumor
-0.1
714
Normal
-0.1
722
Normal
-0.1
824
Normal
-0.1
388
Normal
-0.1
447
Tumor
-0.1
467
Tumor
-0.2
284
Normal
-0.2
665
Tumor
-0.2
715
Tumor
-0.2
426
Normal
-0.2
278
Normal
-0.2
915
Tumor
-0.2
196
Normal
-0.2
413
Tumor
-0.2
362
Normal
-0.2
1022
Normal
-0.2
778
Normal
-0.2
968
Normal
-0.2
492
Normal
-0.2
461
Tumor
-0.2
355
Tumor
-0.2
924
Normal
-0.2
286
Normal
-0.2
978
Normal
-0.2
114
Normal
-0.2
698
Normal
-0.2
881
Tumor
-0.2
545
Tumor
-0.2
462
Normal
-0.2
914
Normal
-0.2
214
Normal
-0.2
716
Normal
-0.2
482
Normal
-0.2
451
Tumor
-0.2
1025
Tumor
-0.2
354
Normal
-0.2
756
Normal
-0.2
515
Tumor
-0.2
686
Normal
-0.2
342
Normal
-0.2
136
Normal
-0.2
1042
Normal
-0.2
964
Normal
-0.2
135
Tumor
-0.2
481
Tumor
-0.2
967
Tumor
-0.2
277
Tumor
-0.2
312
Normal
-0.2
865
Tumor
-0.2
112
Tumor
-0.2
488
Normal
-0.2
956
Normal
-0.2
911
Tumor
-0.2
755
Tumor
-0.2
472
Normal
-0.2
1031
Tumor
-0.2
171
Tumor
-0.2
641
Tumor
-0.2
124
Normal
-0.2
923
Tumor
-0.2
297
Tumor
-0.2
232
Normal
-0.3
487
Tumor
-0.3
211
Tumor
-0.3
314
Normal
-0.3
145
Tumor
-0.3
415
Tumor
-0.3
553
Tumor
-0.3
456
Normal
-0.3
648
Normal
-0.3
574
Normal
-0.3
883
Tumor
-0.3
618
Normal
-0.3
647
Tumor
-0.3
416
Normal
-0.3
262
Normal
-0.3
873
Tumor
-0.3
391
Tumor
-0.3
636
Normal
-0.3
958
Normal
-0.3
341
Tumor
-0.3
882
Normal
-0.3
874
Normal
-0.3
538
Normal
-0.3
723
Tumor
-0.3
432
Normal
-0.3
138
Normal
-0.3
464
Normal
-0.3
188
Normal
-0.3
394
Normal
-0.3
272
Normal
-0.3
217
Tumor
-0.3
162
Normal
-0.3
877
Tumor
-0.3
858
Normal
-0.3
966
Normal
-0.3
926
Normal
-0.3
727
Tumor
-0.3
298
Normal
-0.3
954
Normal
-0.3
358
Normal
-0.3
491
Tumor
-0.3
951
Tumor
-0.3
975
Tumor
-0.3
258
Normal
-0.3
785
Tumor
-0.3
126
Normal
-0.4
963
Tumor
-0.4
628
Normal
-0.4
536
Normal
-0.4
185
Tumor
-0.4
1043
Tumor
-0.4
222
Normal
-0.4
537
Tumor
-0.4
332
Normal
-0.4
642
Normal
-0.4
517
Tumor
-0.4
662
Normal
-0.4
396
Normal
-0.4
916
Normal
-0.4
385
Tumor
-0.4
352
Normal
-0.4
213
Tumor
-0.4
218
Normal
-0.4
224
Normal
-0.4
231
Tumor
-0.4
777
Tumor
-0.4
146
Normal
-0.4
884
Normal
-0.4
917
Tumor
-0.4
428
Normal
-0.4
744
Normal
-0.4
366
Normal
-0.4
344
Normal
-0.4
125
Tumor
-0.4
912
Normal
-0.4
463
Tumor
-0.5
478
Normal
-0.5
818
Normal
-0.5
672
Normal
-0.5
616
Normal
-0.5
737
Tumor
-0.5
664
Normal
-0.5
446
Normal
-0.5
365
Tumor
-0.5
434
Normal
-0.5
368
Normal
-0.5
813
Tumor
-0.5
943
Tumor
-0.5
498
Normal
-0.5
386
Normal
-0.6
695
Tumor
-0.6
268
Normal
-0.6
863
Tumor
-0.6
814
Normal
-0.6
444
Normal
-0.6
661
Tumor
-0.6
161
Tumor
-0.7
384
Normal
-0.7
141
Tumor
-0.7
343
Tumor
-0.7
666
Normal
-0.7
192
Normal
-0.7
425
Tumor
-0.8
283
Tumor
-0.9
921
Tumor
-0.9
313
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
