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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SCRN2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
36.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
196.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
142.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
120.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
120.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
113.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
106.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
103.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
102.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
99.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
93.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
92.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
92.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
89.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
87.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
86.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
82.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
82.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
81.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
78.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
77.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
77.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
76.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
76.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
75.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
74.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
74.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
74.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
71.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
69.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
68.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
67.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
67.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
66.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
65.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
63.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
63.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
61.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
61.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
61.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
61.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
61.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
58.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
58.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
58.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
58.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
58.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
57.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
56.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
56.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
56.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
56.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
56.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
55.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
55.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
53.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
53.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
52.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
52.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
52.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
52.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
52.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
52.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
51.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
51.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
51.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
51.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
50.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
50.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
50.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
50.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
50.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
50.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
50.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
48.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
48.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
48.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
47.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
47.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
47.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
47.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
46.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
45.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
45.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
45.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
45.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
45.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
44.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
44.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
43.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
43.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
43.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
43.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
43.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
42.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
42.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
41.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
41.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
41.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
41.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
41.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
41.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
40.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
40.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
40.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
40.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
40.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
40.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
40.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
40.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
39.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
39.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
39.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
39.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
39.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
39.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
39.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
39.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
38.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
38.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
38.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
38.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
38.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
37.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
37.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
37.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
37.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
37.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
36.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
36.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
36.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
36.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
36.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
36.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
35.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
35.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
35.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
35.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
34.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
34.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
34.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
34.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
34.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
34.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
34.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
34.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
34.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
33.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
33.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
33.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
33.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
33.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
33.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
32.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
32.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
32.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
32.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
32.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
32.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
32.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
32.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
31.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
31.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
31.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
31.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
31.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
31.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
31.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
30.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
30.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
30.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
30.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
30.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
30.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
30.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
30.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
30.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
30.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
30.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
30.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
30.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
29.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
29.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
29.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
29.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
29.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
29.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
29.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
29.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
29.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
29.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
29.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
29.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
29.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
29.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
29.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
29.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
29.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
29.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
28.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
28.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
28.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
28.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
28.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
28.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
28.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
28.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
28.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
28.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
28.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
28.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
27.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
27.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
27.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
27.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
27.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
27.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
27.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
27.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
27.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
27.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
27.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
27.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
26.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
26.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
26.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
26.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
26.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
26.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
26.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
26.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
26.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
26.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
26.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
26.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
25.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
25.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
25.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
25.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
25.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
25.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
25.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
25.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
25.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
25.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
25.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
25.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
25.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
24.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
24.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
24.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
24.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
24.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
24.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
24.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
24.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
23.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
23.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
23.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
23.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
23.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
23.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
23.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
23.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
22.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
22.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
22.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
22.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
22.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
22.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
22.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
22.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
22.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
22.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
22.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
22.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
21.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
21.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
21.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
21.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
21.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
21.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
21.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
21.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
21.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
21.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
21.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
20.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
20.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
20.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
20.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
20.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
20.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
19.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
19.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
19.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
19.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
19.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
19.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
19.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
19.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
18.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
18.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
18.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
18.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
18.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
18.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
18.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
18.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
18.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
18.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
18.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
17.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
17.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
17.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
17.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
17.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
17.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
17.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
17.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
16.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
16.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
16.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
16.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
15.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
15.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
15.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
15.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
15.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
15.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
15.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
14.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
14.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
14.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
14.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
14.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
14.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
14.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
13.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
13.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
13.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
13.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
13.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
13.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
12.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
12.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
12.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
11.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
11.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
11.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
8.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SCRN2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
28.5
Number of samples
231
Samples
Sample
Description
TPM
DO50839
0 years, female, NA, stage:3, alive, 330 days
156.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
112.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
96.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
91.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
82.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
70.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
66.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
65.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
63.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
62.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
62.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
62.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
59.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
58.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
57.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
56.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
54.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
54.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
53.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
52.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
51.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
51.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
51.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
49.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
48.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
47.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
44.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
43.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
43.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
43.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
43.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
43.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
43.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
42.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
42.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
42.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
42.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
41.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
41.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
40.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
40.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
39.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
39.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
38.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
37.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
37.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
37.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
37.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
37.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
36.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
36.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
36.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
36.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
35.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
35.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
35.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
34.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
34.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
34.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
34.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
34.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
33.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
33.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
32.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
32.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
32.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
32.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
32.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
32.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
31.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
30.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
30.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
30.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
30.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
30.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
30.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
30.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
29.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
29.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
29.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
29.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
29.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
29.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
29.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
29.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
28.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
28.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
28.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
28.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
28.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
28.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
28.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
27.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
27.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
27.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
27.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
26.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
26.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
26.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
26.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
26.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
26.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
26.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
26.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
25.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
25.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
25.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
25.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
25.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
25.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
25.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
25.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
24.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
24.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
24.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
24.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
23.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
23.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
23.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
23.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
23.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
23.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
23.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
23.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
23.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
23.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
22.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
22.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
22.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
22.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
22.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
22.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
21.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
21.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
21.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
21.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
21.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
21.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
21.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
21.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
21.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
20.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
20.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
20.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
20.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
20.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
20.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
20.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
20.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
20.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
20.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
20.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
20.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
19.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
19.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
19.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
19.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
19.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
19.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
19.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
19.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
19.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
18.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
18.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
18.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
18.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
18.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
18.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
18.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
18.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
18.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
17.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
17.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
17.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
17.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
16.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
16.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
16.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
16.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
16.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
15.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
15.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
15.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
15.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
15.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
15.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
15.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
15.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
14.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
14.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
14.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
14.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
14.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
13.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
13.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
13.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
13.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
12.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
12.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
12.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
10.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
9.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
9.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
9.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
533
Tumor
1.4
617
Tumor
1.2
261
Tumor
0.9
516
Normal
0.8
278
Normal
0.7
147
Tumor
0.7
746
Normal
0.7
312
Normal
0.7
422
Normal
0.6
128
Normal
0.6
314
Normal
0.6
196
Normal
0.6
272
Normal
0.6
358
Normal
0.6
648
Normal
0.6
464
Normal
0.6
513
Tumor
0.5
452
Normal
0.5
132
Normal
0.5
1043
Tumor
0.5
414
Normal
0.5
366
Normal
0.5
864
Normal
0.5
456
Normal
0.5
332
Normal
0.5
1026
Normal
0.5
136
Normal
0.5
146
Normal
0.5
742
Normal
0.5
426
Normal
0.5
494
Normal
0.5
258
Normal
0.5
424
Normal
0.5
214
Normal
0.5
262
Normal
0.5
172
Normal
0.5
435
Tumor
0.5
376
Normal
0.5
298
Normal
0.4
1027
Tumor
0.4
952
Normal
0.4
738
Normal
0.4
618
Normal
0.4
546
Normal
0.4
436
Normal
0.4
342
Normal
0.4
745
Tumor
0.4
354
Normal
0.4
466
Normal
0.4
188
Normal
0.4
416
Normal
0.4
222
Normal
0.4
914
Normal
0.4
186
Normal
0.4
388
Normal
0.4
1022
Normal
0.4
148
Normal
0.4
257
Tumor
0.4
1016
Normal
0.4
642
Normal
0.4
862
Normal
0.4
114
Normal
0.4
866
Normal
0.4
878
Normal
0.3
356
Normal
0.3
484
Normal
0.3
386
Normal
0.3
756
Normal
0.3
518
Normal
0.3
628
Normal
0.3
918
Normal
0.3
468
Normal
0.3
868
Normal
0.3
685
Tumor
0.3
162
Normal
0.3
472
Normal
0.3
482
Normal
0.3
432
Normal
0.3
716
Normal
0.3
364
Normal
0.3
1046
Normal
0.3
127
Tumor
0.3
212
Normal
0.3
728
Normal
0.3
428
Normal
0.3
938
Normal
0.3
474
Normal
0.3
616
Normal
0.3
755
Tumor
0.3
966
Normal
0.3
412
Normal
0.3
568
Normal
0.3
636
Normal
0.3
958
Normal
0.3
268
Normal
0.3
352
Normal
0.3
922
Normal
0.3
874
Normal
0.2
171
Tumor
0.2
517
Tumor
0.2
462
Normal
0.2
126
Normal
0.2
915
Tumor
0.2
572
Normal
0.2
231
Tumor
0.2
924
Normal
0.2
481
Tumor
0.2
515
Tumor
0.2
695
Tumor
0.2
514
Normal
0.2
723
Tumor
0.2
434
Normal
0.2
353
Tumor
0.2
786
Normal
0.2
232
Normal
0.2
1042
Normal
0.2
981
Tumor
0.2
448
Normal
0.2
341
Tumor
0.2
564
Normal
0.2
446
Normal
0.2
124
Normal
0.2
744
Normal
0.2
574
Normal
0.2
228
Normal
0.2
982
Normal
0.2
861
Tumor
0.2
858
Normal
0.2
976
Normal
0.2
528
Normal
0.2
662
Normal
0.1
882
Normal
0.1
741
Tumor
0.1
415
Tumor
0.1
911
Tumor
0.1
698
Normal
0.1
344
Normal
0.1
362
Normal
0.1
286
Normal
0.1
696
Normal
0.1
394
Normal
0.1
722
Normal
0.1
714
Normal
0.1
824
Normal
0.1
488
Normal
0.1
423
Tumor
0.1
664
Normal
0.1
912
Normal
0.1
271
Tumor
0.1
142
Normal
0.1
852
Normal
0.1
777
Tumor
0.1
138
Normal
0.1
558
Normal
0.1
944
Normal
0.1
526
Normal
0.1
328
Normal
0.1
284
Normal
0.1
1032
Normal
0.0
387
Tumor
0.0
686
Normal
0.0
554
Normal
0.0
727
Tumor
0.0
964
Normal
0.0
916
Normal
0.0
1044
Normal
0.0
534
Normal
0.0
968
Normal
0.0
778
Normal
0.0
218
Normal
0.0
187
Tumor
0.0
884
Normal
0.0
926
Normal
0.0
666
Normal
0.0
361
Tumor
0.0
384
Normal
0.0
867
Tumor
0.0
816
Normal
0.0
141
Tumor
0.0
984
Normal
0.0
444
Normal
0.0
563
Tumor
0.0
111
Normal
0.0
615
Tumor
0.0
963
Tumor
-0.1
978
Normal
-0.1
351
Tumor
-0.1
421
Tumor
-0.1
267
Tumor
-0.1
857
Tumor
-0.1
1028
Normal
-0.1
433
Tumor
-0.1
956
Normal
-0.1
192
Normal
-0.1
538
Normal
-0.1
492
Normal
-0.1
863
Tumor
-0.1
672
Normal
-0.1
785
Tumor
-0.1
571
Tumor
-0.1
715
Tumor
-0.1
392
Normal
-0.1
224
Normal
-0.1
365
Tumor
-0.2
1014
Normal
-0.2
641
Tumor
-0.2
451
Tumor
-0.2
277
Tumor
-0.2
954
Normal
-0.2
185
Tumor
-0.2
635
Tumor
-0.2
957
Tumor
-0.2
498
Normal
-0.2
567
Tumor
-0.2
553
Tumor
-0.2
357
Tumor
-0.2
465
Tumor
-0.2
473
Tumor
-0.2
1041
Tumor
-0.2
411
Tumor
-0.3
471
Tumor
-0.3
627
Tumor
-0.3
363
Tumor
-0.3
925
Tumor
-0.3
455
Tumor
-0.3
135
Tumor
-0.3
161
Tumor
-0.3
865
Tumor
-0.3
368
Normal
-0.3
877
Tumor
-0.3
355
Tumor
-0.3
557
Tumor
-0.3
445
Tumor
-0.3
818
Normal
-0.3
461
Tumor
-0.3
524
Normal
-0.3
873
Tumor
-0.3
1045
Tumor
-0.4
327
Tumor
-0.4
195
Tumor
-0.4
536
Normal
-0.4
721
Tumor
-0.4
443
Tumor
-0.4
937
Tumor
-0.4
191
Tumor
-0.4
647
Tumor
-0.4
213
Tumor
-0.4
113
Tumor
-0.4
737
Tumor
-0.4
467
Tumor
-0.4
221
Tumor
-0.4
145
Tumor
-0.4
223
Tumor
-0.4
493
Tumor
-0.4
523
Tumor
-0.4
955
Tumor
-0.5
953
Tumor
-0.5
535
Tumor
-0.5
311
Tumor
-0.5
913
Tumor
-0.5
977
Tumor
-0.5
217
Tumor
-0.5
917
Tumor
-0.5
921
Tumor
-0.5
297
Tumor
-0.5
112
Tumor
-0.5
431
Tumor
-0.6
396
Normal
-0.6
813
Tumor
-0.6
814
Normal
-0.6
447
Tumor
-0.6
1015
Tumor
-0.6
983
Tumor
-0.6
487
Tumor
-0.6
823
Tumor
-0.6
413
Tumor
-0.6
393
Tumor
-0.7
427
Tumor
-0.7
881
Tumor
-0.7
883
Tumor
-0.7
131
Tumor
-0.7
491
Tumor
-0.7
137
Tumor
-0.7
665
Tumor
-0.7
483
Tumor
-0.7
478
Normal
-0.7
965
Tumor
-0.7
383
Tumor
-0.7
313
Tumor
-0.7
923
Tumor
-0.7
967
Tumor
-0.8
125
Tumor
-0.8
1021
Tumor
-0.8
663
Tumor
-0.8
123
Tumor
-0.8
975
Tumor
-0.8
385
Tumor
-0.8
343
Tumor
-0.8
331
Tumor
-0.8
951
Tumor
-0.8
573
Tumor
-0.8
525
Tumor
-0.8
463
Tumor
-0.8
285
Tumor
-0.8
943
Tumor
-0.9
697
Tumor
-0.9
227
Tumor
-0.9
1013
Tumor
-0.9
713
Tumor
-0.9
815
Tumor
-0.9
1025
Tumor
-0.9
367
Tumor
-1.0
425
Tumor
-1.0
211
Tumor
-1.0
527
Tumor
-1.0
724
Normal
-1.0
477
Tumor
-1.0
391
Tumor
-1.0
375
Tumor
-1.1
537
Tumor
-1.1
283
Tumor
-1.2
497
Tumor
-1.2
743
Tumor
-1.2
1031
Tumor
-1.3
851
Tumor
-1.3
545
Tumor
-1.3
671
Tumor
-1.3
817
Tumor
-1.3
395
Tumor
-1.4
661
Tumor
-1.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
